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MetabolomicsEicosanoid-immunometabotypes reveal genotypic links to cervicovaginal pH in progestagen synchronized South African Dohne Merino ewes
Eicosanoid-immunometabotypes reveal genotypic links to cervicovaginal pH in progestagen synchronized South African Dohne Merino ewes.
2026-07-16 | MTBLS14823 | MetaboLights
MetabolomicsMetabolomic profiling of primary mouse proximal tubule cells (mPTCs) derived from 24-week-old CTR and Atg7 PT-KO kidneys
To explore the role of ATG7 in the kidney PT, we crossed mice homozygous for floxed alleles of Atg7 with Ggt1-Cre mice expressing Cre recombinase under the rat Ggt1 (gamma-glutamyltransferase 1) gene promoter. This generated Atg7fl/fl; γGt1cre/cre mice (hereafter referred to as Atg7 PT-KO), in which...
2026-09-30 | MTBLS15857 | MetaboLights
OtherZanthoxylum mzML data acquired using Waters Acquity UPLC linked to Synapt G2 qTOF HDMS
Zanthoxylum species metabolic profiling using waters Acquity UPLC-Synapt G2 qTOF
ORGANISM(S): Zanthoxylum (ncbitaxon:67937) 
2021-09-02 | MSV000088044 | MassIVE
MetabolomicsGNPS Zanthoxylum mzML data acquired using Waters Acquity UPLC linked to Synapt G2 qTOF HDMS
Zanthoxylum species metabolic profiling using waters Acquity UPLC-Synapt G2 qTOF
ORGANISM(S): Zanthoxylum (ncbitaxon:67937) 
MSV000088044 | GNPS
ProteomicsA comprehensive LFQ benchmark dataset to validate data analysis pipelines on modern day acquisition strategies in proteomics
A comprehensive LFQ benchmark dataset to validate data analysis pipelines on modern day acquisition strategies in proteomics using SCIEX TripleTOF5600 and 6600+, Orbitrap QE-HFX, Waters Synapt GS-Si and Synapt XS and Bruker timsTOF Pro.
ORGANISM(S): Candida albicans (Yeast) Homo sapiens (Human) Escherichia coli 
2022-02-14 | PXD028735 | Pride
Swath Dia Benchmark 
UnknownIncreasing Collisional Activation of Protein Complexes Using Smaller Aperture Source Sampling Cones on a Synapt Q-IM-TOF Instrument with a Stepwave Source.
Not available
S-EPMC7855748 | biostudies-literature
ProteomicsExample Waters FastDDA data set
Example FastDDA raw data collected on a Waters Synapt XS. Negative Mode. No promises on the calibration and accuracy; just putting it up for testing purposes.
ORGANISM(S): Escherichia Coli (ncbitaxon:562) 
2023-02-27 | MSV000091372 | MassIVE
ProteomicsMass spectrometry based quantitative proteome analyses for the import mutants ppi2 and tic56-1 as well as for spectinomycin treated Arabidopsis thalian plants
We acquired quantitative proteomics data from eight week old ppi2 and tic56-1 mutants as well as from wild type treated with 60 µg/ml spectinomycin and related them to their respective wildtype reference. Protein identification and quantification was performed by data-independent MSE acquisition on ...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2016-12-14 | PXD004125 | Pride
Hdmse Tic56-1 Plastid Spectinomycin Plastidic translation Quantitative mass spectrometry Shotgun proteomics Toc-tic-import machinery Hi3 quantification Ppi2 
ProteomicsPytheas E. coli 16S rRNA sample analysis
Mass spectrometry remains an important method for analysis of modified nucleosides ubiquitously present in cellular RNAs, in particular for ribosomal and transfer RNAs that play crucial roles in mRNA translation and decoding. Furthermore, modifications have effect on the lifetimes of nucleic acids i...
ORGANISM(S): Escherichia coli 
2022-05-04 | PXD030538 | Pride
16s Rna Ribosome Isotope labeling Pytheas 
MetabolomicsUnravelling altered RNA metabolism in pancreatic cancer cells by liquid-chromatography coupling to ion mobility mass spectrometry
Ion mobility coupling to mass spectrometry facilitates an increase of resolution and chromatographic peak-capacity. Further coupling to liquid chromatography results in multi-dimensional analytical methods, especially suitable for complex matrices with structurally similar compounds. Modified nucleo...
2019-05-16 | MTBLS812 | MetaboLights
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