Swabs - OmicsDI

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Unknown (6792)
Genomics (1608)
Transcriptomics (139)
Metabolomics (79)
Proteomics (55)
Methylation profiling (10)
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Other (5)

Organisms

Homo sapiens (90)
Rattus norvegicus (27)
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gut metagenome (1)
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Organisms

Homo sapiens (120)
Staphylococcus cohnii (27)
human metagenome (23)
human nasopharyngeal metagenome (21)
human skin metagenome (14)
human oral metagenome (13)
Severe acute respiratory syndrome coronavirus 2 (13)
human vaginal metagenome (11)
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skin metagenome (8)
gut metagenome (8)
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viral metagenome (5)
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human eye metagenome (5)
metagenome (5)
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upper respiratory tract metagenome (4)
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human viral metagenome (3)
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Candidozyma auris (3)
human lung metagenome (3)
oral metagenome (3)
Rattus norvegicus (3)

Repository

ENA (1584)
biostudies-arrayexpress (110)
geo (50)
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pride (37)
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Tissue

Blood plasma (4)
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Disease

COVID-19 (10)
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Liver Neoplasms (2)
Severe acute respiratory syndrome (2)
B. dendrobatidis infection (1)
Normal (1)
HPV infection (1)
Carcinogenesis (1)
Colorectal Cancer (1)
Bacterial vaginosis (1)
Endometriosis (1)
Limb muscle (1)
Long COVID (1)
Mastitis (1)
Viral hepatitis (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (37)
Mass spectrometry (25)
Shotgun proteomics (20)
Bottom-up proteomics (7)
Data-dependent acquisition (6)
SWATH MS (5)
Mass spectrometry assay (4)
SRM/MRM (3)
NMR spectroscopy (2)
Illumina MiSeq, Illumina HiSeq 2500 (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)

Instrument Platform

Q Exactive (24)
MaXis (14)
NextSeq 500 (4)
Q Exactive Plus (4)
Illumina NovaSeq 6000 (3)
Illumina MiSeq (2)
Illumina HiSeq 2500 (2)
6520B Q-TOF LC/MS (2)
6530A Q-TOF LC/MS (2)
6530A Triple Quadrupole LC/MS (2)
Agilent Tapestation 4200 (1)
Basic laboratory equipment (1)
RNA purity was determined by using NanoDrop spectrophotometer ND-2000 (Thermo Fischer Scientific) through the evaluation of the absorbance ratio A260/A280 (1)
ELITeInGenius SP RNA cartridge (ELITechGroup) via ELITeInGenius fully automated system (ELITechGroup) (1)
Spectronic Helios Alpha UV-Vis spectrophotometer (1)
None (1)
GridION (1)
Agilent 6890-5973 (GC/MS) (1)
Agilent 7200 GC-QTOF (1)
MicrOTOF-Q II (1)
Orbitrap (Q-Exactive) (1)
Q-Exactive (1)
TSQ 8000evo(Triple Quadrupole GC-MS) (1)
TSQ QqQ (1)
TSQ Quantum Access (1)
Thermo Scientific TRACE 1310 GC-MS (1)
TripleTOF 6600 (1)
1200 series LC/MSD SL (1)
Autoflex (1)
LTQ Orbitrap XL (1)

Publication Date

2005 (44)
2025 (26)
2021 (26)
2016 (24)
2022 (21)
2020 (19)
2024 (15)
2023 (15)
2026 (14)
2010 (10)
2011 (9)
2019 (8)
2015 (8)
2013 (8)
2017 (7)
2018 (7)
2014 (6)
2006 (5)
2009 (3)
2008 (3)
2012 (2)
2007 (2)

UNIPROT ID/AC

1433S_HUMAN (2)
A0A087WXI2_HUMAN (2)
A0A096LPE2_HUMAN (2)
A1AG1_HUMAN (2)
A1AG2_HUMAN (2)
A1AT_HUMAN (2)
A1BG_HUMAN (2)
A2AP_HUMAN (2)
A2GL_HUMAN (2)
A2MG_HUMAN (2)
AACT_HUMAN (2)
ACTB_HUMAN (2)
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ACTS_HUMAN (2)
ADIPO_HUMAN (2)
AFAM_HUMAN (2)
AGRG6_HUMAN (2)
ALBU_HUMAN (2)
ALS_HUMAN (2)
AMBP_HUMAN (2)
AMPN_HUMAN (2)
ANGT_HUMAN (2)
ANT3_HUMAN (2)
APMAP_HUMAN (2)
APOA1_HUMAN (2)
APOA2_HUMAN (2)
APOA4_HUMAN (2)
APOA_HUMAN (2)
APOB_HUMAN (2)
APOC1_HUMAN (2)

CHEBI ID

CHEBI:28300 (13)
CHEBI:16737 (13)
CHEBI:28044 (12)
CHEBI:15891 (12)
CHEBI:16919 (12)
CHEBI:17368 (12)
CHEBI:25017 (11)
CHEBI:17750 (11)
CHEBI:25094 (11)
CHEBI:16750 (11)
CHEBI:30915 (11)
CHEBI:16335 (11)
CHEBI:22660 (10)
CHEBI:18186 (10)
CHEBI:16811 (10)
CHEBI:27266 (10)
CHEBI:18211 (10)
CHEBI:29016 (10)
CHEBI:18237 (10)
CHEBI:17568 (10)
CHEBI:15741 (10)
CHEBI:22653 (10)
CHEBI:27897 (10)
CHEBI:15354 (10)
CHEBI:17596 (10)
CHEBI:18344 (10)
CHEBI:30769 (10)
CHEBI:26271 (9)
CHEBI:15676 (9)
CHEBI:16704 (9)

Metabolite Name

Citrulline (7)
Taurine (7)
Guanosine (6)
Hypoxanthine (6)
Leucine (5)
Uracil (5)
Choline (5)
Cholic acid (5)
Pantothenic acid (5)
Asparagine (5)
Adenosine (5)
Phenylalanine (5)
N-Acetyl-L-phenylalanine (5)
Xanthine (5)
Uridine (5)
Creatinine (5)
Glutamate (4)
Aspartate (4)
Glutamine (4)
Thymine (4)
Ornithine (4)
Indole-3-lactic acid (4)
Niacinamide (4)
Citric acid (4)
Arginine (4)
Tyrosine (4)
Serine (4)
Guanine (4)
Kynurenine (4)
Glutamine (4)

First Public Date

2025 (257)
2026 (229)
2024 (223)
2021 (158)
2023 (155)
2022 (133)
2020 (129)
2019 (89)
2018 (51)
2017 (39)
2014 (36)
2016 (33)
2015 (29)
2013 (22)
2011 (1)

Classification

bacteria (48)
viruses (25)
fungi (4)

Study status

Completed (3)
Active, not recruiting (2)
Recruiting (2)
Withdrawn (1)

Study type

Transcription profiling by array (75)
Comparative genomic hybridization by array (8)
Methylation profiling by array (6)
RNA-seq of coding RNA (5)
Interventional (5)
Genotyping by array (4)
RNA-seq of coding RNA from single cells (2)
RNA-seq of total RNA (2)
RNA-seq of non coding RNA (2)
Observational (2)
Human - Two-color microarray (1)
Translation profiling (1)
Other (1)
DNA-seq (1)
Genotyping by high throughput sequencing (1)
Observational patient registry (1)

Release Date

2021 (1068)
2022 (1038)
2023 (802)
2024 (687)
2020 (651)
2025 (646)
2019 (401)
2018 (301)
2017 (254)
2016 (193)
2015 (182)
2014 (154)
2013 (98)
2026 (90)
2012 (62)
2010 (58)
2011 (55)
2005 (55)
2009 (22)
2008 (18)
2006 (15)
2007 (14)
2004 (12)
2003 (10)
2002 (7)
2001 (4)
2000 (3)
1999 (1)
1998 (1)

Lab affiliation

Proteomics Lab, 304, BSBE Department, Indian Institute Technology Bombay, Powai, Mumbai, India-400076 (2)
1 College of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, United Arab Emirates 2 School of Dentistry, Cardiff University, Cardiff, United Kingdom (1)
Analytical Biochemistry and Proteomics Unit, Institut Pasteur de Montevideo & Instituto de Investigaciones Biológicas Clemente Estable. (1)
Analytical Biochemistry and Proteomics Unit, Institut Pasteur de Montevideo and Instituto de Investigaciones Biológicas Clemente Estable, Montevideo, Uruguay (1)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (1)
Centre for Genomic Regulation, Universitat Pompeu Fabra (1)
Department of Biochemistry, Indian Institute of Science, Bangalore 560012 ph no. 08022932823 (1)
Department of Biomedical Sciences, University of Sassari, Italy (1)
Department of Biophysics, All India Institute of Medical Sciences, New Delhi, India (1)
Department of Laboratory Medicine and Pathology & Center for Individualized Medicine Mayo Clinic Rochester MN 55905, USA (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905, USA (1)
Department of Laboratory Medicine and Pathology, University of Minnesota Medical School, Minneapolis, MN 55455 USA (1)
Department of Pathology and Conservative Dentistry. Faculty of Dentistry. Centre for Biomedical Research and Innovation (CIIB). Periodontal Research Laboratory. University of the Andes, Santiago, Chile (1)
Department of Surgery and Anaesthesia, University of Otago (Wellington) (1)
Department of proteomics and signal transduction, max planck institute of biochemistry, Germany (1)
Dpt of Medical Microbiology, University of Manitoba, Winnipeg, Canada National HIV and Retrovirology Labs, JC Wilt infectious Disease Centre, Public Health Agency of Canada, Winnipeg, Canada Department of Medicine Solna, Unit of Infectious diseases, Center for Molecular Medicine, Karolinska Institutet, Stocholm, Sweden (1)
General Manager MOLEQLAR Analytics GmbH (1)
Indian Institute of Technology, Bombay (1)
Instituto de Química de Recursos Naturales, Universidad de Talca, Talca, Chile (1)
Laboratory of Functional Microbiology and Livestock Health, School of Animal Science and Technology, Henan University of Science and Technology (1)
National Institute of Standards and Technology, Charleston, South Carolina, USA (1)
Netherlands Forensic Institute (1)
Professor Fellow, American Institute for Medical and Biological Engineering Fellow, American Association for the Advancement of Science Rutgers University Department of Cell Biology and Neuroscience (1)
Professor, Department of Pathology, School of Medicine Director, Center for Global Health and Diseases, School of Medicine, Case Western Reserve University 10900 Euclid Avenue, Cleveland, Ohio, 44106 (1)
Professor, Department of Pathology, School of Medicine Director, Center for Global Health and Diseases, School of Medicine, Case Western Reserve University 10900 Euclid Avenue, Cleveland, Ohio, 44106 (1)
Proteomics Center | Erasmus University Medical Center | Rotterdam, the Netherlands (1)
Proteomics and Metabolomics Research Program, Basic Research Department, Children’s Cancer Hospital, Cairo, Egypt. (1)
Proteomics and Spectroscopy, ZBS6, Robert Koch Institute, Germany (1)
Queensland University of Technology, Australia (1)
Senior Research Fellow, Life Sciences Discipline, Burnet Institute, Australia (1)

Location

United States (3)
Australia (1)
United Kingdom (1)
China (1)
Sweden (1)

Keyword

Feces (1)
Tadalafil (1)
Anticancer Activities (1)
Altering Gut Commensal Bacteria (1)
Immunomdulatory Effect (1)
Checkpoint Inhibition (1)
Vancomycin (1)
Tumor Microenvironment (1)
100 Trillion Microbial Cells (1)
Liver Tumors (1)
Intestinal Microbiota (1)
Immune Regulation (1)
Microbiome (1)
Cancer Screening (1)
Pembrolizumab (1)
Nivolumab (1)

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DIA-based proteome profiling of nasopharyngeal swabs from COVID-19 patients

We sought to characterize the host response through proteome profiling of nasopharyngeal swab specimens. A mass spectrometer combining trapped ion mobility spectrometry and high-resolution QTOF mass spectrometer with a parallel accumulation-serial fragmentation (PASEF) was deployed for unbiased prot...

ORGANISM(S): Homo sapiens (Human)

2021-09-10 | PXD025277 | Pride

Quantitative proteomic dataset from oro- and naso-pharyngeal swabs used for COVID-19 diagnosis: detection of viral proteins and host’s biological processes altered by the infection

We recovered proteins from SARS-CoV-2 positive and negative oro/naso-pharyngeal swabs, obtained from diagnostic center localized at Institut Pasteur de Montevideo, and performed comparative quantitative proteomic analysis.

ORGANISM(S): Homo sapiens (Human) SARS bat coronavirus

2020-07-28 | PXD020394 | Pride

Covid-19 Proteomics Sars-cov-2

Nasopharyngeal swabs

Metaserotyping nasopharyngeal swabs raw sequence reads

PRJNA1270937 | ENA

the middle meatus swabs

the middle meatus swabs Raw sequence reads

PRJNA697755 | ENA

Metaserotyping nasopharyngeal swabs raw sequence reads

Metaserotyping nasopharyngeal swabs

PRJEB90077 | ENA

Direct on-swab metabolic profiling of vaginal microbiome:host interactions during pregnancy and preterm birth

The pregnancy vaginal microbiome contributes to risk of preterm birth, the primary cause of death in children under 5 years of age. Here we describe direct on-swab metabolic profiling by Desorption Electrospray Ionization Mass Spectrometry (DESI-MS) for sample preparation-free characterisation of...

2021-09-23 | MTBLS717 | MetaboLights

Bovine nasal swabs and faeces

Bovine nasal swabs and faeces Raw sequence reads

PRJNA1359347 | ENA

Swabs from the International Space Station

Swabs from the International Space Station Raw sequence reads

PRJNA376404 | ENA

Vaginal swabs

Vaginal swabs Metagenome

PRJNA741092 | ENA

Cattle nasal and rectal swabs metagenome

Cattle nasal and rectal swabs samples metagenome raw sequence reads

PRJNA1120236 | ENA

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