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Unknown (147733)
Genomics (30688)
Transcriptomics (12443)
Proteomics (4816)
Metabolomics (1678)
Other (831)
Methylation profiling (419)
Clinical (235)
Genomic (130)
Multiomics (77)
Models (65)

Organisms

Homo sapiens (10741)
Mus musculus (4868)
Arabidopsis thaliana (404)
Drosophila melanogaster (396)
Caenorhabditis elegans (357)
Rattus norvegicus (286)
Saccharomyces cerevisiae (243)
Danio rerio (133)
Escherichia coli (68)
Sus scrofa (66)
Bos taurus (63)
Gallus gallus (62)
Schizosaccharomyces pombe (60)
Oryza sativa (51)
Canis lupus familiaris (42)
Zea mays (41)
Candida albicans (24)
cellular organisms (9)
Acinetobacter baumannii (3)
Drosophila (2)
Cricetulus griseus (2)
Bacteria (2)
Plasmodium knowlesi (1)
Hepatitis B virus (1)
Pichia kudriavzevii (1)
Leishmania (1)
Geobacter metallireducens (1)
Clostridioides difficile (1)
Eukaryota (1)
Mammalia (1)

Organisms

Homo sapiens (6512)
Mus musculus (3254)
Zea mays (2039)
soil metagenome (627)
marine metagenome (320)
Arabidopsis thaliana (215)
seawater metagenome (197)
human nasopharyngeal metagenome (192)
rhizosphere metagenome (191)
Drosophila melanogaster (173)
gut metagenome (158)
Rattus norvegicus (148)
human gut metagenome (143)
Saccharomyces cerevisiae (137)
mouse gut metagenome (118)
Danio rerio (90)
aquatic metagenome (87)
sediment metagenome (86)
freshwater metagenome (82)
Caenorhabditis elegans (72)
bioreactor metagenome (66)
marine sediment metagenome (65)
microbial mat metagenome (65)
coral metagenome (60)
plant metagenome (59)
feces metagenome (56)
uncultured bacterium (54)
human metagenome (54)
Sus scrofa (49)
biofilm metagenome (47)

Repository

ENA (25424)
geo (9619)
biostudies-arrayexpress (6474)
pride (3347)
EGA (1878)
MetaboLights (1292)
NODE (982)
MassIVE (545)
iProX (403)
GNPS (286)
PanoramaPublic (186)
jPOST (164)
dbGaP (130)
PeptideAtlas (119)
MetabolomicsWorkbench (80)
LINCS (68)
BioModels (56)
EVA (26)
GPMDB (22)
PAXDB (22)
Cell Collective (9)
ExpressionAtlas (7)

Tissue

Rectum (379)
Sigmoid_Colon (167)
Right colon (165)
Left_Colon (53)
Blood (15)
Spinal cord (12)
Cultured cells (8)
Muscle (7)
T-cells (6)
Lung (5)
Bacterial cells (4)
Feces (3)
Liver (3)
Plant (2)
HeLa cells (2)
Merozoites (1)
Fly (1)
Multiple tissues (1)
Mouse tissue (1)
Thyroid (1)
SI (1)
Synthetic (1)
Leukemia cells (1)
Fibroblast cells (1)
Colon (1)
Bone marrow (1)
Intestine (1)
Heart (1)
Macrophages (1)
Urine (1)

Disease

Breast cancer (85)
Melanoma (25)
Non-small cell lung carcinoma (20)
Glioblastoma (15)
Neuroblastoma (12)
Normal (11)
Cancer (7)
Colorectal adenocarcinoma (7)
Angiosarcoma (3)
Papillary thyroid carcinoma (2)
Adenoid cystic carcinoma (2)
Pheochromocytoma (2)
Leishmaniasis (1)
Neurodegenerative disease (1)
Clostridium difficile colitis (1)
Mock infection (1)
Astrocytomas (1)
XCGD (1)
Huntington's disease mouse model (1)
Cogenital heart disease (1)
GIP-dependent Cushing's syndrome (1)
HPV positive (1)
Responder to preoperative radiotherapy (1)
MAS (1)
Osteosarcoma subtype fibroblastic (1)
Endometrioid carcinoma (1)
High grade glioblastoma (1)
Ewing family tumor (1)
Metabolic syndrome (1)
Androgen-dependent prostate cancer (1)

Technology Type

Illumina HiSeq 2000 (57)
Illumina HiSeq 2500 (16)
Illumina MiSeq (13)
Illumina HiSeq 2500, ILLUMINA (10)
Illumina HiSeq 2000, ILLUMINA (8)
ILLUMINA, Illumina HiSeq 2500 (7)
ILLUMINA, Illumina HiSeq 2000 (7)
ILLUMINA, NextSeq 500 (4)
Illumina Genome Analyzer II (4)
ILLUMINA, Illumina MiSeq (3)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (3)
Illumina MiSeq, ILLUMINA (2)
Illumina MiSeq, Illumina HiSeq 2500 (2)
Illumina HiSeq 2500, Illumina MiSeq (2)
Illumina HiSeq 2000, Illumina MiSeq (2)
Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 2500 (2)
Illumina HiSeq 2500, Illumina HiSeq 2000 (2)
Illumina HiSeq 2000, Illumina HiSeq 2500 (2)
ILLUMINA, Illumina HiSeq 2000 (ILLUMINA), Illumina HiSeq 2000 (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (2)
Illumina MiSeq, NextSeq 500, ILLUMINA (1)
Illumina HiSeq 2500, ILLUMINA, Affymetrix GeneChip Scanner 3000 7g (1)
Illumina MiSeq, Illumina HiSeq 2500, ILLUMINA (1)
ION_TORRENT, Ion Torrent PGM (1)
Illumina CytoSNP, Illumina HumanOmni2.5, ILLUMINA, Illumina 450k, Illumina HiSeq 2000 (1)
ILLUMINA, Illumina HiSeq 2500, Ion Torrent PGM, ION_TORRENT (1)
Illumina HiSeq 2000, ILLUMINA, Affymetrix SNP 6.0 (1)
ILLUMINA, NextSeq 500, HiSeq X Ten (1)
ILLUMINA, NextSeq 500, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)

Instrument Platform

Illumina NovaSeq 6000 (160)
Illumina HiSeq 2500 (107)
NextSeq 500 (91)
Illumina HiSeq 2000 (83)
Illumina HiSeq 4000 (71)
Illumina MiSeq (40)
NextSeq 550 (29)
Illumina NovaSeq X (16)
Illumina Genome Analyzer II (11)
Illumina HiSeq 1500 (11)
NextSeq 2000 (10)
DNBSEQ-G400 (10)
N/A (10)
HiSeq X Ten (9)
Illumina Genome Analyzer IIx (8)
MinION (8)
Axon- GenePix4000B (5)
Compute Cluster (4)
418 [Affymetrix] (4)
Scanning hardware (4)
Ion Torrent PGM (4)
NA (4)
Illumina HiSeq 1000 (4)
Illumina HiSeq 3000 (4)
PALM Robo LCM (3)
PromethION (3)
10X Genomics Chromium (3)
Not applicable (3)
454 GS FLX+ (3)
Axon GenePix 4000B scanning hardware (3)

Publication Date

2025 (2473)
2026 (2252)
2024 (1887)
2023 (1473)
2022 (1446)
2015 (1255)
2021 (1212)
2013 (1149)
2020 (1146)
2014 (1117)
2016 (996)
2012 (944)
2010 (875)
2019 (870)
2011 (769)
2018 (736)
2017 (630)
2008 (396)
2009 (294)
2007 (208)
2006 (67)
2005 (59)
2004 (14)
2003 (5)
2027 (4)
2002 (1)

UNIPROT ID/AC

P27361 (3)
P31749 (3)
P04049 (3)
Q02750 (3)
P47811 (2)
O09110 (2)
P70236 (2)
Q9WUB0 (2)
Q91WA6 (2)
Q924T7 (2)
Q62073 (2)
Q60855 (2)
P70191 (2)
Q9WTK5 (2)
P39429 (2)
Q3U0V2 (2)
P25118 (2)
P70196 (2)
P42225 (2)
Q07889 (2)
P25799 (2)
Q9Z1E3 (2)
Q5SCB5 (1)
P30285 (1)
Q9WTU6 (1)
Q91Y86 (1)
Q8CE90 (1)
P47809 (1)
Q99K90 (1)
Q571K4 (1)

ENSEMBL ID

ENSECAG00000021580 (51)
ENSECAG00000014414 (51)
ENSECAG00000009556 (51)
ENSECAG00000004960 (51)
ENSECAP00000013223 (50)
ENSECAP00000007368 (50)
ENSECAG00000021499 (50)
ENSECAG00000019927 (50)
ENSECAG00000011847 (50)
ENSECAG00000004973 (50)
ENSECAG00000001810 (50)
ENSECAP00000003495 (49)
ENSECAG00000014858 (49)
ENSECAG00000009752 (49)
ENSECAG00000006095 (49)
ENSECAG00000000207 (48)
ENSECAG00000010481 (46)
ENSECAP00000007504 (45)
ENSECAG00000012096 (44)
ENSECAG00000000548 (44)
ENSECAG00000024571 (43)
ENSECAG00000004201 (43)
ENSECAG00000019900 (42)
ENSECAG00000016475 (42)
ENSECAG00000015581 (41)
ENSECAG00000021882 (40)
ENSECAG00000021116 (40)
ENSECAG00000014197 (40)
ENSECAG00000003345 (40)
ENSECAG00000000841 (40)

CHEBI ID

CHEBI:15891 (186)
CHEBI:15354 (159)
CHEBI:16865 (136)
CHEBI:17154 (135)
CHEBI:16870 (81)
CHEBI:17310 (62)
CHEBI:27470 (61)
CHEBI:29108 (4)
CHEBI:35222 (3)
CHEBI:15927 (3)
CHEBI:17151 (3)
CHEBI:50622 (3)
CHEBI:11851 (3)
CHEBI:15621 (3)
CHEBI:17380 (3)
CHEBI:18191 (3)
CHEBI:16424 (3)
CHEBI:17158 (3)
CHEBI:17924 (3)
CHEBI:28325 (3)
CHEBI:17588 (3)
CHEBI:50570 (3)
CHEBI:27466 (3)
CHEBI:18304 (3)
CHEBI:27668 (3)
CHEBI:29034 (3)
CHEBI:29033 (3)
CHEBI:17600 (3)
CHEBI:27809 (3)
CHEBI:65088 (3)

Metabolite Name

Adenosine (186)
Hypoxanthine (185)
Creatine (182)
Uridine (170)
Creatinine (169)
Adenine (165)
Taurine (157)
Inosine (157)
Uracil (151)
Choline (146)
L-Phenylalanine (140)
L-Tyrosine (138)
Betaine (136)
Guanosine (136)
Glycine (134)
Xanthine (131)
Ornithine (130)
Cytidine (128)
Citric acid (127)
Guanine (125)
L-Histidine (124)
L-Tryptophan (123)
L-Proline (123)
Phenylalanine (122)
Cytosine (121)
L-Valine (119)
Citrulline (113)
L-Glutamine (113)
Thymidine (113)
Succinic acid (112)

First Public Date

2025 (2889)
2026 (2669)
2024 (2378)
2018 (2184)
2019 (2117)
2022 (1924)
2023 (1873)
2014 (1817)
2021 (1699)
2020 (1450)
2013 (1373)
2017 (1132)
2015 (1037)
2016 (847)
2012 (14)
2010 (11)
2011 (10)

Modelling Approach

Ordinary differential equation model (38)
Constraint-based model (5)
Machine learning (3)
Computational model (2)
Markov model (1)
Rule-based model (1)
Mathematical model (1)
Other (1)
Agent-based model (1)
Differential equation model (1)

Study status

Completed (76)
Recruiting (63)
Not yet recruiting (32)
Not provided (28)
Active, not recruiting (14)
Withdrawn (9)
Terminated (7)
Ongoing (2)
Enrolling by invitation (2)
No longer available (1)
Suspended (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (104)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (32)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (28)
Functional Proteomics, ICR (24)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (12)
Proteomics facility, Central Science Laboratory, University of Tasmania (11)
The Institute of Cancer Research (11)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (10)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (10)
Institute of Cancer Research, London (8)
Department of Inflammation and Immunity, Gastroenterology and Hepatology. Cleveland Clinic, Cleveland Ohio, USA (8)
Moffitt Cancer Center Tampa, FL, USA (8)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (8)
Centre for Applied Pharmacokinetic Research, School of Health Sciences, The University of Manchester, UK (7)
Department of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT 06520, USA. Systems Biology Institute, Yale University, New Haven, CT 06516, USA (7)
Institute of Molecular Systems Biology, ETH Zurich (7)
Drug Discovery Moffitt Cancer Center Tampa, FL, USA (7)
Head of the Curie Institute Mass Spectrometry Platform (7)
Institute for Systems Biology, Seattle, WA, USA (6)
Department Biochemistry of Plant Interactions, Leibniz Institute of Plant Biochemistry, 06120 Halle (Saale), Germany (6)
Institute of Molecular Systems Biology, Department of Biology, ETH Zurich, Zurich, Switzerland (6)
Washington University in St. Louis (6)
The Institute of Cancer Research, London (6)
University of Edinburgh (6)
Wellcome Trust Sanger Institute (6)
University Hospital Cologne (6)
Research Unit for Molecular Medicine, Department of clinical Medicine, Aarhus University, Aarhus, Denmark (5)
The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China. (5)
Brigham and Women's Hospital, Harvard Medical School (5)
Thoracic Oncology Moffitt Cancer Center Tampa, FL, USA (5)

Keyword

Cetuximab (21)
Bevacizumab (21)
Oxaliplatin (16)
Fluorouracil (14)
Leucovorin (13)
Irinotecan (12)
Panitumumab (9)
Trastuzumab (8)
Immunotherapy (8)
Levoleucovorin (7)
Folic Acid (5)
Antibodies (5)
Antibodies, Monoclonal (5)
Nivolumab (5)
CAR-T (4)
Atezolizumab (4)
Colorectal (4)
Pertuzumab (4)
Adjuvant (3)
Erbitux (3)
Palbociclib (3)
Pemetrexed (3)
Liver metastasis (3)
FOLFOX (3)
CEA (3)
Regorafenib (3)
Durvalumab (3)
Colonoscopy (3)
Screening (3)
Aflibercept (3)

IsPrivate

False (56)

Model Flag

Non Kinetic (1)

Submitter Keywords

Immuno-oncology (7)
Machine Learning Model (5)
FAIR-AIML (4)
Ersilia (3)
FROG (3)
Manuscript Accepted (2)
Not Peer Reviewed (2)
TransQST (1)

Classification

bacteria (285)
viruses (84)
protozoa (76)
fungi (44)
helminths (11)

Modification

4x(15)N labeled L-arginine (12)
2x(15)N labeled L-lysine (10)
N6 (6)
N6-dimethyl-L-lysine (5)
57.021464 (5)
15.994915 (4)
4-tetrahydrothiazine-3-carboxylic acid (4)
42.010565 (3)
4x(2)H labeled dimethylated residue (2)
-18.010565 (2)
-17.026549 (2)
+3amu) (2)
Not available (2)
28.0313 (1)
Heavy form - site K (1)
Heavy form (1)
Medium form - site K (1)
Medium form - site N-term (1)
MTRAQ heavy (1)
ITRAQ4plex-117 (1)
4-dinitrophenyl modified residue (1)
79.966331 (1)
3x(2)H labeled N6-acetyl-L-lysine (1)

Study type

Transcription profiling by array (3465)
RNA-seq of coding RNA (836)
ChIP-seq (432)
ChIP-chip by tiling array (233)
Comparative genomic hybridization by array (221)
RNA-seq of non coding RNA (207)
Unknown experiment type (135)
Other (134)
DNA-seq (122)
Methylation profiling by array (114)
RNA-seq of coding RNA from single cells (114)
Methylation profiling by high throughput sequencing (82)
Genotyping by array (63)
Transcription profiling by RT-PCR (30)
Transcription profiling by tiling array (25)
ChIP-chip by array (23)
RNA-seq of total RNA (23)
Genotyping by high throughput sequencing (21)
Proteomic profiling by array (19)
RNAi profiling by array (17)
Cell line - High-throughput sequencing (16)
MicroRNA profiling by array (16)
Transcription profiling by SAGE (15)
Human - High-throughput sequencing (10)
Animal - High-throughput sequencing (10)
MicroRNA profiling by high throughput sequencing (9)
CUT&RUN (8)
Human - Single-cell sequencing (6)
Bisulfite-seq (5)
High-throughput sequencing (4)

Release Date

2025 (22338)
2022 (16935)
2023 (15633)
2021 (14905)
2024 (14727)
2020 (11273)
2019 (8734)
2018 (7607)
2017 (6534)
2016 (6182)
2015 (5503)
2014 (4574)
2013 (3639)
2026 (3358)
2012 (2823)
2011 (2354)
2010 (2198)
2009 (1284)
2008 (1149)
2007 (660)
2006 (500)
2005 (347)
2004 (229)
2003 (174)
2001 (131)
2002 (125)
2000 (111)
1999 (72)
1998 (65)
1997 (27)

Location

China (53)
United States (41)
France (37)
Germany (18)
United Kingdom (16)
Italy (16)
Spain (14)
Belgium (14)
Japan (13)
Australia (12)
Canada (12)
Netherlands (12)
Austria (8)
South Korea (7)
Poland (6)
Switzerland (4)
Norway (3)
Romania (3)
Greece (3)
Finland (2)
Ireland (2)
Taiwan (2)
India (2)
Portugal (2)
Denmark (2)
Israel (2)
Hungary (2)
Russia (2)
Sweden (2)
Czechia (2)

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Compilation of transcriptomics, non-targeted metabolomics and targeted metabolomics data in bovine mammary epithelial cells stimulated by ten different essential amino acids (Targeted metabolomics)

Divergence in the targeted amino acid profilings of bovine mammary epithelial cells (BMECs) were systematically captured with regard to 10 individual essential amino acid (EAA) availability. BMECs cultured in 6-well plates were first serum-starved overnight and subsequently assigned to 1 of 12 tr...

2024-03-04 | MTBLS3956 | MetaboLights

Bridging Targeted (Zeno MRM-HR) and Untargeted (SWATH) LC–HRMS in a Single Run for Sensitive Exposomics

Traditionally, chemical exposure has been assessed by low-resolution mass spectrometry via targeted approaches due to the typically extremely low concentration of such compounds in biological samples. Nevertheless, untargeted approaches are now becoming a promising tool for a broader investigatio...

2025-08-28 | MTBLS10565 | MetaboLights

Dried blood spots analysis for targeted and non-targeted exposomics

Dried blood spots (DBS) are an established sample type, widely used in newborn screening programs for monitoring metabolic diseases. Their minimally invasive nature offers great promise for assessing chemical exposures, particularly during early life stages and in large-scale epidemiological stud...

2025-10-09 | MTBLS13065 | MetaboLights

Targeted Metabolome of Caenorhabditis elegans

The effect of Lactiplantibacillus plantarum Q7 on SCFAs in Caenorhabditis elegans

2026-07-20 | MTBLS14034 | MetaboLights

Flavonoid-targeted metabolomic analysis.

Flavonoids, one of the major groups of root exudates, are active molecules mediating plant-PGPR interactions. Flavonoids can alleviate nutrient deficiencies and drought stress to maintain normal plant growth. Here, We used flavonoid targeted metabolomic analysis to profile flavonoid components an...

2025-12-14 | MTBLS13507 | MetaboLights

targeted metabolomics of rat's serum

Podophyllotoxin (PPT) exhibits limited clinical utility due to its nephrotoxicity, and its underlying mechanisms remain poorly understood. This study employs the toxicological evidence chain (TEC) framework and integrated multi-omics analyses to investigate the potential involvement of the microbiot...

2026-06-27 | MTBLS14868 | MetaboLights

Targeted lipidomics in Alexander's disease cellular models

High-throughput targeted lipidomic data obtained from biological replicates (n=12) of four cellular models of Alexander disease using U-87 MG non-transfected and GFP-GFAP expressing cells (WT, R239C, R239G, R79C, and E373K variants).

2026-09-28 | MTBLS15503 | MetaboLights

Characterizing COPD phenotypes with a targeted signaling lipids metabolomics approach

A targeted metabolomics approach reveals distinct metabolic patterns associated with different GOLD stages, KNGF profiles and SYS subtypes in COPD patients, highlighting unique mechanisms and pathways underlying various COPD classification systems.

2025-07-21 | MTBLS11748 | MetaboLights

Compilation of transcriptomics, non-targeted metabolomics and targeted metabolomics data in bovine mammary epithelial cells stimulated by ten different essential amino acids (Untargeted metabolomics)

Divergence in the non-targeted metabolite profilings of bovine mammary epithelial cells (BMECs) were systematically captured with regard to 10 individual essential amino acid (EAA) availability. BMECs cultured in 6-well plates were first serum-starved overnight and subsequently assigned to 1 of 1...

2024-03-04 | MTBLS7789 | MetaboLights

widely targeted metabolomic analysis

Based on widely targeted metabolomic analysis, we explored the differences in metabolite composition and content of tomato fruits with different genotypes or exogenous metabolites were added. In addition, we also investigated the effects of different treatments on the composition and content of b...

2025-12-14 | MTBLS13506 | MetaboLights