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TranscriptomicsMicroarray analysis of cortical cells of maize primary root grown under aereobic conditions with or without ethylene treatment
Aerenchyma is continuous gas space between shoot and roots that contributes to the internal aeration in plants. In response to excess water stress and the plant hormone ethylene, maize (Zea mays) forms aerenchyma in root cortical cells by programmed cell death (PCD). The aim of this study was to und...
ORGANISM(S): Zea mays 
2015-04-01 | E-GEOD-60944 | biostudies-arrayexpress
TranscriptomicsSpatial transcriptomes of iron-deficient and cadmium-stressed rice
Several metals are essential nutrients for plants but metals are toxic in excess, deleteriously affecting crop yield and quality. Various kinds of genes involved in metal homeostasis have been investigated in detail over the past few decades and the mechanisms of how metals are absorbed from soil an...
ORGANISM(S): Oryza sativa 
2013-12-31 | E-GEOD-40549 | biostudies-arrayexpress
ProteomicsTMT-10plex analysis of endogenous proteins expressed in HEK-293 cells as a recombinant transporter assay system
Tandem-mass-tags (TMT)-10plex proteomics characterized endogenous proteins expressed in HEK-293 cells transiently transfected with control vector or transporter cDNA. Proteomic profiles between mock (n=3), naïve (n=3), and HEK-293 cells transfected with MATE1 cDNA (1, 10, 30, 100 ng) were compared.
ORGANISM(S): Homo Sapiens (human) 
2022-07-07 | PXD030022 | JPOST Repository
TranscriptomicsMicroarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa).
Internal aeration is crucial for root growth in waterlogged soil. A barrier to radial oxygen loss (ROL) can enhance long- distance oxygen transport via the aerenchyma to the root tip; a higher oxygen concentration at the apex enables root growth into anoxic soil. The ROL barrier is formed within the...
ORGANISM(S): Oryza sativa 
2014-06-26 | E-GEOD-58804 | biostudies-arrayexpress
TranscriptomicsTranscriptome profiles of the rice coleoptile of wild type and reduced adh activity (rad) mutant
Normally, rice can elongate the coleoptile under submerged condition. However, reduced adh activity (rad) mutant cannot elongate the coleoptile under submergence. To investigate the change in gene expression, we performed microarray analysis. In this analysis, we used 1 day old seedling of rice. B...
ORGANISM(S): Oryza sativa Japonica Group 
2011-04-07 | E-GEOD-26632 | biostudies-arrayexpress
TranscriptomicsIdentification of genes expressed in maize root cortical cells during lysigenous aerenchyma formation using laser microdissection and a microarray
Aerenchyma is a specialized tissue consisting of longitudinal gas spaces, which enables internal movement of gases (e.g., O2, CO2, ethylene and methane), in plant roots, petioles and stems. Especially, internal transport of oxygen via aerenchyma from shoots to roots is very important for adaptation ...
ORGANISM(S): Zea mays 
2010-07-31 | E-GEOD-22943 | biostudies-arrayexpress
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