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ModelsRisso2009 - Genome-scale metabolic network of Rhodoferax ferrireducens (iCR744)
Risso2009 - Genome-scale metabolic network of Rhodoferax ferrireducens (iCR744) This model is described in the article: Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens. Risso C, Sun J, ...
2015-07-30 | MODEL1507180024 | BioModels
UnknownImmune imprinting, breadth of variant recognition, and germinal center response in human SARS-CoV-2 infection and vaccination.
Not available
S-EPMC8786601 | biostudies-literature
TranscriptomicsCircadian Enhancers Coordinate Multiple Phases of Rhythmic Gene Transcription In Vivo
Mammalian transcriptomes display complex circadian rhythms with multiple phases of gene expression that cannot be accounted for by current models of the molecular clock.  We have determined the underlying mechanisms by measuring nascent RNA transcription around the clock in mouse liver. Unbiased ex...
ORGANISM(S): Mus musculus 
2015-01-06 | E-GEOD-59460 | biostudies-arrayexpress
ProteomicsLoss of hepatic miR-33 improves metabolic homeostasis and liver function without altering body weight or atherosclerosis
miR-33 is an intronic microRNA within the gene encoding the SREBP2 transcription factor. Like its host gene, miR-33 has been shown to be an important regulator of lipid metabolism. Inhibition of miR-33 has been shown to promote cholesterol efflux in macrophages by targeting the cholesterol transport...
ORGANISM(S): Mus musculus (Mouse) 
2021-02-11 | PXD023471 | Pride
Mouse plasma 
ProteomicsDyn2 IP mass spectrometry dataset
Dyn2 IPs performed at Drexel and USF proteomics facility for "An Essential Adaptor for Apicoplast Fission and Inheritance in Malaria Parasites" paper. Associated with the additional dataset PXD062126.
ORGANISM(S): Plasmodium Falciparum (ncbitaxon:5833) 
MSV000099148 | MassIVE
MetabolomicsProtein-metabolite interactomics of carbohydrate metabolism reveal regulation of lactate dehydrogenase

Metabolic networks are interconnected and influence diverse cellular processes. The protein-metabolite interactions that mediate these networks are frequently low affinity and challenging to systematically discover. We developed mass spectrometry integrated with equilibrium dialysis for the disco...

2023-08-07 | MTBLS7237 | MetaboLights
GenomicsMELA-AU_RNA_20170516 - samples
BAM outputs from STAR (https://github.com/alexdobin/STAR) analysis of RNASeq sequencing on HiSeq platform of 56 tumour samples from 46 melanoma cases. Gene model = Ensembl version 70
EGAD00001003353 | EGA
Genomics20181113_EGA_MELA_Naevus - samples
Aligned, merged and deduplicated BAM files from HiSeq whole genome sequencing of 28 samples: matched tumour-normal pairs from 14 melanocytic nevi cases
EGAD00001004474 | EGA
Genomics20191008_EGA_MELA_Acral - samples
Illumina platform sequencing of whole genome libraries prepared from paired tumour/normal samples from 87 cases of melanoma Acral subtype. 63 cases also have RNASeq sequencing from the tumour sample.
EGAD00001005500 | EGA
Genomics20190219_EGA_MelanomaOnTreatment - samples
Illumina platform sequencing data for matched tumour-normal DNA samples from 77 melanoma patients participating in a study investigating response to immunotherapy. Selected cases also have RNA sequencing of the tumour.
EGAD00001004869 | EGA
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