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Metabolomicsthe intracellular flow of hexadecane in J31 cells

To investigate the metabolism and bioconversion of hexadecane in J31 cells, 13C-labeled hexadecane was added to the OM medium, and the intracellular flow of hexadecane in J31 cells was analyzed using the stable isotope technique via non-target metabolomics. study abstract/description

2025-11-04 | MTBLS13250 | MetaboLights
ProteomicsDARTS-MS chemoproteomic profiling of ginkgolide J-associated protease-susceptibility candidate proteins in rat PASMC lysates
This dataset contains DIA-MS raw files and processed DIA-NN results from a DARTS-MS chemoproteomic experiment designed to identify ginkgolide J-associated protease-susceptibility candidate proteins in primary rat pulmonary artery smooth muscle cell (PASMC) lysates. The experiment included three grou...
ORGANISM(S): Rattus Norvegicus 
PXD078800 |
ProteomicsRBM39 organizes an m⁶A-dependent silencing complex to degrade Tat mRNA and maintain HIV-1 latency
Given the pivotal role of Tat in HIV-1 latency, we performed RNA pull-down assays in latently HIV-1-infected J-Lat 10.6 cells using biotinylated RNA probes (including a control RNA probe and a Tat-specific RNA probe) . Cell lysates were incubated with streptavidin agarose resin pre-bound to Tat RNA ...
ORGANISM(S): Homo sapiens (Human) 
2025-10-31 | PXD064834 | Pride
Lc/ms Tat Rip J-lat 10.6 
GenomicsHomo sapiens isolate:J-Lat 10.6
RNA-seq analysis of TFD-treated J-Lat 10.6 cells
PRJNA1304135 | ENA
TranscriptomicsIntegration of tomato reproductive developmental landmarks and expression profiles, and the effect of SUN on fruit shape
Universally accepted landmark stages are necessary to highlight key events in tomato reproductive development. In this study, we provide a description of floral and fruit development in a red-fruited closely related wild relative of tomato, Solanum pimpinellifolium accession LA1589. We use establis...
ORGANISM(S): Solanum pimpinellifolium 
2010-05-18 | E-GEOD-15453 | biostudies-arrayexpress
MetabolomicsCorpora amylacea profiling reveals disease stage and brain region-specific alterations in glycogen metabolism in Alzheimer’s disease patient brains (MS (MTBLS))

Increasing evidence indicates that shifts in brain polysaccharide metabolism can influence the progression of multiple neurodegenerative diseases. Here we perform MALDI-MSI analysis of glycogen at different chain lengths in patients at different stages of Alzheimer's Disease. We look at frontal c...

2026-06-12 | MTBLS14754 | MetaboLights
TranscriptomicsSolar simulated ultraviolet radiation induces histone 3 methylation changes in the gene promoters of matrix metalloproteinases 1 and 3 in primary human dermal fibroblasts [I]
Skin damage from solar ultraviolet radiation (UVR) accumulates in the dermal extracellular matrix (ECM) and contributes to photoaging. Following UVR exposure, matrix metalloproteinases (MMPs) are secreted by dermal fibroblasts to repair and remodel the ECM. Molecular signaling pathways delineating t...
ORGANISM(S): Homo sapiens 
2014-08-27 | E-GEOD-60794 | biostudies-arrayexpress
GenomicsJBP1-seq: a fast and efficient method for genome-wide profiling of 5hmC
We developed a novel approach, J-binding protein 1 sequencing (JBP1-seq), that combines the benefits of an improved recombinant JBP1 protein, Nextera-based library construction, and nextgeneration sequencing (NGS) for genome-wide profiling of 5-hydroxymethylcytosine (5hmC). Compared with the orig...
ORGANISM(S): Homo sapiens 
2014-11-26 | E-GEOD-61193 | biostudies-arrayexpress
UnknownHybrid-J shape needle in ultrasound-guided looped thread carpal tunnel release: a cadaveric study on safety and efficacy.
Not available
S-EPMC12306031 | biostudies-literature
ProteomicsMapping the tRNA Modification Landscape of Bartonella henselae Houston I and Bartonella quintana Toulouse
Transfer RNA (tRNA) modifications play a crucial role in maintaining translational fidelity and efficiency, and they may function as regulatory elements in stress response and virulence. Despite their pivotal roles, a comprehensive mapping of tRNA modifications and their associated synthesis genes i...
ORGANISM(S): Bartonella henselae (strain ATCC 49882 / Houston 1) (Rochalimaea henselae) Bartonella quintana str. Toulouse 
2024-01-23 | PXD048805 | Pride
Trna modification Intracellular pathogens Mass spectrometry Next-generation sequencing. 
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