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ProteomicsSynthetic (Phospho)Peptide Library
The submitted dataset contains raw files from 96 synthetic peptide libraries, using either HCD or ETD as fragmentation technique. The synthesized 96 tryptic peptide libraries containing >100,000 unmodified peptides plus their corresponding >100,000 phosphorylated counterparts with precisely known s...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2023-04-14 | MSV000091718 | MassIVE
ProteomicsSynthetic (Phospho)Peptide Library
The submitted dataset contains raw files from 96 synthetic peptide libraries, using either HCD or ETD as fragmentation technique. The synthesized 96 tryptic peptide libraries containing >100,000 unmodified peptides plus their corresponding >100,000 phosphorylated counterparts with precisely known s...
ORGANISM(S): Homo sapiens (Human) 
2013-05-05 | PXD000138 | Pride
Synthetic library Hcd Etd 
ProteomicsPTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline
Analysis of synthetic peptide reference datasets to demonstrate the performance of PTMProphet, a free and open-source software tool integrated into the Trans-Proteomic Pipeline, which reanalyzes identified spectra from any search engine for which pepXML output is available to provide localization co...
ORGANISM(S): Homo sapiens (Human) 
2019-07-18 | PXD013210 | Pride
Site localization Synthetic phospho-peptides Human Lc-ms/ms 
ProteomicsTyrosine phosphorylation site-specific interactome of adaptor protein Shc1 explored by synthetic protein domains
As a critical adaptor protein, Shc1 contains SH2 and PTB domains for scaffolding tyrosine phosphorylation-dependent protein complexes, therefore regulating growth factor receptor signaling networks. The three tyrosine phosphorylation sites (pY) on the CH1 linker region of SHC1 provide additional doc...
ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human) 
2024-08-15 | PXD049113 | Pride
Tyrosine phosphorylation Signal transduction Shc1 Mass spectrometry Ch1 region 
ProteomicsSpecialisation of meiotic kinetochores revealed through a synthetic spindle assembly checkpoint strategy.
Meiosis creates haploid gametes through two sequential M phases. While many studies have focused on meiosis I, the molecular events which drive and define meiosis II are largely unknown. Here, we report a novel cell synchronization strategy which allows for collection of yeast cells arrested at meta...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2026-03-04 | PXD067911 | Pride
TranscriptomicsDeletion of the Saccharomyces cerevisiae ARO8 gene, encoding an aromatic amino acid transaminase, enhances phenylethanol production from glucose
Its characteristic rose-like aroma makes phenylethanol a popular ingredient in foods, beverages and cosmetics. Microbial production of phenylethanol currently relies on whole-cell bioconversion of phenylalanine with yeasts that harbor an Ehrlich pathway for phenylalanine catabolism. Complete biosynt...
ORGANISM(S): Saccharomyces cerevisiae 
2014-03-19 | E-GEOD-52256 | biostudies-arrayexpress
ProteomicsEvaluation of library-free strategies for phosphoproteomics and ubiquitinomics data-independent acquisition data
Phosphoproteomics and ubiquitinomics data-independent acquisition MS data is generally analyzed using a DDA spectral library. Performance of different library-free strategies of analyzing phosphoproteomics and ubiquitinomics DIA MS data are not evaluated. In this study, we assess three library-free ...
ORGANISM(S): Homo Sapiens 
PXD037870 |
ProteomicsEnhanced Access to the Human Phosphoproteome with Genetically Encoded Phosphothreonine
Protein phosphorylation is a ubiquitous post-translational modification that governs signaling cascades and protein-protein interactions. Orthogonal translation systems repurpose evolutionarily divergent aminoacyl-tRNA synthetase and tRNA pairs for the co-translational insertion of a modified amino ...
ORGANISM(S): Escherichia coli 
2022-11-11 | PXD026422 | Pride
Synthetic biology Proteomics Phosphoproteome Phosphoprotein interactions Checkpoint kinase 2 14-3-3 Kinase Orthogonal translation system Genetic code expansion phosphothreonine 
ProteomicsEnhanced Access to the Human Phosphoproteome with Genetically Encoded Phosphothreonine
Protein phosphorylation is a ubiquitous post-translational modification that governs signaling cascades and protein-protein interactions. Orthogonal translation systems repurpose evolutionarily divergent aminoacyl-tRNA synthetase and tRNA pairs for the co-translational insertion of a modified amino ...
ORGANISM(S): Escherichia coli 
2022-11-11 | PXD026423 | Pride
Synthetic biology Proteomics Phosphoproteome Phosphoprotein interactions Checkpoint kinase 2 14-3-3 Kinase Orthogonal translation system Genetic code expansion phosphothreonine 
ProteomicsEnhanced Access to the Human Phosphoproteome with Genetically Encoded Phosphothreonine
Protein phosphorylation is a ubiquitous post-translational modification that governs signaling cascades and protein-protein interactions. Orthogonal translation systems repurpose evolutionarily divergent aminoacyl-tRNA synthetase and tRNA pairs for the co-translational insertion of a modified amino ...
ORGANISM(S): Escherichia coli 
2022-11-11 | PXD026425 | Pride
Synthetic biology Proteomics Phosphoproteome Phosphoprotein interactions Checkpoint kinase 2 14-3-3 Kinase Orthogonal translation system Genetic code expansion phosphothreonine 
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