Synaptic adhesion molecules

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Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (2)
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Lab affiliation

Institute for Cell and molecular Biosciences (ICAMB) Faculty of medical Sciences, Newcastle University Framlington place Newcastle Upon Tyne, NE2 4HH, UK (1)
Synapse Development and Plasticity Research Unit, Institut de Recherches Cliniques de Montréal, Montreal, Quebec, H2W 1R7, Canada Integrated Program in Neuroscience, McGill University, Montreal, Quebec, H3A 2B2, Canada Department of Medicine, Université de Montréal, Montreal, Quebec, H3T 1J4, Canada Division of Experimental Medicine, McGill University, Montreal, Quebec, H3A 0G4, Canada (1)
Department of Molecular Biophysics and Biochemistry, Yale University, Keck MS & Proteomics Resource at Yale. (1)
Institute of Physiology II, Universität Freiburg, Germany (1)
Yale University (Keck MS & Proteomics Resource) (1)
Professor Dept of Chemistry Scripps Research Institute (1)
Yale University, New Haven, CT 06511 (1)
University of Basel, Biozentrum, Switzerland (1)
Synapse Development and Plasticity research unit Institut de recherches cliniques de Montréal (IRCM) 110, avenue des Pins Ouest – Laboratory 5340 Montréal (Quebec) Canada H2W 1R7 (1)
Professor, Ophtalmology, School of Medicine, University of California, Sam Fancisco (UCSF) (1)
Korea Basic Science Institute (1)
Max Planck Institute for Brain Research Max Planck Institute of Biophysics (1)
University of California, San Francisco (1)

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Membrane trafficking of synaptic adhesion molecules.

Not available

S-EPMC12559978 | biostudies-literature

Interplay between cell-adhesion molecules governs synaptic wiring of cone photoreceptors.

Not available

S-EPMC7519344 | biostudies-literature

Synaptic adhesion molecule IgSF11 regulates synaptic transmission and plasticity.

Not available

S-EPMC5010778 | biostudies-literature

Identification of palmitoyl protein thioesterase 1 substrates defines roles for synaptic depalmitoylation

We report here the identification of substrates of the depalmitoylating enzyme PPT1 by quantitative mass spectrometry. We utilized a stringent two-step Acyl Resin-Assisted Capture (Acyl RAC) screen in which increased palmitoylation in vivo in PPT1 knockout is the first selection criteria for substra...

ORGANISM(S): Mus musculus (Mouse)

2022-05-19 | PXD017270 | Pride

Analysis of adhesion molecules and basement membrane contributions to synaptic adhesion at the Drosophila embryonic NMJ.

Not available

S-EPMC3340374 | biostudies-literature

N-glycoproteomics of brain synapses and synaptic vesicles

At mammalian neuronal synapses, synaptic vesicle (SV) glycoproteins are essential for robust neurotransmission. Asparagine (N)-linked glycosylation is required for delivery of the major SV glycoproteins synaptophysin and SV2A to SVs. Despite this key role for N-glycosylation, the molecular compositi...

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2023-03-18 | MSV000091507 | MassIVE

N-glycosylation at the SynCAM (synaptic cell adhesion molecule) immunoglobulin interface modulates synaptic adhesion.

Not available

S-EPMC2966101 | biostudies-literature

SALM4 suppresses excitatory synapse development by cis-inhibiting trans-synaptic SALM3-LAR adhesion.

Not available

S-EPMC4974644 | biostudies-literature

Long non-coding RNAs and microRNAs involved in integrated co-regulation of neuronal maturation [microRNA expression]

Neurogenesis is a pro-survival process that comprises of dendritic and axonal growth, synaptogenesis, synaptic and neuronal pruning. These complex processes are determined by temporal gene expression during development, which is in turn tightly regulated by long non-coding RNAs and microRNAs. In thi...

ORGANISM(S): Mus musculus

2014-10-24 | E-GEOD-44832 | biostudies-arrayexpress

LAR-RPTP Clustering Is Modulated by Competitive Binding between Synaptic Adhesion Partners and Heparan Sulfate.

Not available

S-EPMC5645493 | biostudies-literature