Sy M S MS - OmicsDI

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Unknown (559)
Proteomics (189)
Metabolomics (37)
Transcriptomics (22)
Genomics (2)

Organisms

Homo sapiens (133)
Mus musculus (32)
Arabidopsis thaliana (5)
Drosophila melanogaster (5)
Escherichia coli (5)
Saccharomyces cerevisiae (4)
Danio rerio (2)
Toxoplasma gondii (2)
Oryza sativa (2)
Rattus norvegicus (2)
Caenorhabditis elegans (2)
Oryza sativa Japonica Group (2)
Sus scrofa domesticus (2)
Hypsibius dujardini (1)
Mnemiopsis leidyi (1)
Amphimedon queenslandica (1)
Platynereis dumerilii (1)
Nematostella vectensis (1)
cellular organisms (1)
Halobacterium salinarum NRC-1 (1)
Acinetobacter baumannii AB_TG2631 (1)
Bacillus subtilis subsp. subtilis str. L170 (1)
Conus geographus (1)
Cricetulus griseus (1)
Drosophila erecta (1)
Drosophila persimilis (1)
Drosophila simulans (1)
Drosophila virilis (1)
Leishmania amazonensis (1)
Leishmania infantum (1)

Repository

pride (176)
MetaboLights (30)
biostudies-arrayexpress (22)
MassIVE (8)
GNPS (7)
EGA (2)
iProX (2)
jPOST (2)
PeptideAtlas (1)

Tissue

Cell culture (51)
Epithelial cell (20)
Brain (8)
Blood plasma (7)
Permanent cell line cell (5)
Skin (5)
Blood cell (4)
Keratinocyte (4)
Liver (4)
Embryonic stem cell (3)
Lung (3)
Lymph node (3)
Macrophage (3)
Blood platelet (2)
Cell suspension culture (2)
Corneal endothelial cell (2)
Epithelial cell of prostate (2)
Fibroblast (2)
HEK-293T cell (2)
Hepatocyte (2)
Kidney (2)
Lens (2)
Prostate gland (2)
Root (2)
Spleen (2)
T cell (2)
Adipocyte cell line (1)
Ascites (1)
B cell (1)
Bacterial protein (1)

Disease

Malignant neoplasm of ovary (9)
Disease free (8)
Prostate adenocarcinoma (4)
Breast cancer (3)
Brain cancer (2)
Brain glioblastoma multiforme (2)
Glioblastoma (2)
Non-small cell lung carcinoma (2)
Type 2 diabetes mellitus (2)
Acute leukemia (1)
Asthma (1)
Bronchiolitis obliterans (1)
Cardiomyopathy (1)
Cardiovascular system disease (1)
Cervix carcinoma (1)
Colorectal carcinoma (1)
Cystic fibrosis (1)
Hepatocellular carcinoma (1)
Influenza (1)
Leishmaniasis (1)
Leukemia (1)
Liver cancer (1)
Lung adenocarcinoma (1)
Lung cancer (1)
Lung non-squamous non-small cell carcinoma (1)
Multiple myeloma (1)
Neurodegenerative disease (1)
Ovarian cancer (1)
Parkinson's disease (1)
Salmonella infectious disease (1)

Technology Type

Mass Spectrometry (176)
Shotgun proteomics (97)
Bottom-up proteomics (33)
Mass spectrometry (27)
Affinity purification coupled with mass spectrometry proteomics (18)
Data-dependent acquisition (18)
Gel-based experiment (12)
Top-down proteomics (8)
SWATH MS (7)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Data-independent acquisition (3)
Mass spectrometry assay (2)
NMR spectroscopy (2)
Affinity proteomics (1)
DiaPASEF (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (6)
Liquid Chromatography MS - positive - reverse phase (6)
Agilent GC 7890A coupled with a single quadrupole MSD 5975C (5)
LTQ Velos ETD (5)
Exactive (Thermo Scientific) (4)
Q Exactive (3)
Liquid Chromatography MS - (3)
Q Exactive Plus (2)
LTQ Orbitrap Velos (2)
Q Exactive HF-X (2)
Gas Chromatography MS - (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
Illumina HiSeq 3000 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
ACQUITY UPLC H-Class (1)
TripleTOF 5600 (1)
LTQ Orbitrap (1)
LTQ Orbitrap Elite (1)
Orbitrap Fusion (1)
Orbitrap Fusion ETD (1)
TripleTOF 6600 (1)
Agilent 7890A GC-LECO Pegasus HT TOFMS (1)
Bruker (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)

Publication Date

2025 (34)
2021 (26)
2023 (25)
2019 (25)
2026 (24)
2024 (24)
2022 (23)
2020 (15)
2016 (14)
2018 (12)
2017 (7)
2015 (4)
2012 (4)
2008 (3)
2013 (2)
2010 (2)
2006 (2)
2014 (1)
2007 (1)

CHEBI ID

CHEBI:30769 (11)
CHEBI:6650 (10)
CHEBI:15428 (9)
CHEBI:22653 (8)
CHEBI:15741 (7)
CHEBI:16449 (7)
CHEBI:16919 (7)
CHEBI:17268 (7)
CHEBI:17562 (7)
CHEBI:17822 (7)
CHEBI:17895 (7)
CHEBI:28044 (7)
CHEBI:15354 (6)
CHEBI:15891 (6)
CHEBI:15940 (6)
CHEBI:16196 (6)
CHEBI:16467 (6)
CHEBI:18012 (6)
CHEBI:18050 (6)
CHEBI:18132 (6)
CHEBI:18186 (6)
CHEBI:18237 (6)
CHEBI:22652 (6)
CHEBI:27897 (6)
CHEBI:28300 (6)
CHEBI:32816 (6)
CHEBI:78320 (6)
CHEBI:15422 (5)
CHEBI:15603 (5)
CHEBI:15676 (5)

Metabolite Name

ATP (5)
Alanine (5)
ADP (4)
CMP (4)
Citric acid (4)
FAD (4)
Glutamate (4)
Glycine (4)
L-Arginine (4)
2-hydroxyglutarate (3)
AMP (3)
Alanine (3)
Arginine (3)
Betaine (3)
CDP-choline (3)
CDP-ethanolamine (3)
Citrate (3)
Citrulline (3)
Creatinine (3)
Cytidine (3)
GDP (3)
Glutamine (3)
Glycine (3)
Isoleucine (3)
L-Glutamine (3)
Leucine (3)
Methionine (3)
NAD+ (3)
Oleic acid (3)
Phenylalanine (3)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)
Not available (1)

Study type

Transcription profiling by array (12)
RNA-seq of coding RNA (7)
Animal - High-throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (82)
2021 (81)
2024 (67)
2023 (63)
2025 (56)
2020 (31)
2016 (31)
2018 (29)
2019 (25)
2017 (22)
2013 (17)
2014 (15)
2015 (14)
2012 (12)
2026 (11)
2010 (9)
2009 (6)
2011 (5)
2008 (4)
2007 (1)

Lab affiliation

The Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287 USA (7)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (4)
Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (2)
Center for Theragnosis, Korea Institute of Science and Technology, Seoul, Korea (2)
Centre for Proteome Research, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool, L69 7ZB, U.K (2)
Copenhagen Center for Glycomics, Department of Cellular and Molecular Medicine, University of Copenhagen (2)
Department of Cellular and Molecular Medicine, University of Copenhagen (2)
Dept. of Molecular Biosciences, University of Texas at Austin, Texas 78712 USA (2)
Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Russia (2)
Institute of Biological Chemistry, Academia Sinica, Taipei, 115201, Taiwan Institute of Biochemical Sciences, National Taiwan University, Taipei, 106319, Taiwan International Institute for Sustainability with Knotted Chiral Meta Matter (SKCM2), Hiroshima University, Hiroshima, 739-8511, Japan (2)
Keck MS & Proteomics Resource Yale School of Medicine (2)
Prometabio Research Institute, prometabio co., ltd. (2)
University of Copenhagen, Copenhagen Center for Glycomics (2)
1 Department of Convergence Medicine, Asan Institute for Life Sciences, Asan Medical Center, Seoul 05505, Republic of Korea 2 Department of Biomedical Sciences, University of Ulsan College of Medicine, Seoul 05505, Republic of Korea 3 Clinical Proteomics Core Laboratory, Convergence Medicine Research Center, Asan Medical Center, Seoul 05505, Republic of Korea 4 Bio-Medical Institute of Technology, Asan Medical Center, Seoul 05505, Republic of Korea (1)
1. Department of Chemistry, Korea University, Seoul 02841, Republic of Korea 2. Center for Proteogenome Research, Korea University, Seoul 02841, Republic of Korea (1)
1Department of Pathology, Dana-Farber/Harvard Cancer Center, PhD Program in Immunology, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA (1)
1Disease Target Structure Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 34141, Republic of Korea (1)
Asan Medical Center, Clinical Proteomics Core, Republic of Korea (1)
Assistant professor, School of Biological Sciences, Seoul National University (1)
Associate Professor Glyco MS Group Copenhagen Center for Glycomics (CCG) Department of Cellular and Molecular Medicine University of Copenahgen Blegdamsvej 3 2200 Copenhagen N Denmark (1)
BK21 Plus KNU Multi-Omics Based Creative Drug Research Team, College of Pharmacy, Research Institute of Pharmaceutical Sciences, Kyungpook National University (1)
BK21 Plus KNU Multi-Omics based Creative Drug Research Team, College of Pharmacy, Research Institute of Pharmaceutical Sciences, Kyungpook National University, Republic of Korea (1)
Baylor College of Medicine (1)
Biological Sciences Division, Pacific Northwest National Laboratory (1)
Biologics R&D Group/ Biomedical Program CSIRO Manufacturing Bayview Ave/ Research Way, Clayton, VIC3168 Australia (1)
Biomedicine Discovery Institute and Department of Biochemistry & Molecular Biology, Monash University, Melbourne, VIC, Australia (1)
Biprocessing Technology Institute (BTI), Agency for ScieNce, Technology and Research (A*STAR) (1)
Brainstorm Brain Cancer Research, Brain and Mind Centre, University of Sydney, NSW, Australia School of Life and Environmental Science, University of Sydney, New South Wales, Australia (1)
Broad Institute (1)
Calico Life Sciences (1)

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Loss of SPTSSA Impairs Mitochondrial Function and Neuronal Differentiation in SH-SY5Y Neuroblastoma Cells

Sphingolipids are bioactive membrane and signaling lipids that not only shape cellular architecture but also orchestrate a network of interconnected metabolic pathways. Their core building blocks, sphingoid bases, are synthesized by the serine palmitoyltransferase (SPT) complex. At its core, the SPT...

2026-10-09 | MTBLS15875 | MetaboLights

A large-scale metabolomics study to harness chemical diversity and explore biochemical mechanisms in ryegrass (UPLC-MS HILIC POS assay)

Perennial ryegrass (Lolium perenne) is integral to temperate pastoral agriculture, which contributes most of the milk and meat production worldwide. Chemical profiles and diversity of ryegrass offer several opportunities to harness specific traits and elucidate underlying biological mechanism...

2019-03-01 | MTBLS62 | MetaboLights

Searching for Sulfotyrosines (sY) in a H A( pY ) STACK

Protein sulfation can be crucial in regulating protein-protein interactions but remains largely underexplored. Sulfation is near-isobaric to phosphorylation, making it particularly challenging to investigate using mass spectrometry. The degree to which tyrosine sulfation (sY) is misidentified as pho...

ORGANISM(S): Homo sapiens (Human)

2025-05-07 | PXD059650 | Pride

A large-scale metabolomics study to harness chemical diversity and explore biochemical mechanisms in ryegrass (UPLC-MS HILIC NEG assay)

2019-03-01 | MTBLS63 | MetaboLights

A large-scale metabolomics study to harness chemical diversity and explore biochemical mechanisms in ryegrass (UPLC-MS C18 reverse phase POS assay)

2019-03-01 | MTBLS64 | MetaboLights

A large-scale metabolomics study to harness chemical diversity and explore biochemical mechanisms in ryegrass (UPLC-MS C18 reverse phase NEG assay)

2019-03-01 | MTBLS65 | MetaboLights

An Integrated Biochemical, Proteomics, and Metabolomics Approach for Supporting Medicinal Value of Panax ginseng Fruits (GC-MS assay)

Panax ginseng roots are well known for their medicinal properties and have been used in Korean and Chinese traditional medicines for 1000s of years. However, the medicinal value of P. ginseng fruits remain poorly characterized. Using gas chromatography-time of flight mass spectrometry (GC-TOF MS), 6...

2016-11-18 | MTBLS350 | MetaboLights

Two UGT84A Family Glycosyltransferases Regulate Phenol, Flavonoid, and Tannin Metabolism in Juglans regia (English Walnut)

We showed previously that gallic acid is produced in walnut from 3-dehydroshikimate by a shikimate dehydrogenase (JrSkDH). This study focuses on the next step in the hydrolysable tannin pathway, the formation of 1-O-galloyl-β-D-glucose from the phenolic gallic acid and UDP glucose by a glycos...

2022-10-11 | MTBLS2042 | MetaboLights

Exploring the Reaction Mechanism of H₂S Decomposition with MS₃ (M = Mo, W) Clusters.

Not available

S-EPMC7288710 | biostudies-literature

A bespoke analytical workflow for the identification of sulfopep-tides and confident discrimination from phosphopeptides_C4PR_LIV

Protein tyrosine sulfation (sY) is a post-translational modification (PTM) catalysed by Golgi-resident Tyrosyl Protein Sul-foTransferases (TPSTs). Information on protein tyrosine sulfation is currently limited to ~50 human proteins with only a handful of those having verified sites of sulfation. The...