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TranscriptomicsChIP-chip analysis for H-NS binding sites in wild type and hhaydgT cells
Analysis of the distribution of the binding regions of the H-NS protein in E. coli W3110 and W3110hhaydgT mutant cells.
ORGANISM(S): Escherichia coli 
2013-04-04 | E-MEXP-3812 | biostudies-arrayexpress
ModelsTakahashi2015 - Zinc regulation E.coli
This a model from the article: The dynamic balance of import and export of zinc in Escherichia coli suggests a heterogeneous population response to stress Takahashi H, Oshima T, Doherty N, Clayton SR, Iqbal M, Hill PJ, Hobman JL, Tobe T, Ogasawara N, Kanaya S and St...
2016-02-10 | MODEL1502180000 | BioModels
TranscriptomicsChAP-chip analysis of Hha binding regions in wild type and hnsstpA E. coli cells
The analysis of the distribution of Hha binding regions (His-Hha were expressed from pQE plasmid) on E. coli chromosome in E. coli W3110 (wild type) and hns/stpA mutant cells.
ORGANISM(S): Escherichia coli 
2013-04-02 | E-MEXP-3813 | biostudies-arrayexpress
TranscriptomicsIdentification of human minor H antigens based on genotyping of pooled DNA
Minor histocompatibility (H) antigens are the molecular targets of allo-immunity responsible both for the development of anti-tumor effects and for graft-versus-host disease (GVHD) in allogeneic hematopoietic stem cell transplantation (allo-HSCT). However, despite their potential clinical use, our ...
ORGANISM(S): Homo sapiens 
2007-12-31 | E-GEOD-10044 | biostudies-arrayexpress
TranscriptomicsReference Design time-course
E.coli K-12 W3110 was grown in LB medium and harvested at each time point. And time series microarray experiments were performed based on reference desgin. In reference design, the control sample is collected at one representative time point. Combining with data from sequential design, more acculate...
ORGANISM(S): Escherichia coli 
2011-03-31 | E-GEOD-6033 | biostudies-arrayexpress
TranscriptomicsDe novo Assembly and Characterization of Swertia japonica Transcriptome for the Identification of Candidate Genes Involved in the Biosynthesis of Therapeutic Metabolites
Here, we performed deep transcriptome sequencing for the aerial-tissues and the roots of S. japonica, generating over 2 billion raw reads with an average length of 101 nt by using an Illumina paired-end sequencing by HiSeq2000 platform. Using a combined approach of three popular assemblers, de novo ...
ORGANISM(S): Swertia japonica 
2016-07-01 | E-GEOD-80057 | biostudies-arrayexpress
TranscriptomicsDeoxynivalenol affects the gene expression of A549 lung epithelial cells
Deoxynivalenol (DON) is an important Fusarium toxin of concern for food safety. The inhalation of powder contaminated with deoxynivalenol is possible and may cause lung toxicity. In this study, we investigated the gene expression profile of A549 cells treated with 0.2 microg/mL deoxynivalenol by mic...
ORGANISM(S): Homo sapiens 
2016-02-29 | E-GEOD-60928 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mouse wild-type, TBK1, IKKi(Ikbke), or TBK1 IKKi doubly deficient embryonic fibroblats to elucidate how TBK1 and/or IKKi mediates B-DNA-mediated innate immune responses
B-DNA-induced gene expression profile in wild-type, TBK1, IKKi(Ikbke), or TBK1 IKKi doubly deficient embryonic fibroblats; to elucidate how TBK1 and/or IKKi mediates B-DNA-mediated innate immune responses. Experiment Overall Design: Total RNA was extracted from embryonic fibroblats transfected for 4...
ORGANISM(S): Mus musculus 
2007-12-07 | E-GEOD-4171 | biostudies-arrayexpress
UnknownCryo-EM SPA dataset of arginine oxidase from Pseudomonas sp. TRU 7192
Not available
EMPIAR-13426 | biostudies-other
UnknownPlanetary-scale streak structure reproduced in high-resolution simulations of the Venus atmosphere with a low-stability layer.
Not available
S-EPMC6327047 | biostudies-literature
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