Tagged - OmicsDI

Show results for

Unknown (9693)
Genomics (4704)
Transcriptomics (3725)
Proteomics (2687)
Multiomics (183)
Other (133)
Metabolomics (58)
Models (18)
Methylation profiling (7)
Genomic (4)
Clinical (1)

Organisms

Homo sapiens (1645)
Mus musculus (1343)
Caenorhabditis elegans (524)
Saccharomyces cerevisiae (287)
Drosophila melanogaster (268)
Arabidopsis thaliana (245)
Rattus norvegicus (127)
Danio rerio (47)
Schizosaccharomyces pombe (45)
Escherichia coli (36)
synthetic construct (31)
Candida albicans (29)
Sus scrofa (27)
Triticum aestivum (27)
Escherichia coli str. K-12 substr. MG1655 (21)
Zea mays (16)
Oryza sativa (16)
Bacillus subtilis (14)
Gallus gallus (14)
Bos taurus (14)
Xenopus laevis (13)
Macaca mulatta (12)
Escherichia coli K-12 (12)
Ciona intestinalis (11)
Oncorhynchus nerka (11)
Bacillus subtilis subsp. subtilis str. 168 (11)
Streptococcus pyogenes (10)
Staphylococcus aureus (9)
Trypanosoma brucei (9)
Gossypium hirsutum (8)

Organisms

Homo sapiens (950)
Mus musculus (720)
Saccharomyces cerevisiae (212)
Drosophila melanogaster (145)
Arabidopsis thaliana (100)
Caenorhabditis elegans (85)
synthetic construct (37)
Schizosaccharomyces pombe (34)
Escherichia coli (28)
Danio rerio (23)
Rattus norvegicus (21)
Candida albicans (19)
Plasmodium falciparum (15)
Toxoplasma gondii (14)
Pseudomonas aeruginosa (13)
Ciona intestinalis (12)
Trypanosoma brucei brucei (10)
Escherichia coli str. K-12 substr. MG1655 (10)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (7)
Oryza sativa (7)
Lachancea kluyveri (6)
Halobacterium salinarum NRC-1 (6)
Nakaseomyces glabratus (6)
soil metagenome (6)
Tetrahymena thermophila (5)
Escherichia coli K-12 (5)
Neurospora crassa (5)
Plasmodium berghei ANKA (5)
Xenopus laevis (5)
Aspergillus fumigatus (5)

Repository

biostudies-arrayexpress (3837)
ENA (3311)
pride (2133)
geo (1385)
MassIVE (304)
LINCS (182)
iProX (98)
jPOST (94)
MetaboLights (48)
PeptideAtlas (45)
EGA (36)
FAIRDOMHub (11)
GNPS (8)
BioModels (7)
NODE (5)
PanoramaPublic (5)
PAXDB (5)
dbGaP (4)
GPMDB (3)
ExpressionAtlas (1)

Tissue

Cell culture (637)
Epithelial cell (179)
Permanent cell line cell (140)
Brain (72)
Plant cell (59)
Embryonic stem cell (50)
Kidney (43)
Early embryonic cell (42)
HeLa cell (37)
Fibroblast (35)
Cell suspension culture (34)
Leaf (34)
T cell (34)
Embryo (33)
Whole body (28)
Blood (24)
Liver (23)
B cell (20)
Blood cell (19)
Macrophage (19)
HEK-293T cell (18)
Seedling (17)
Hepatocyte (15)
Primary cell (15)
Root (15)
Cell line (3)
Colorectum (1)
Fetal liver (1)
Splenic B cells (1)
Yolk sac (1)

Disease

Disease free (58)
Breast cancer (35)
Acute leukemia (25)
Cervix carcinoma (22)
Colon cancer (19)
Normal (7)
Lung cancer (5)
Not Available (3)
Apparently healthy (2)
Cancer (2)
Retinoblastoma (1)
XCGD (1)
HPV positive (1)
Wounded; tumour (1)
Alopecia (1)
Inflammatory bowel disease (1)
Rett syndrome (1)
Embryonic lethal at day 8.5 to 9.5 (1)
Imatinib-resistant CML cell line subclone (1)
Xenografts with H1299 cell line (1)
Sham surgery (1)
Osteosarcoma (1)
Uterine Fibroid (1)
Reference (1)
Osteosarcoma (1)
None (1)
Multiple myeloma (1)
Control (1)
Colorectal Neoplasms (1)
Colorectal cancer (1)

Technology Type

Mass Spectrometry (2133)
Affinity purification coupled with mass spectrometry proteomics (913)
Shotgun proteomics (738)
Bottom-up proteomics (365)
Data-dependent acquisition (251)
Gel-based experiment (196)
KINOMEscan (182)
Fluorescence intensity (179)
Chemical cross-linking coupled with mass spectrometry proteomics (69)
Data-independent acquisition (68)
Top-down proteomics (45)
Mass spectrometry (35)
SRM/MRM (33)
SWATH MS (29)
Affinity proteomics (25)
HDMSE (11)
Mass spectrometry assay (9)
All-ion fragmentation (4)
QPCR (3)
NMR spectroscopy (3)
Illumina Genome Analyzer II (2)
DiaPASEF (2)
Glycoproteomics (2)
Illumina HiSeq 2500, ILLUMINA, Illumina MiSeq, HiSeq X Ten (1)
COMPLETE_GENOMICS, Complete Genomics (1)
Complete Genomics, COMPLETE_GENOMICS (1)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy assay (1)

Instrument Platform

Illumina NovaSeq 6000 (90)
NextSeq 500 (71)
Illumina HiSeq 2000 (58)
Illumina HiSeq 2500 (50)
Illumina HiSeq 4000 (30)
Illumina NovaSeq X (23)
Illumina MiSeq (19)
NextSeq 550 (18)
Element AVITI (8)
NextSeq 2000 (8)
Illumina HiSeq 1500 (8)
Illumina Genome Analyzer IIx (6)
Illumina Genome Analyzer II (6)
PromethION (5)
Illumina HiSeq 3000 (5)
AB SOLiD 4 System (4)
G2565BA DNA microarray scanner [Agilent] (4)
Illumina HiSeq 1000 (4)
Chromium Controller (3)
GenePix 4000B [Axon Instruments] (3)
Affymetrix Fluidics Station 400 (3)
Affymetrix (3)
NA (3)
Illumina HiSeq X (3)
Bioanalyzer 2200 (2)
ArrayWoRx Biochip Reader [Applied Precision] (2)
GenePix 4000A [Axon Instruments] (2)
418 [Affymetrix] (2)
Scanning hardware (2)
Cellranger (1)

Publication Date

2013 (691)
2015 (614)
2010 (530)
2023 (493)
2011 (486)
2012 (480)
2025 (471)
2014 (460)
2022 (456)
2026 (454)
2024 (447)
2016 (415)
2021 (383)
2020 (320)
2017 (301)
2019 (279)
2018 (217)
2008 (215)
2009 (183)
2007 (84)
2006 (56)
2005 (39)
2004 (16)
2003 (8)
2002 (1)

UNIPROT ID/AC

Q00987 (6)
P04637 (6)
2A5D_YEAST (4)
2ABA_YEAST (4)
4932.YBR084C-A (4)
4932.YDL184C (4)
4932.YEL054C (4)
4932.YER102W (4)
4932.YIL069C (4)
4932.YJR145C (4)
4932.YKR059W (4)
4932.YKR094C (4)
4932.YML026C (4)
4932.YMR143W (4)
4932.YNL030W (4)
4932.YNL162W (4)
4932.YOR133W (4)
4932.YOR182C (4)
4932.YPL090C (4)
4932.YPL220W (4)
4932.YPR080W (4)
4932.YPR132W (4)
6PGD1_YEAST (4)
AAKG_YEAST (4)
AAP1_YEAST (4)
AATM_YEAST (4)
AB140_YEAST (4)
ABF1_YEAST (4)
ABF2_YEAST (4)
ABP1_YEAST (4)

CHEBI ID

CHEBI:27266 (12)
CHEBI:16449 (12)
CHEBI:26271 (11)
CHEBI:26986 (11)
CHEBI:16811 (11)
CHEBI:28300 (11)
CHEBI:25017 (11)
CHEBI:28044 (11)
CHEBI:15428 (11)
CHEBI:18186 (10)
CHEBI:24898 (10)
CHEBI:22660 (9)
CHEBI:25094 (9)
CHEBI:18237 (9)
CHEBI:15741 (9)
CHEBI:22653 (9)
CHEBI:17822 (8)
CHEBI:27570 (8)
CHEBI:29016 (8)
CHEBI:15891 (8)
CHEBI:18012 (8)
CHEBI:16335 (8)
CHEBI:27897 (8)
CHEBI:17234 (7)
CHEBI:16708 (7)
CHEBI:16027 (7)
CHEBI:30769 (7)
CHEBI:16704 (6)
CHEBI:18257 (6)
CHEBI:6650 (6)

Metabolite Name

Glycine (11)
Methionine (9)
Alanine (9)
Phenylalanine (9)
Glutamine (9)
Adenine (9)
Valine (8)
Taurine (8)
Arginine (8)
Adenosine (8)
Choline (7)
Guanine (7)
Cytosine (7)
Threonine (7)
Isoleucine (7)
Uridine (7)
Tryptophan (7)
Histidine (6)
Glutamate (6)
Leucine (6)
Uracil (6)
Lysine (6)
Malic acid (6)
Asparagine (6)
Tyrosine (6)
Serine (6)
Riboflavin (6)
Proline (6)
Cytidine (6)
Creatine (6)

First Public Date

2014 (391)
2025 (358)
2024 (352)
2023 (304)
2021 (238)
2026 (232)
2020 (232)
2022 (228)
2019 (220)
2018 (170)
2017 (169)
2013 (158)
2016 (129)
2015 (124)
2011 (3)
2012 (2)
2010 (1)

Modelling Approach

Ordinary differential equation model (6)
Partial differential equation model (1)

Study status

Completed (1)

Lab affiliation

EDyP (16)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (9)
University of Washington (9)
Paris-Saclay Institute of Neuroscience, Team Melki, CNRS, Gif-sur-Yvette, France (8)
Head of the Curie Institute Mass Spectrometry Platform (7)
Imperial College London (7)
UMR 7367 CNRS-UL IMoPA Biopôle de l'Université de Lorraine Campus Brabois-Santé 9 avenue de la forêt de Haye 54505 Vandoeuvre-les-Nancy FRANCE (7)
University of Bristol (7)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (6)
Cornell University (6)
Institute of Medical Microbiology, University of Zurich (6)
Institute of Molecular Systems Biology, ETH Zurich, 8093 Zurich, Switzerland Faculty of Science, University of Zurich, Zurich, Switzerland (6)
College of Chemistry and Molecular Engineering, Peking University, Beijing, China. (5)
Department of Biochemistry and Molecular Biology, University of Georgia, Athens (GA), USA. (5)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (5)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (5)
Research Unit for Molecular Medicine, Department of clinical Medicine, Aarhus University, Aarhus, Denmark (5)
State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan,Hubei 430062, China (5)
State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences • Beijing, Beijing Institute of Lifeomics, Beijing, China (5)
USDA-ARS (5)
Utrecht University (5)
Biochemistry Center Heidelberg, University of Heidelberg, Germany (4)
Center for Biologics Evaluation and Research (CBER), U.S. Food and Drug Administration (FDA) (4)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (4)
Department of Biochemistry, University of Oxford (4)
Immunology Research Center, National Health Research Institutes, Zhunan, Taiwan Department of Pathology & Immunology, Baylor College of Medicine, Houston, Texas (4)
Institute of Molecular Biology (IMB), Mainz, Germany (4)
Institute of Pharmacology and Structural Biology, CNRS, Toulouse, France (4)
Molecular Genetics, RPTU Kaiserslautern (4)
Proteomics & Metabolomics Facility, University of Connecticut (4)

Keyword

Antibodies (1)
Antibodies, Monoclonal (1)
Capecitabine (1)

IsPrivate

False (7)

Classification

bacteria (122)
protozoa (64)
fungi (50)
viruses (12)

Modification

4-tetrahydrothiazine-3-carboxylic acid (8)
15.994915 (4)
4x(15)N labeled L-arginine (4)
-17.026549 (3)
42.010565 (3)
57.021464 (3)
79.966331 (3)
2x(15)N labeled L-lysine (2)
N6 (2)
-18.010565 (1)
3-dipalmitoyl-glycerol)cysteine (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
47.984744 (1)
6.020129 (1)
788.725776 (1)
N6-dimethyl-L-lysine (1)
Not available (1)

Study type

Transcription profiling by array (1930)
ChIP-seq (619)
RNA-seq of coding RNA (418)
Other (128)
ChIP-chip by tiling array (126)
Unknown experiment type (94)
ChIP-chip by array (69)
RNA-seq of non coding RNA (63)
RNA-seq of coding RNA from single cells (60)
Comparative genomic hybridization by array (48)
Transcription profiling by tiling array (42)
Methylation profiling by high throughput sequencing (33)
Methylation profiling by array (24)
DNA-seq (19)
RIP-seq (15)
RNA-seq of total RNA (15)
Cell line - High-throughput sequencing (12)
Single nucleus RNA sequencing (10)
Transcription profiling by SAGE (8)
High-throughput sequencing (8)
CLIP-seq (8)
ATAC-seq (8)
Animal - High-throughput sequencing (7)
Transcription profiling by RT-PCR (7)
MicroRNA profiling by array (6)
Proteomic profiling by array (6)
RNAi profiling by array (5)
Genotyping by array (5)
MNase-seq (3)
CLIP-Seq (3)

Release Date

2013 (916)
2015 (899)
2014 (881)
2010 (834)
2012 (782)
2011 (765)
2021 (750)
2022 (739)
2016 (717)
2020 (696)
2023 (624)
2018 (593)
2025 (587)
2019 (580)
2017 (561)
2024 (547)
2009 (413)
2008 (413)
2007 (254)
2006 (191)
2005 (147)
2026 (137)
2004 (84)
2001 (79)
2003 (77)
2002 (69)
2000 (69)
1999 (59)
1998 (46)
1997 (17)

Location

Australia (1)

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ChIP-seq of N-terminal FLAG tagged WhiA

PRJEB103860 | ENA

ChIP-seq of C-terminal FLAG-tagged WhiA

PRJEB104001 | ENA

FLAG-tagged FOXM1A Plasmid

PRJEB24606 | ENA

HA-tagged FOXM1 isoforms

PRJEB24594 | ENA

HA-tagged ROCK2 plasmid

PRJEB24608 | ENA

Isolation of intact and active FoF1 ATP synthase using a FLAG-tagged subunit from the cyanobacterium Synechocystis sp. PCC 6803

The FoF1 ATP synthase (ATPase) is one of the most important protein complexes in the energy metabolism, with many open questions about its assembly, regulation, and functions. The isolation of functional ATPase complexes is fundamental for their subsequent biochemical and structural analysis. This p...

ORGANISM(S): Synechocystis Sp. Pcc 6803 (ncbitaxon:1148)

2022-06-03 | MSV000089593 | MassIVE

TU-tagging: cell type specific RNA isolation from intact complex tissues

We show that the combination of spatially restricted uracil phosphoribosyltransferase (UPRT) expression with 4-thiouracil (4TU) delivery can be used to label and purify cell type specific RNA from intact complex tissues. This method is useful for isolating RNA from cell types that are difficult to i...

ORGANISM(S): Drosophila melanogaster

2010-06-19 | E-GEOD-15445 | biostudies-arrayexpress

ChIP-Seq analysis of Myc-tagged budding yeast Rif1

PRJEB67557 | ENA

ChIP-Seq analysis of V5-tagged budding yeast Rif1

PRJEB67558 | ENA

FLAG-tagged PITX2 CUT&Tag

PRJNA1333295 | ENA