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TranscriptomicsReference Design time-course
E.coli K-12 W3110 was grown in LB medium and harvested at each time point. And time series microarray experiments were performed based on reference desgin. In reference design, the control sample is collected at one representative time point. Combining with data from sequential design, more acculate...
ORGANISM(S): Escherichia coli 
2011-03-31 | E-GEOD-6033 | biostudies-arrayexpress
TranscriptomicsLoss-of-parkin function enhances cyclin D1 expression and AKT signalling and promotes glioblastoma cell proliferation
Mutations in the parkin gene, which encodes a ubiquitin ligase, are a major cause of autosomal recessive parkinsonism. Interestingly, parkin also plays a role in cancer as a putative tumor suppressor. Consistent with this, the gene is frequently targeted by deletion and inactivation in human maligna...
ORGANISM(S): Homo sapiens 
2012-03-15 | E-GEOD-29494 | biostudies-arrayexpress
TranscriptomicsComprehensive expression analysis of primary hepatocytes under four different culture conditions
Primary hepatocytes have been widely explored as cell sources for the study of in vitro drug metabolism and pharmacokinetics (DMPK). Aiming toward establishing an in vitro drug screening method, the current study illustrated a comprehensive increase in the DMPK-related gene expression of nanopillar ...
ORGANISM(S): Rattus norvegicus 
2015-06-25 | E-GEOD-38950 | biostudies-arrayexpress
UnknownIdentification of Two Critical Neutralizing Epitopes in the Receptor Binding Domain of Hepatitis B Virus preS1.
Not available
S-EPMC8092832 | biostudies-literature
TranscriptomicsGene expression profiles of the aerenchy maformation in maize using laser microdissection
To adapt to waterlogging in soil, some gramineous plants, such as maize (Zea mays), form lysigenous aerenchyma in the root cortex. Ethylene, which is accumulated during waterlogging, promotes aerenchyma formation. Aerencyma is formedonly in cortex in maise root. Therevore, aerenchyma is one of the ...
ORGANISM(S): Zea mays 
2011-01-28 | E-GEOD-26897 | biostudies-arrayexpress
Proteomicsfetal growth restriction_pancreas_differences in nutritional condition
Quantification of proteins in the pancreas of fetal growth restriction.
ORGANISM(S): Rattus Rattus (black Rat) 
2022-06-07 | PXD026502 | JPOST Repository
ProteomicsProteomic analysis of Cdkal1-KO mouse podocyte cell line
E11 murine kidney podocyte cell line was purchased from Cell Lines Service. Cells were cultured in RPMI medium (Wako) supplemented with 10% fetal bovine serum (Sigma) at 33°C and induced to differentiate by culture at 37°C for two weeks and 5% CO2. Cdkal1 knockout in the E11 cell line was performed...
ORGANISM(S): Mus Musculus (mouse) 
2025-11-11 | PXD057714 | JPOST Repository
ProteomicsLFQ of GFP-Trap IP-MS from MEF cells expressing GFP-WIPI2d
Control or GFP-WIPI2d expressing MEFs were treated with or without 0.5uM Apilimod for one hour, and then cross-linked with 0.1% formaldehyde for ten mins at room temperature. After cross-linking was quenched with 100mM glycine for four mins at room temperature, cells were washed with HEPES saline co...
ORGANISM(S): Mus Musculus (mouse) 
2024-06-25 | PXD043701 | JPOST Repository
ProteomicsLFQ of GFP-Trap IP-MS from MEF cells expressing GFP-Rubicon
Control or GFP-Rubicon expressing MEFs were treated with or without 0.5uM Apilimod for one hour, and then cross-linked with 0.1% formaldehyde for ten mins at room temperature. After cross-linking was quenched with 100mM glycine for four mins at room temperature, cells were washed with HEPES saline c...
ORGANISM(S): Mus Musculus (mouse) 
2024-06-25 | PXD043695 | JPOST Repository
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