Synapt g2 si - OmicsDI

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Proteomics (326)
Metabolomics (34)
Unknown (16)
Other (2)

Organisms

Acidithiobacillus ferrooxidans ATCC 53993 (273)
Aerococcus urinae NBRC 15544 = CCUG 36881 (273)
Allexis (273)
Arabidopsis thaliana (273)
Cyanophora paradoxa (273)
Ensifer adhaerens (273)
Enterococcus faecalis (273)
Globicatella sanguinis (273)
Histomonas meleagridis (273)
Human immunodeficiency virus 1 (273)
Leishmania major strain Friedlin (273)
Listeria monocytogenes (273)
Lotus japonicus (273)
Marchantia polymorpha (273)
Medicago truncatula (273)
Methylohalobius crimeensis 10Ki (273)
Mus musculus (273)
Mycobacterium tuberculosis (273)
Ophrys garganica (273)
Ophrys sphegodes (273)
Oryza sativa Indica Group (273)
Physcomitrium patens (273)
Pseudomonas putida KT2440 (273)
Rattus norvegicus (273)
Schizosaccharomyces pombe 927 (273)
Schizosaccharomyces pombe 972h- (273)
Homo sapiens (2)
Actinomycetota (1)
Bacillus sp. (in: firmicutes) (1)
Solidesulfovibrio magneticus RS-1 (1)

Repository

pride (273)
MassIVE (53)
MetaboLights (19)
GNPS (15)
jPOST (2)

Tissue

Cell culture (42)
Plant cell (32)
Blood plasma (12)
Leaf (12)
Permanent cell line cell (10)
Brain (9)
Fibroblast (7)
Root (7)
Blood (6)
Epithelial cell (6)
Blood serum (4)
Cell suspension culture (4)
Heart (4)
Blood cell (3)
Kidney (3)
Liver (3)
Photosynthetic cell (3)
Shoot (3)
T cell (3)
Callus culture (2)
Cardiac muscle cell (2)
Cerebrospinal fluid (2)
HeLa cell (2)
Macrophage (2)
Oligodendrocyte precursor cell (2)
Seed (2)
Skin (2)
Stem cell (2)
Subcutaneous adipose tissue (2)
Thymus (2)

Disease

COVID-19 (9)
Disease free (9)
Breast cancer (5)
Acute leukemia (4)
Schizophrenia (3)
Spinal muscular atrophy (3)
Toxoplasmosis (3)
Cervix carcinoma (2)
Malignant neoplasm of ovary (2)
Miscarriage (2)
Obesity (2)
Oropharynx cancer (2)
Paranoid schizophrenia (2)
Tuberculosis (2)
Abdominal obesity-metabolic syndrome (1)
Acrodysostosis (1)
Alzheimer's disease (1)
Amyotrophic lateral sclerosis (1)
Autoimmune lymphoproliferative syndrome (1)
Azoospermia (1)
Brain ischemia (1)
Cardiovascular system disease (1)
Celiac disease (1)
Charcot-Marie-Tooth disease (1)
Chikungunya (1)
Cholera (1)
Chronic pain (1)
Down syndrome (1)
Lyme disease (1)
Parkinson's disease (1)

Technology Type

Mass Spectrometry (273)
HDMSE (155)
Shotgun proteomics (82)
MSE (44)
Bottom-up proteomics (36)
Data-independent acquisition (20)
Mass spectrometry (16)
Affinity purification coupled with mass spectrometry proteomics (7)
Top-down proteomics (7)
All-ion fragmentation (5)
Data-dependent acquisition (5)
Mass spectrometry assay (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Gel-based experiment (3)
SWATH MS (2)
Glycoproteomics (1)
Mass spectrometry imaging (1)
PAcIFIC (1)

Instrument Platform

SYNAPT G2-Si (59)
Liquid Chromatography MS - positive - reverse phase (8)
Liquid Chromatography MS - negative - reverse phase (6)
MALDI SYNAPT G2-Si (3)
Direct infusion MS - negative (3)
Waters Synapt G2-Si (2)
Q Exactive (2)
TSQ Altis (2)
Xevo G2 XS Tof (2)
Xevo G2-XS QTof (2)
ACQUITY UPLC (2)
Waters SYNAPT G2-Si (2)
MS Imaging - (2)
Liquid Chromatography MS - positive - hilic (2)
Q-Exactive Orbitrap (1)
ACQUITY UPLC I-Class (1)
Orbitrap Exploris 480 (1)
Q Exactive HF (1)
Q Exactive Plus (1)
Synapt G2 HDMS (1)
Synapt G2-Si HDMS (1)
Wates I-Class/XEVO-G2 XS QTOF (1)
SYNAPT G2 HDMS (Waters) (1)
Liquid Chromatography MS - negative - capillary-hilic-/-beh-amide (1)
Diode array detection MS - negative - reverse phase (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Direct infusion MS - positive (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)

Publication Date

2025 (78)
2024 (51)
2022 (51)
2023 (44)
2021 (33)
2020 (32)
2019 (24)
2026 (21)
2018 (14)
2017 (4)
2015 (2)
2016 (1)

CHEBI ID

CHEBI:10056 (2)
CHEBI:61683 (2)
CHEBI:81149 (2)
CHEBI:30805 (2)
CHEBI:17126 (2)
CHEBI:16196 (2)
CHEBI:75826 (1)
CHEBI:145201 (1)
CHEBI:75651 (1)
CHEBI:19950 (1)
CHEBI:75672 (1)
CHEBI:27395 (1)
CHEBI:136610 (1)
CHEBI:34122 (1)
CHEBI:31558 (1)
CHEBI:75435 (1)
CHEBI:80879 (1)
CHEBI:82259 (1)
CHEBI:144390 (1)
CHEBI:82755 (1)
CHEBI:6958 (1)
CHEBI:9718 (1)
CHEBI:29000 (1)
CHEBI:79634 (1)
CHEBI:144389 (1)
CHEBI:77011 (1)
CHEBI:138831 (1)
CHEBI:18092 (1)
CHEBI:75370 (1)
CHEBI:144414 (1)

Metabolite Name

TAG 10:0-16:0-16:0 (1)
Pyrazine, 2,5-dimethyl- (1)
Butanethioic acid, S-methyl ester (1)
Pyrazine, methyl- (1)
Methane, isocyanato- (1)
Theronine (1)
Adenosylhomocysteine (1)
Kaempferol 3-(4''-(E)-p-coumarylrobinobioside)-7-rhamnoside isomer (1)
Linalool primeveroside isomer (1)
Camellikaempferoside B (1)
Camellikaempferoside C isomer (1)
Sarmenoside II (1)
Camelliquercetiside A isomer (1)
Quercetin 3-triglucoside-7-rhamnoside-p-coumaroyl isomer (1)
Kaempferol 3-(2"-rhamnosyl-6"-acetylgalactoside) 7-rhamnoside (1)
Epiafzelechin 3-gallate (1)
Epicatechin 3-(3-O-methylgallate) (1)
Kaempferol 3-O-[2"-(4'"-acetyl-rhamnosyl)-6"-glucosyl] glucoside isomer (1)
Kaempferol 3-neohesperidoside-7-rhamnoside (1)
ECG-EGCG dimer (1)
Kaempferol 3-O-glucosyl rutinoside (1)
Tricetin (1)
Epicatechin 3-O-gallate (1)
Kaempferol 3-O-galactosyl rutinoside (1)
Camellianin B (1)
Epiafzelechin 3-O-gallate-(4�¡�6)-epigallocatechin 3-O-gallate (1)
Epigallocatechin 3-(3-O-methylgallate) (1)
Quercetin 3-O-glucosyl rutinoside (1)
Quercetin 3-(2''-p-hydroxybenzoyl-4''-p-coumaroylrhamnoside) (1)
Quercetin 3-O-galactosyl rutinoside (1)

Modification

0.984 (2)
15.99491 (2)
57.02146 (2)
43.00581 (1)
N6 (1)
Not available (1)

Release Date

2023 (3)
2025 (2)
2020 (2)
2019 (2)
2024 (1)
2022 (1)
2021 (1)
2018 (1)
2015 (1)
2014 (1)
2013 (1)

Lab affiliation

Department of Chemistry & Chemical Biology, Northeastern University (14)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (8)
Northeastern University (6)
Protein Analysis Group, Department of Pharmacy, University of Copenhagen, Copenhagen, Denmark (4)
School of Life Sciences, The Chinese University of Hong Kong (4)
Department of Chemistry and Biochemistry, The University of Texas at Dallas (3)
Department of Pharmaceutical Biosciences, Uppsala University (3)
Institute of Biology Leiden, Leiden University (3)
Molecular Physiology, Leiden Institute for Chemistry, Leiden University, The Netherlands (3)
ProteoToul, Institute of Pharmacology and Structural Biology (IPBS), CNRS, Toulouse (3)
1 Department of Otorhinolaryngology - Head and Neck Surgery, University of Helsinki and HUS Helsinki University Hospital, P.O.Box 263, FI-00029 HUS, Helsinki, Finland 2 Department of Biosciences and Nutrition, Karolinska Institutet, SE-171 76, Stockholm, Sweden. 3 Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki, Finland. (2)
1. Laboratório de Neurofisiologia, Departamento de Ciências Fisiológicas, Instituto de Biologia Roberto Alcantara Gomes, Universidade do Estado do Rio de Janeiro (UERJ), Av. Prof. Manuel de Abreu 444, 5 andar – Vila Isabel, Rio de Janeiro, RJ, 20550-170, Brazil. (2)
Associate Professor, University of Washington (2)
Center for Biotechnology and Department of Botany, Federal University of Rio Grande do Sul, Porto Alegre, P.O. Box 15005, 91501-970, Brazil (2)
Departamento de Fisiologia e Biofisica, Universidade Federal de Minas Gerais (2)
Department of Chemistry & Chemical biology, Northeastern University (2)
Department of Chemistry, King’s College London, SE1 1DB, London, UK Faculty of Biology, Medicine and Health, School of Biological Sciences, The University of Manchester, M13 9PT, Manchester, UK Manchester Institute of Biotechnology, The University of Manchester, M1 7DN, Manchester, UK (2)
Department of Genetics and Molecular Biology, Cinvestav-IPN (2)
Dept. of Biochemistry, Laboratory of Neuroproteomic, Biology Institute, Brazil (2)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia Universidade Estadual do Norte Fluminense Darcy Ribeiro Av. Alberto Lamego 2000 Campos dos Goytacazes-RJ, Brazil 28013-602 (2)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (2)
Neuroproteomics Group Department of Molecular Neurobiology Max Planck Institute for Multidisciplinary Sciences Hermann-Rein-Str. 3 37075 Goettingen Germany (2)
Protein Biogenesis Lab, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT (2)
Proteomics, Max Planck Institute of Biophysics, Frankfurt am Main, Germany (2)
Research Centre for Genetic Engineering and Biotechnology “Georgi D Efremov”, Macedonian Academy of Sciences and Arts, Skopje, Krste Misirkov 2, 1000 Skopje, Republic of North Macedonia (2)
School of Biological and Behavioural Sciences Queen Mary University of London (2)
The University of Manchester (2)
Transplantation laboratory, Faculty of Medicine, University of Helsinki, Helsinki, 00290, Finland (2)
Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Centro de Biociências e Biotecnologia, Laboratório de Química e Função de Proteínas e Peptídeos, Prédio P5, Sala 228, Bairro Parque Califórnia, Campos dos Goytacazes, RS - CEP: 28013-602 (2)
University College London ISMB (2)

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Structural basis for allosteric regulation of the proteasome core particle

HDX-MS data comparing deuteration of the M. tuberculosis proteasome core particle across four protein states (WT, T1A, OG and Ixazomib-bound) collected on a SYNAPT G2-Si.

ORGANISM(S): Mycobacterium Tuberculosis (ncbitaxon:1773)

MSV000095758 | MassIVE

Identification of dystrophin Dp71dΔ71 associated proteins in PC12 cells by quantitative proteomics

Dystrophin Dp71 is the main product of the DMD (Duchenne muscular dystrophy) gene in the brain. Dystrophin Dp71 is essential for the development of the nervous system and its alteration is associated with intellectual disability. Different isoforms of Dp71, with different subcellular locations, are ...

ORGANISM(S): Rattus norvegicus (Rat)

2024-11-01 | PXD021886 | Pride

GNPS Annotation of natural product compound families using molecular networking topology and structural similarity fingerprinting

Peak-picked features with intensity > 100k from 156 marine actinobacteria analyzed by HDMSe on a Waters Synapt G2-Si

ORGANISM(S): Marine Actinobacteria

2022-06-17 | MSV000089680 | GNPS

Faustovirus global proteome - Faustovirus, an asfarvirus-related new lineage of giant viruses infecting amoebae

Global proteome study of two protein extracts of purified Faustovirus, using a bi dimensionnal nanoLC fractionnation combined to a Synapt G2 Si HDMSe monitoring enabling ion mobility

ORGANISM(S): Faustovirus

2015-04-22 | PXD001858 | Pride

Nano2dlc-ms/ms Faustovirus Ion mobility

Tupavirus global proteome - Tailed giant Tupanvirus possesses the most complete translational apparatus of the known virosphere

Global proteome study of protein extracts of purified Tupavirus, using a bidimensionnal nanoLC fractionnation combined to a Synapt G2 Si HDMSe monitoring enabling ion mobility

ORGANISM(S): Tupavirus

2018-10-24 | PXD007583 | Pride

Nano2dlc-ms/ms Tupavirus Tupanvirus Biological Rhabdoviridae Ion mobility

Proteomic characterization of the pellicle of Toxoplasma gondii

Toxoplasma gondii is an obligate intracellular parasite. The ability to invade cells and proliferate successfully is given by the machinery found in the pellicle of the parasite, the pellicle is a complex of three membranes. Despite the importance of the pellicle in the biology of Toxoplasma, its pr...

ORGANISM(S): Toxoplasma gondii

2021-02-16 | PXD022398 | Pride

Toxoplasma Mass spectrometry Protein quantification Adhesion Srs Pellicle

Metabolomic profiling of primary mouse proximal tubule cells (mPTCs) derived from 24-week-old CTR and Atg7 PT-KO kidneys

To explore the role of ATG7 in the kidney PT, we crossed mice homozygous for floxed alleles of Atg7 with Ggt1-Cre mice expressing Cre recombinase under the rat Ggt1 (gamma-glutamyltransferase 1) gene promoter. This generated Atg7fl/fl; γGt1cre/cre mice (hereafter referred to as Atg7 PT-KO), in which...

2026-09-30 | MTBLS15857 | MetaboLights

Increasing Collisional Activation of Protein Complexes Using Smaller Aperture Source Sampling Cones on a Synapt Q-IM-TOF Instrument with a Stepwave Source.

Not available

S-EPMC7855748 | biostudies-literature

Discovery of megapolipeptins by genome mining of a Burkholderiales bacteria collection

This repository contains Waters .raw files from the manuscript entitled "Discovery of megapolipeptins by genome mining of a Burkholderiales bacteria collection". The dataset contains positive and negative MS data for megapolipeptin A and B, as well as the positive MS data for the methyl ester deriva...

ORGANISM(S): Bacteria (ncbitaxon:2) Burkholderia (ncbitaxon:32008)

2024-05-31 | MSV000094914 | MassIVE

Expression profiles of kidney mitochondrial proteome during the progression of the unilateral ureteral obstruction: focus on energy metabolism adaptions.

Obstructive nephropathy (ON) is a common clinical entity caused by different etiologies such as urolithiasis, prostatic hyperplasia in males, tumors, congenital stenosis, and others. Unilateral ureteral obstruction (UUO) in rodents is an experimental model widely used to explore the pathophysiology ...