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ProteomicsStructural basis for allosteric regulation of the proteasome core particle
HDX-MS data comparing deuteration of the M. tuberculosis proteasome core particle across four protein states (WT, T1A, OG and Ixazomib-bound) collected on a SYNAPT G2-Si.
ORGANISM(S): Mycobacterium Tuberculosis (ncbitaxon:1773) 
MSV000095758 | MassIVE
ProteomicsIdentification of dystrophin Dp71dΔ71 associated proteins in PC12 cells by quantitative proteomics
Dystrophin Dp71 is the main product of the DMD (Duchenne muscular dystrophy) gene in the brain. Dystrophin Dp71 is essential for the development of the nervous system and its alteration is associated with intellectual disability. Different isoforms of Dp71, with different subcellular locations, are ...
ORGANISM(S): Rattus norvegicus (Rat) 
2024-11-01 | PXD021886 | Pride
Quantitative proteomics. Dp71 Protein interaction Dmd 
MetabolomicsGNPS Annotation of natural product compound families using molecular networking topology and structural similarity fingerprinting
Peak-picked features with intensity > 100k from 156 marine actinobacteria analyzed by HDMSe on a Waters Synapt G2-Si
ORGANISM(S): Marine Actinobacteria 
2022-06-17 | MSV000089680 | GNPS
ProteomicsProteomic characterization of the pellicle of Toxoplasma gondii
Toxoplasma gondii is an obligate intracellular parasite. The ability to invade cells and proliferate successfully is given by the machinery found in the pellicle of the parasite, the pellicle is a complex of three membranes. Despite the importance of the pellicle in the biology of Toxoplasma, its pr...
ORGANISM(S): Toxoplasma gondii 
2021-02-16 | PXD022398 | Pride
Toxoplasma Mass spectrometry Protein quantification Adhesion Srs Pellicle 
ProteomicsDiscovery of megapolipeptins by genome mining of a Burkholderiales bacteria collection
This repository contains Waters .raw files from the manuscript entitled "Discovery of megapolipeptins by genome mining of a Burkholderiales bacteria collection". The dataset contains positive and negative MS data for megapolipeptin A and B, as well as the positive MS data for the methyl ester deriva...
ORGANISM(S): Bacteria (ncbitaxon:2) Burkholderia (ncbitaxon:32008) 
2024-05-31 | MSV000094914 | MassIVE
ProteomicsTupavirus global proteome - Tailed giant Tupanvirus possesses the most complete translational apparatus of the known virosphere
Global proteome study of protein extracts of purified Tupavirus, using a bidimensionnal nanoLC fractionnation combined to a Synapt G2 Si HDMSe monitoring enabling ion mobility
ORGANISM(S): Tupavirus 
2018-10-24 | PXD007583 | Pride
Nano2dlc-ms/ms Tupavirus Tupanvirus Biological Rhabdoviridae Ion mobility 
ProteomicsFaustovirus global proteome - Faustovirus, an asfarvirus-related new lineage of giant viruses infecting amoebae
Global proteome study of two protein extracts of purified Faustovirus, using a bi dimensionnal nanoLC fractionnation combined to a Synapt G2 Si HDMSe monitoring enabling ion mobility
ORGANISM(S): Faustovirus 
2015-04-22 | PXD001858 | Pride
Nano2dlc-ms/ms Faustovirus Ion mobility 
ProteomicsExpression profiles of kidney mitochondrial proteome during the progression of the unilateral ureteral obstruction: focus on energy metabolism adaptions.
Obstructive nephropathy (ON) is a common clinical entity caused by different etiologies such as urolithiasis, prostatic hyperplasia in males, tumors, congenital stenosis, and others. Unilateral ureteral obstruction (UUO) in rodents is an experimental model widely used to explore the pathophysiology ...
ORGANISM(S): Rattus norvegicus (Rat) 
2022-10-18 | PXD036205 | Pride
Kidney fibrosis Mitochondria proteome Energy metabolism. Unilateral ureteral obstruction (uuo) 
ProteomicsUntargeted metabolomic analysis of 14 yellow dye plants
14 yellow dye plants were extracted in triplicate in a mixture of MeOH/H2O 1:1 (v/v). LC-HRMS/MS analysis was performed with a Waters SYNAPT G2-Si mass spectrometer. ESI+ and ESI- data were obtained using Fast DDA (data-dependent acquisition) mode and a collision energy ramp from 10-40 V (m/z 50) to...
ORGANISM(S): Cotinus Coggygria (ncbitaxon:269719) Hypericum Perforatum (ncbitaxon:65561) Datisca Cannabina (ncbitaxon:34296) Styphnolobium Japonicum (ncbitaxon:3897) Rhamnus Cathartica (ncbitaxon:3610) Punica Granatum (ncbitaxon:22663) Maclura Tinctoria (ncbitaxon:681456) Helichrysum Stoechas (ncbitaxon:261805) Reseda Luteola (ncbitaxon:415813) Rhamnus Saxatilis (ncbitaxon:280025) Maclura Pomifera (ncbitaxon:3496) Berberis Vulgaris (ncbitaxon:258209) Carthamus Tinctorius (ncbitaxon:4222) Rhamnus Alaternus (ncbitaxon:280017) 
2025-08-21 | MSV000098899 | MassIVE
ProteomicsMultiplexMS: A mass spectrometry-based multiplexing strategy for ultra-high-throughput analysis of complex mixtures
This repository contains Waters .raw files from the MultiplexMS publication. There are 4 experiments described in the paper - each experimental MS files are contained within its own folder with a description of the experiment. Data was collected on a Waters UPLC i-class and SYNAPT G2-Si QTof mass sp...
ORGANISM(S): Bacteria (ncbitaxon:2) Burkholderia (ncbitaxon:32008) Marine Actinobacteria Clade (ncbitaxon:62676) 
2022-12-15 | MSV000090912 | MassIVE
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