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MetabolomicsA Novel Approach to Characterize the Lipidome of Marine Archaeon Nitrosopumilus maritimus by Ion Mobility Mass Spectrometry

Archaea are differentiated from the other two domains of life by their biomolecular characteristics. One such characteristic is the unique structure and composition of their lipids. Characterization of the whole set of lipids in a biological system (the lipidome) remains technologically challengi...

2021-12-16 | MTBLS3714 | MetaboLights
TranscriptomicsTranscription profiling of human HMLER breast cancer cells treated with paclitaxel and salinomycin-treated HMLER breast cancer cells
Screens for agents that specifically kill epithelial cancer stem cells (CSCs) have not been possible due to the rarity of these cells within tumor cell populations and their relative instability in culture. We describe here an approach to screening for agents with epithelial CSC-specific toxicity. W...
ORGANISM(S): Homo sapiens 
2009-09-15 | E-GEOD-17215 | biostudies-arrayexpress
Proteomicshepatocellular carcinoma proteomics
A DIA proteome analysis on HCC tissue (CA) and adjacent non-tumorous tissue (NO) samples
ORGANISM(S): Homo Sapiens 
2020-10-14 | PXD021979 |
TranscriptomicsDigital gene expression profiling of the Phytophthora sojae transcriptome
This experiment contains Phytophthora sojae samples and RNA-seq data from experiment E-GEOD-29561 (https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-29651/) to understand gene expression during the P. sojae life cycle. The transcriptome of the oomycete plant pathogen Phytophthora sojae was profi...
ORGANISM(S): Phytophthora sojae 
2011-09-01 | E-MTAB-4039 | biostudies-arrayexpress
TranscriptomicsDigital gene expression profiling of the Phytophthora sojae transcriptome
The transcriptome of the oomycete plant pathogen Phytophthora sojae was profiled at 10 different developmental and infection stages based on a 3'-tag digital gene expression (DGE) protocol. More than 90 million clean sequence tags were generated and compared to the P. sojae genome and its 19,027 pre...
ORGANISM(S): Glycine max 
2011-09-01 | E-GEOD-29651 | biostudies-arrayexpress
ProteomicsSILAC experiments profiling of the proteome of WT and CobB KO E.coli
SILAC experiments profiling of the proteome of WT and CobB KO E.coli
ORGANISM(S): Escherichia Coli 
2021-12-11 | PXD030345 |
ProteomicsSILAC experiments profiling of the proteome of WT and YiaC KO E.coli
SILAC experiments profiling of the proteome of WT and YiaC KO E.coli
ORGANISM(S): Escherichia Coli 
2021-12-11 | PXD030346 |
Proteomicsyagpm3_2
enrichment for specialized purple membrane proteins, cell culture #3; Goo et al., unpublished data.
ORGANISM(S): Halobacterium Nrc-1 (halobacterium) 
2006-12-31 | PAe000187 | PeptideAtlas
Proteomicsyagpm3_1
enrichment for specialized purple membrane proteins, cell culture #3; Goo et al., unpublished data.
ORGANISM(S): Halobacterium Nrc-1 (halobacterium) 
2006-12-31 | PAe000193 | PeptideAtlas
ProteomicsProteomic analysis of human aqueous humor from Fuchs uveitis syndrome
We performed liquid chromatography-tandem mass spectrometry-based proteomic methods to evaluate the aqueous humor protein profiles of all 37 samples.
ORGANISM(S): Homo Sapiens 
2023-07-07 | PXD043597 |
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