Tanaka A A - OmicsDI

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Unknown (11151)
Transcriptomics (282)
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Organisms

Homo sapiens (159)
Mus musculus (115)
Arabidopsis thaliana (33)
Dictyostelium discoideum (10)
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Organisms

Mus musculus (11)
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Homarus americanus (1)
unidentified (1)
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Repository

biostudies-arrayexpress (293)
pride (73)
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geo (9)
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Tissue

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Colon cancer (5)
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Technology Type

Mass Spectrometry (73)
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Mass spectrometry (20)
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Data-dependent acquisition (3)
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HDMSE (3)
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SWATH MS (2)
Illumina HiSeq 2000, Infinium HumanMethylation450 BeadChip (1)
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MSE (1)

Instrument Platform

Capillary electrophoresis MS - negative (3)
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Liquid Chromatography MS - positive - reverse phase (3)
Other (2)
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LTQ XL (Thermo Scientific) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative (1)

Publication Date

2014 (50)
2013 (50)
2015 (38)
2012 (37)
2010 (36)
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2011 (25)
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2020 (15)
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2019 (9)
2018 (8)
2007 (8)
2006 (2)
2005 (1)

UNIPROT ID/AC

A1L159 (1)
A3EXL0 (1)
O00198 (1)
O00206 (1)
O00213 (1)
O00233 (1)
O00755 (1)
O14672 (1)
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O75581 (1)
O76074 (1)
O94817 (1)

CHEBI ID

CHEBI:17822 (10)
CHEBI:25094 (10)
CHEBI:28044 (10)
CHEBI:30769 (10)
CHEBI:15741 (9)
CHEBI:16335 (9)
CHEBI:16811 (9)
CHEBI:18012 (8)
CHEBI:18237 (8)
CHEBI:22653 (8)
CHEBI:22660 (8)
CHEBI:24898 (8)
CHEBI:27897 (8)
CHEBI:28300 (8)
CHEBI:6650 (8)
CHEBI:15428 (7)
CHEBI:16010 (7)
CHEBI:16027 (7)
CHEBI:17148 (7)
CHEBI:17154 (7)
CHEBI:17596 (7)
CHEBI:18186 (7)
CHEBI:18257 (7)
CHEBI:25017 (7)
CHEBI:26271 (7)
CHEBI:26984 (7)
CHEBI:26986 (7)
CHEBI:27266 (7)
CHEBI:27570 (7)
CHEBI:7916 (7)

Metabolite Name

Citrate (5)
ADP (4)
AMP (4)
ATP (4)
Inosine (4)
Malate (4)
Succinate (4)
2-Oxoglutarate (3)
Adenosine (3)
CDP (3)
CTP (3)
GDP (3)
GMP (3)
GTP (3)
Guanosine (3)
IMP (3)
Isocitrate (3)
Lysine (3)
N-Acetylglutamate (3)
NAD+ (3)
NADH (3)
NADP+ (3)
NADPH (3)
Nicotinate (3)
Ornithine (3)
PRPP (3)
UDP (3)
UDP-glucose (3)
UMP (3)
UTP (3)

First Public Date

2024 (8)
2023 (8)
2025 (7)
2015 (4)
2014 (4)
2019 (3)
2026 (2)
2016 (2)
2020 (1)
2017 (1)
2013 (1)

Lab affiliation

Beth Israel Deaconess Medical Center (2)
Departamento de Bioquimica, Escola Paulista de Medicina, UniversidadeFederal de Sao Paulo, SP, Brazil (2)
Memorial Sloan Kettering Cancer Center (2)
WWU Muenster, Institute of Plant Biology and Biotechnology (2)
1Department of Neuropathology, Medical Research Institute, Tokyo Medical and Dental University (1)
Australian Institute for Bioengineering and Nanotechnology (AIBN), The University of Queensland (1)
Beth Israel Deaconess Medical Center / Harvard Medical School (1)
Biochemistry and Metabolism Department John Innes Centre Norwich Research Park Norwich, UK (1)
Biochemistry and Metabolism Department John Innes Centre Norwich UK (1)
Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (1)
Brigham Women's Hospital, Harvard medical school (1)
Brigham and Women's Hospital (1)
Cambridge Institute for Medical Research, Hills Road, Cambridge, CB2 0XY (1)
Cambridge Institute for Medical Research, University of Cambridge (1)
Center for Biomedical Mass Spectrometry, Department of Biochemistry, Boston University School of Medicine, Boston, Massachusetts, USA (1)
Center for Interdisciplinary Cardiovascular Sciences, Division of Cardiovascular Medicine, Department of Medicine, Brigham Women's Hospital, Harvard Medical School, Boston, MA, United States (1)
Center for Medical Research & Development, Division of Translational Research, Osaka Medical and Pharmaceutical University, 2-7 Daigaku-machi,Takatsuki, Osaka 569-8686, Japan (1)
Centre de recherche hopital Maisonneuve Rosemont (1)
Centre for Proteome Research, Biosciences Building, Institute of Integrative Biology, University of Liverpool, Liverpool, L69 7ZB (1)
Chair of the LU Hemp Institute and an Assistant Professor of Molecular Biology and Genomics at Lincoln University in Missouri. (1)
Departamento de Bioquímica, Escola Paulista de Medicina, Universidade Federal de São Paulo, São Paulo, 04023-901, Brazil; Laboratório Especial de Toxinologia Aplicada, Center of Toxins, Immune-Response and Cell Signaling, Instituto Butantan, São Paulo, 05503-900, Brazil (1)
Department of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, Chiba, Japan. (1)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark (1)
Department of Biochemistry, Federal University of São Paulo, Brazil (1)
Department of Biochemistry, Laboratory of Peptidomics and Proteomics, Federal University of São Paulo, Brazil (1)
Department of Biochemistry, Laboratory of Peptidomics and Proteomics,Federal University of São Paulo, Brazil. (1)
Department of Neuropathology, Medical Research institute and Center for Brain Integration Research, Tokyo Medical and Dental University, Japan (1)
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 50463, Republic of Korea (1)
Department of biochemistry, Federal University of São Paulo, Brazil (1)
Department of biochemistry, UNIFESP, Brazil. (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Modification

Not available (1)

Study type

Transcription profiling by array (200)
RNA-seq of coding RNA (16)
ChIP-seq (13)
Methylation profiling by array (13)
Comparative genomic hybridization by array (10)
RNA-seq of non coding RNA (8)
ChIP-chip by tiling array (6)
Transcription profiling by tiling array (5)
Unknown experiment type (4)
Genotyping by array (3)
ChIP-chip by array (2)
Transcription profiling by RT-PCR (2)
Other (2)
MicroRNA profiling by array (2)
Methylation profiling by high throughput sequencing (2)
One-color microarray (1)
Spatial transcriptomics by high-throughput sequencing (1)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (1271)
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2025 (1139)
2021 (1099)
2024 (954)
2020 (852)
2019 (672)
2018 (637)
2017 (612)
2016 (531)
2015 (452)
2014 (403)
2013 (283)
2012 (242)
2026 (195)
2011 (187)
2010 (176)
2009 (132)
2008 (96)
2007 (76)
2005 (43)
2006 (41)
2004 (38)
2003 (34)
2002 (32)
2000 (28)
2001 (23)
1999 (19)
1998 (10)
1997 (6)

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Two apples a day modulate human:microbiome co-metabolic processing of polyphenols, tyrosine and tryptophan

PURPOSE: Validated biomarkers of food intake (BFIs) have recently been suggested as a useful tool to assess adherence to dietary guidelines or compliance in human dietary interventions. Although many new candidate biomarkers have emerged in the last decades for different foods fr...

2020-04-28 | MTBLS469 | MetaboLights

MetaboKit: a comprehensive data extraction tool for untargeted metabolomics (Mouse liver assays)

We have developed MetaboKit, a comprehensive software package for compound identification and relative quantification in mass spectrometry-based untargeted metabolomics analysis. In data dependent acquisition (DDA) analysis, MetaboKit constructs a customized spectral library with compound identit...

2021-11-02 | MTBLS1266 | MetaboLights

MetaboKit: a comprehensive data extraction tool for untargeted metabolomics (Standard mixture assay)

2021-11-05 | MTBLS1311 | MetaboLights

The complete mitochondrial genome of a Biwa goby, Gymnogobius isaza (Tanaka, 1916).

Not available

S-EPMC11198123 | biostudies-literature

Array-Based Screening of Silver Nanoparticle Mineralization Peptides.

Not available

S-EPMC7178033 | biostudies-literature

Genetic divergence and phylogeographic history of two closely related species (Leucomeris decora and Nouelia insignis) across the 'Tanaka Line' in Southwest China.

Not available

S-EPMC4495643 | biostudies-literature

Changes in Weight, Sedentary Behaviour and Physical Activity during the School Year and Summer Vacation.

Not available

S-EPMC5981954 | biostudies-literature

Microarray-based global mapping of integration sites of retrotransposon, intracisternal A-particle, in mouse genome

Mammalian genomes have evolutionary harbored numerous mobile elements, a part of which are still active and evoke genomic instability. Their movement and positional diversity occasionally result in phenotypic changes and variation by causing altered expression and disruption of neighboring genes in...

ORGANISM(S): Mus musculus

2008-05-03 | E-GEOD-9572 | biostudies-arrayexpress

Mizuno2012 - AlzPathway: a comprehensive map of Alzheimer's disease

Mizuno2012 - AlzPathway: a comprehensive map of Alzheimer's disease Non-kinetic molecular map. Pure SBML file of AlzPathway provided by the authors as Additional file 5. This model is described in the article: AlzPathway: a comprehensive map of signaling pathways of Alzheime...

2016-05-09 | MODEL1504290001 | BioModels

The complete mitochondrial genome of pseudanthias pascalus (Jordan & Tanaka, 1927) (perciformes: serranidae).

Not available

S-EPMC11057553 | biostudies-literature

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