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GenomicsChIP-seq of E2f, Max, Myb and Myc in Drosophila melanogaster S2 cells for mapping their genome-wide binding sites
ChIP-seq for the strongest cell cycle regulator transcription factors in Drosophila Melanogaster S2 cells. These assays have been used to validate the direct transcriptional targets of the same transcription factors investigated in RNA-seq (E-MTAB-1364) and Affymetrix microarray experiments (E-MTAB-...
ORGANISM(S): Drosophila melanogaster 
2013-08-01 | E-MTAB-1648 | biostudies-arrayexpress
TranscriptomicsWidespread regulation of translation by elongation pausing in heat shock
RNA-seq and ribosome footprinting libraries of mouse 3T3 and human 293T cellsrelated to Shalgi et al. 2013 36bases paired-end RNA-seq, and ribosome footprinting libraries for: 3T3 cells - Control, 8 hours of mild heat shock (42) and 2 hours of severe heat shock (44) - in replicates, as well as 3T3 ...
ORGANISM(S): Mus musculus 
2013-01-03 | E-GEOD-32060 | biostudies-arrayexpress
ProteomicsPoirson_TPD_timsTOFPro2_VS13_14
This dataset consists of 18 raw DDA MS files and associated peak lists and results files, acquired on timsTOF Pro2 mass spectrometer operated in Data Dependent Acquisition-PASEF (Parallel accumulation-serial fragmentation) mode. It also consists of 18 raw DIA MS files acquired in Data Independent-PA...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2023-10-26 | MSV000093202 | MassIVE
ProteomicsTaipale_HSP90_cochaperone_P77_VS1
This submission is part of the mass spectrometry datasets for the manuscript by Taipale et al. (HSP90 cochaperone interaction network). This submission contains files for the first batch (2011) of the files included in the manuscript, all acquired on a 5600 TripleTOF mass spectrometer. See the RE...
2013-08-02 | MSV000078466 | MassIVE
ProteomicsTaipale_HSP90_cochaperone_P77_VS3
This submission is part of the mass spectrometry datasets for the manuscript by Taipale et al. (HSP90 cochaperone interaction network). This submission contains files for the second batch (2012) of the files included in the manuscript, all acquired on a 5600 TripleTOF mass spectrometer. See the RE...
2013-08-02 | MSV000078465 | MassIVE
ProteomicsTaipale_HSP90_cochaperone_P77_VS6
This submission is part of the mass spectrometry datasets for the manuscript by Taipale et al. (HSP90 cochaperone interaction network); Cell, 2014. This submission contains files for the data presented as a supplementary figure that details the interaction profiles for Kelch family proteins, all ac...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2014-04-02 | MSV000078575 | MassIVE
ProteomicsTaipale_HSP90_cochaperone_P77_VS5
This submission is part of the mass spectrometry datasets for the manuscript by Taipale et al. (HSP90 cochaperone interaction network); Cell, 2014. This submission contains files for the data presented as a supplementary figure that details differences in interaction profiles obtained by tagging pr...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2014-04-02 | MSV000078574 | MassIVE
GenomicsOncogenic Herpesvirus utilizes stress-induced cell cycle checkpoints for efficient lytic replication.
ChIP-sequencing reads from Oncogenic Herpesvirus utilizes stress-induced cell cycle checkpoints for efficient lytic replication, accepted to PLOS Pathogens
ORGANISM(S): Homo sapiens 
2016-06-01 | E-MTAB-4356 | biostudies-arrayexpress
TranscriptomicsGenomic variation and adaptation in fragmented landscapes
We have compared allelic and gene expression variation using individual-based RNA-seq data from four regional populations of the Glanville fritillary butterfly (Melitaea cinxia) in northern Europe. Two of the populations represent fragmented habitat and two continuous habitat. Based on sequence info...
ORGANISM(S): Melitaea cinxia 
2014-07-04 | E-GEOD-47692 | biostudies-arrayexpress
TranscriptomicsSingle-cell RNA-seq of human cancer cell lines and their resistant variants treated with cytostatic kinase inhibitors
Intent of the experiment was to identify common factors associated with proliferation in multiple cancer cell lines from different tissue of origin. Cell lines and their resistant variants were treated with 0, 0.8, 4, 20, 100, 500 nM drug concentration at 2, 6, 12, and 24 hour time points. Experimen...
ORGANISM(S): Homo sapiens 
2023-11-08 | E-MTAB-13427 | biostudies-arrayexpress
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