Taylor S S - OmicsDI

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Unknown (10382)
Transcriptomics (312)
Proteomics (287)
Genomics (223)
Multiomics (78)
Metabolomics (43)
Genomic (12)
Models (3)
Clinical (1)
Methylation profiling (1)
Other (1)

Organisms

Homo sapiens (537)
Mus musculus (117)
Solanum tuberosum (9)
Saccharomyces cerevisiae (7)
Rattus norvegicus (7)
Arabidopsis thaliana (6)
Danio rerio (6)
Staphylococcus aureus (5)
Paramecium tetraurelia (4)
Klebsiella pneumoniae (4)
Bos taurus (3)
Caenorhabditis elegans (3)
Toxoplasma gondii (3)
Populus trichocarpa x Populus deltoides (2)
Macaca mulatta (2)
Neurospora crassa (2)
Saccharina latissima (2)
Oryza sativa (2)
Adenolobus pechuelii (1)
Gambusia holbrooki (1)
Saccharomyces cerevisiae BY4741 (1)
Shigella sonnei (1)
Populus alba (1)
Picea sitchensis (1)
Shewanella oneidensis MR-1 (1)
Populus tomentosa (1)
Populus x canadensis (1)
Pan troglodytes (1)
Monodelphis domestica (1)
Streptococcus pyogenes (1)

Organisms

Homo sapiens (2)
Mus musculus (2)
Gambusia holbrooki (1)
Toxoplasma gondii (1)

Repository

biostudies-arrayexpress (348)
EGA (176)
pride (174)
PeptideAtlas (79)
MetaboLights (40)
MassIVE (32)
dbGaP (12)
ENA (11)
geo (4)
BioModels (3)
GNPS (3)
GPMDB (1)
PanoramaPublic (1)

Tissue

Cell culture (31)
Others (24)
Brain (13)
Digestive System (11)
Fibroblast (10)
Epithelial cell (8)
Permanent cell line cell (8)
Whole body (8)
Lung (7)
Heart (6)
Liver (6)
Male Reproductive System (6)
Blood (6)
Female Reproductive System (5)
Colon epithelial cell (5)
Heart (5)
Kidney (5)
Brain (4)
Liver (4)
Plant cell (4)
Skeletal muscle (4)
T cell (4)
Adrenal Gland (3)
Eye (3)
Kidney (3)
Lung (3)
Blood cell (3)
Blood plasma (3)
Pancreas (2)
Urinary Bladder (2)

Disease

Breast cancer (7)
Colon cancer (4)
Infiltrating ductal carcinoma (3)
Brain cancer (3)
Cardiovascular system disease (3)
Disease free (3)
Mitochondrial complex I deficiency (2)
Normal (2)
Medulloblastoma (2)
Childhood medulloblastoma (2)
Inflammatory bowel disease (2)
Mitochondrial metabolism disease (2)
Non-small cell lung carcinoma (2)
Parkinson's disease (2)
Prostate adenocarcinoma (2)
Phyllodes tumor (1)
Post-stasis (1)
Colon cancer metastasis (1)
Coronary artery disease (1)
Unstable atherosclerotic plaque region (1)
Colorectal cancer (1)
Not Available (1)
Acute leukemia (1)
Amyloidosis (1)
Amyotrophic lateral sclerosis (1)
Brain glioblastoma multiforme (1)
Cachexia (1)
Caffey disease (1)
Cataract (1)
Cervix carcinoma (1)

Technology Type

Mass Spectrometry (174)
Shotgun proteomics (77)
Bottom-up proteomics (42)
Mass spectrometry (32)
Affinity purification coupled with mass spectrometry proteomics (26)
Data-dependent acquisition (24)
Data-independent acquisition (12)
Gel-based experiment (12)
Illumina 15K (8)
NMR spectroscopy (6)
SWATH MS (6)
Mass spectrometry assay (5)
Illumina HiSeq 2000 (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Top-down proteomics (4)
HDMSE (3)
Illumina HiSeq 2000, Illumina Genome Analyzer IIx (2)
MSE (2)
Mass spectrometry imaging (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Affymetrix OncoScan FFPE Express (1)
Complete Genomics, unspecified (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, HumanMethylation450k Bead Chip - Genome Studio, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000, ILLUMINA (1)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Illumina HiSeq 2500 (ILLUMINA), AB SOLiD System (ABI_SOLID) (1)
Illumina OncoArray (1)
DiaPASEF (1)

Instrument Platform

LTQ Orbitrap Velos (37)
Illumina HiSeq 4000 (13)
Illumina NovaSeq 6000 (6)
Illumina HiSeq 2000 (6)
NextSeq 500 (5)
Orbitrap Fusion Lumos (4)
Illumina HiSeq 2500 (3)
6510 Quadrupole Time-of-Flight LC/MS (3)
GenePix 4000B [Axon Instruments] (2)
Agilent 5975C Series GC/MSD (2)
Q Exactive GC-MS Orbitrap (Thermo Scientific) (2)
Illumina-compatible library preparation equipment (1)
Monarch RNA purification column system (1)
Standard mammalian cell culture equipment (1)
Desktop (1)
Bacteriological Laboratory (1)
Quantseq FWD kit (Lexogen, Austria) was used to prepare libraries for NGS. Reverse transcription of RNA, amplification of libraries, quality control of libraries and purification were performed exactly as described in manual provided with kit. (1)
RNAeasy kit (1)
Cell culture lab (1)
10x machine (1)
Illumina Human-12 v1 Expreesion BeadChip (1)
G2505B scanner (Agilent) (1)
Agilent G2505B Scanner (1)
ArrayWoRx Biochip Reader [Applied Precision] (1)
GenePix Personal 4100A [Axon Instruments] (1)
GenePix 4000A [Axon Instruments] (1)
NanoDrop (1)
DNA Microarray Scanner BA [Agilent Technologies] (1)
Illumina NovaSeq X (1)
Illumina MiSeq (1)

Publication Date

2014 (117)
2013 (53)
2012 (50)
2015 (46)
2010 (42)
2025 (40)
2011 (38)
2024 (36)
2021 (32)
2026 (29)
2020 (28)
2019 (26)
2016 (26)
2022 (25)
2023 (23)
2017 (16)
2018 (13)
2009 (12)
2006 (9)
2008 (7)
2007 (7)
2005 (3)
2004 (3)

UNIPROT ID/AC

A5A3E0 (78)
A6NHL2 (78)
A6NNZ2 (78)
B3KML9 (78)
B4DHB3 (78)
B4E3A4 (78)
B9VP19 (78)
E5RK69 (78)
E7EX29 (78)
G8JLB6 (78)
H0Y5C6 (78)
H0Y5F3 (78)
H0YM50 (78)
H7BZ94 (78)
H7C144 (78)
I3L4N8 (78)
J3KPS3 (78)
J3QRK5 (78)
O00299 (78)
O14773 (78)
O43707 (78)
O43707-3 (78)
O75369 (78)
O75369-8 (78)
O75390 (78)
O75947 (78)
O95716 (78)
P00367 (78)
P00558 (78)
P02042 (78)

ENSEMBL ID

ENSG00000170477 (76)
ENSG00000229353 (51)
ENSG00000147251 (29)
ENSG00000247315 (17)
ENSG00000204131 (10)
ENSG00000214897 (3)
ENSG00000176092 (2)

CHEBI ID

CHEBI:15428 (11)
CHEBI:30769 (11)
CHEBI:15603 (10)
CHEBI:16643 (10)
CHEBI:16977 (10)
CHEBI:17191 (10)
CHEBI:17295 (10)
CHEBI:17895 (10)
CHEBI:18019 (10)
CHEBI:32816 (10)
CHEBI:6650 (10)
CHEBI:15741 (9)
CHEBI:16857 (9)
CHEBI:17115 (9)
CHEBI:17154 (9)
CHEBI:30915 (9)
CHEBI:15756 (8)
CHEBI:15971 (8)
CHEBI:16335 (8)
CHEBI:16414 (8)
CHEBI:16704 (8)
CHEBI:17196 (8)
CHEBI:17203 (8)
CHEBI:17268 (8)
CHEBI:17306 (8)
CHEBI:17568 (8)
CHEBI:18012 (8)
CHEBI:15344 (7)
CHEBI:15351 (7)
CHEBI:15824 (7)

Metabolite Name

L-Phenylalanine (8)
Acetoacetic acid (7)
L-Alanine (7)
L-Isoleucine (7)
L-Methionine (7)
L-Proline (7)
L-Tyrosine (7)
L-Valine (7)
Succinic acid (7)
Uracil (7)
Adenine (6)
Adenosine (6)
Citric acid (6)
D-Glucose (6)
Guanine (6)
Hypoxanthine (6)
L-Leucine (6)
L-Threonine (6)
Maleic acid (6)
Malic acid (6)
Ornithine (6)
Palmitic acid (6)
Thymine (6)
Uridine (6)
3-Hydroxyisovaleric acid (5)
3-Phosphoglyceric acid (5)
Betaine (5)
Capric acid (5)
Caproic acid (5)
Caprylic acid (5)

First Public Date

2014 (4)
2016 (2)
2024 (1)
2021 (1)
2020 (1)
2018 (1)
2017 (1)

Modelling Approach

Ordinary differential equation model (3)

Study status

Active, not recruiting (1)

Lab affiliation

Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, London, W12 0BZ, UK The Francis Crick Institute, London, NW1 1AT, UK (4)
Protein Biogenesis Lab, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT (4)
Executive Science Officer, BioFrontiers InstituteDistinguished ProfessorProfessor, Howard Hughes Medical Institute MOLECULAR CELLULAR AND DEVELOPMENTAL BIOLOGY CU DENVER SCHOOL OF MEDICINE (3)
Center for Proteomics & Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (2)
Division of Cell Signalling and Immunology School of Life Sciences University of Dundee Dundee (2)
Keck MS & Proteomics Resource Yale School of Medicine (2)
Liverpool John Moores University (2)
Max Planck Institute for the Science of Human History (2)
Mitochondrial Research Group, Faculty of Medical Sciences, Newcastle University, UK (2)
Pacific Northwest National Laboratory (2)
School of Life and Environmental Sciences, University of Sydney, NSW 2006 Australia (2)
Senior Director, Dynamic Omics, CGR, One Medimmune Way Gaithersburg, MD 20878 (2)
Sequence database group (2)
The Hospital for Sick Children (2)
(Head, NHS Highly Specialised Mitochondrial Diagnostic Laboratory and Professor of Mitochondrial Pathology), Wellcome Centre for Mitochondrial Research, Newcastle University, UK (1)
1Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, 3010, Australia 2Murdoch Children’s Research Institute, Melbourne, VIC 3052, Australia 3Victorian Clinical Genetics Services, Murdoch Children’s Research Institute, Melbourne, VIC, 3052, Australia (1)
Arvinas Operations, Inc., 5 Science Park, 395 Winchester Avenue, New Haven, Connecticut 06511 United States (1)
Associate Professor, School of Biosciences, Faculty of Science, Univerisity of Nottingham Malaysia campus, Malaysia (1)
Australian National University, ACT, Australia (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive CCSR 3205b Stanford, CA 94305-5175 (1)
Boston Childrens Hospital Harvard Medical School (1)
Cancer Research UK Cambridge Institute, Li Ka Shing Centre , University of Cambridge, Robinson Way, Cambridge CB2 0RE, UK (1)
Cantrell Lab, Cell Signalling & Immunology, School of Life Sciences, University of Dundee (1)
Cellzome (1)
Center for Cancer and Immunology Research, Children’s Research Institute, Children’s National Health System (1)
Chromatin Structure & Mobile DNA Laboratory, The Francis Crick Institute, London, NW1 1AT, UK. (1)
Columbia University, Department of Biochemistry and Molecular Biophysics, USA (1)
Conway Institute of Biomolecular and Biomedical Research,School of Medicine, University College Dublin (1)
Department of Anatomy Cell Biology & Physiology Indiana University School of Medicine. Neurosciences Research Building 320 W. 15th Street, NB-214G Indianapolis, IN 46202 (1)
Department of Anesthesiology and Critical Care Medicine Children’s Hospital of Philadelphia University of Pennsylvania Philadelphia, Pennsylvania (1)

IsPrivate

False (3)

Submitter Keywords

Immuno-oncology (1)

Classification

protozoa (1)

Modification

Not available (2)
2x(15)N labeled L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (189)
RNA-seq of coding RNA (52)
ChIP-seq (29)
Comparative genomic hybridization by array (17)
Methylation profiling by array (14)
Transcription profiling by tiling array (7)
Other (5)
Methylation profiling by high throughput sequencing (5)
RNA-seq of total RNA (5)
Unknown experiment type (4)
Genotyping by array (4)
RNA-seq of coding RNA from single cells (3)
Transcription profiling by RT-PCR (2)
DNA-seq (2)
RNA-seq of non coding RNA (2)
Cell line - Single-cell sequencing (1)
ChIP-chip by tiling array (1)
Cell line - One-color microarray (1)
Animal - High-throughput sequencing (1)
Proteomic profiling by mass spectrometer (1)
RIP-seq (1)
Interventional (1)

Release Date

2022 (1090)
2025 (1027)
2021 (1026)
2023 (1024)
2024 (930)
2020 (823)
2019 (710)
2018 (617)
2017 (498)
2015 (487)
2016 (479)
2014 (373)
2013 (302)
2012 (291)
2011 (258)
2010 (214)
2026 (155)
2009 (130)
2008 (96)
2007 (64)
2006 (40)
2005 (23)
2004 (22)
2003 (21)
2001 (9)
2002 (7)
2000 (7)
1999 (3)
1998 (3)
1997 (1)

Location

Australia (1)

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Transcription profiling of human HeLa cells synchronized at the G1-S boundary and then sampled at 2-hour intervals during S-phase

The experimental strategy adopted to map this profile involved isolation of replication products from HeLa cells synchronized at the G1-S boundary by thymidine-aphidicolin double block. Cells released from the block were labeled with BrdU at every two-hour interval of the 10 hours of S-phase and DNA...

ORGANISM(S): Homo sapiens

2006-11-02 | E-MEXP-708 | biostudies-arrayexpress

Transcriptional reprogramming of engineered cellobiose-utilizing Saccharomyces cerevisiae in response to cellobiose revealed by RNA-Seq

Saccharomyces cerevisiae cannot metabolize cellobiose in nature. Here, S. cerevisiae was engineered to achieve cellobiose utilization by introducing both a cellodextrin transporter gene (cdt-1) and an intracellular β-glucosidase gene (gh1-1) from Neurospora crassa. We sequenced mRNA from anaerobic e...

ORGANISM(S): Saccharomyces cerevisiae

2015-04-10 | E-GEOD-54825 | biostudies-arrayexpress

Bacillus anthracis SlaQ Promotes S-Layer Protein Assembly.

Not available

S-EPMC4560277 | biostudies-literature

Assembly and Function of the Bacillus anthracis S-Layer.

Not available

S-EPMC6190687 | biostudies-literature

Pelagostrobilidium neptuni (Montagnes and Taylor, 1994) and Strombidium biarmatum nov. spec. (Ciliophora, Oligotrichea): phylogenetic position inferred from morphology, ontogenesis, and gene sequence data.

Not available

S-EPMC3303134 | biostudies-literature

Why does oxamniquine kill Schistosoma mansoni and not S. haematobium and S. japonicum?