Technological - OmicsDI

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Unknown (30998)
Genomics (1278)
Proteomics (296)
Transcriptomics (174)
Metabolomics (29)
Other (21)
Clinical (7)
Genomic (6)
Methylation profiling (6)
Models (5)

Organisms

Homo sapiens (151)
Mus musculus (58)
Saccharomyces cerevisiae (12)
Sus scrofa (5)
Oryza sativa (4)
Capra hircus (3)
Plasmodium falciparum (3)
Gallus gallus (3)
Arabidopsis thaliana (3)
Rattus norvegicus (3)
cellular organisms (2)
Vitis vinifera (2)
Bemisia tabaci (2)
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Eucalyptus grandis x Eucalyptus urophylla (2)
Eucalyptus (2)
Pan troglodytes (2)
Macaca fascicularis (2)
synthetic construct (2)
Bos taurus (2)
Schizosaccharomyces pombe (2)
Salmonella enterica (1)
Brassica napus (1)
Apis mellifera (1)
Campylobacter jejuni (1)
Potentilla indica (1)
Microchloropsis salina (1)

Organisms

Homo sapiens (211)
Mus musculus (98)
Plasmodium falciparum (42)
Saccharomyces cerevisiae (17)
Escherichia coli (9)
Populus tremula x Populus alba (8)
Gallus gallus (8)
Plasmodium falciparum 3D7 (7)
Pseudomonas aeruginosa PAO1 (7)
Canis lupus familiaris (7)
air metagenome (7)
Limosilactobacillus fermentum (6)
Enterococcus faecalis OG1RF (5)
Lactiplantibacillus plantarum (5)
Pseudomonas aeruginosa (5)
Staphylococcus aureus (5)
Vitis vinifera (5)
soil metagenome (5)
Lacticaseibacillus paracasei (4)
Salmonella enterica subsp. enterica (4)
Solanum lycopersicum (4)
activated sludge metagenome (4)
Arabidopsis thaliana (4)
bioreactor metagenome (4)
Leptospira interrogans serovar Manilae (3)
Lactococcus lactis subsp. lactis (3)
Leuconostoc mesenteroides (3)
Populus trichocarpa (3)
Aspergillus fumigatus (3)
Drosophila melanogaster (3)

Repository

ENA (1226)
pride (169)
geo (151)
PAXDB (91)
biostudies-arrayexpress (76)
EGA (20)
GNPS (17)
MassIVE (17)
MetaboLights (12)
iProX (10)
dbGaP (6)
BioModels (5)
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jPOST (4)
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EVA (1)
PeptideAtlas (1)

Tissue

Cell culture (24)
Blood plasma (16)
Blood (14)
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Blood cell (13)
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Permanent cell line cell (2)
Others (1)
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Gill cell line (1)
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Disease

Plasmodium falciparum malaria (24)
Breast cancer (6)
Disease free (6)
Not Available (5)
Cardiovascular system disease (4)
Alzheimer's disease (4)
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Dementia (3)
Colon cancer (2)
Retinoblastoma (2)
Type 2 diabetes mellitus (2)
Neoplasm Metastasis (1)
Glioblastoma (1)
Adenocarcinoma (1)
Colonic Neoplasms (1)
Enteritis (1)
Dengue hemorrhagic fever (1)
Keratitis (1)
Ovarian dysfunction (1)
Vascular dementia (1)
Open-angle glaucoma (1)
Septic shock (1)
Lattice corneal dystrophy (1)
Aortic valve stenosis (1)
Candidiasis (1)
Multiple sclerosis (1)
Endometrial cancer (1)
Obesity (1)
Cancer (1)
Pancreatic cancer (1)

Technology Type

Mass Spectrometry (169)
Shotgun proteomics (99)
Bottom-up proteomics (31)
Data-dependent acquisition (29)
SWATH MS (13)
Gel-based experiment (12)
Data-independent acquisition (7)
Top-down proteomics (7)
Mass spectrometry (6)
Mass spectrometry assay (5)
Affinity purification coupled with mass spectrometry proteomics (5)
SRM/MRM (4)
MSE (3)
RNA mass spectrometry (2)
All-ion fragmentation (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
ILLUMINA, Illumina HiSeq 2500 (1)
Applied Biosystems 3100 automated sequencer-GeneMarker v.1.6 (Softgenetics) (1)
Illumina Genome Analyzer II (1)
NMR spectroscopy (1)
DiaPASEF (1)
HDMSE (1)

Instrument Platform

TripleTOF 6600 (9)
Agilent 7890 A - 5975 C GC/MS (7)
Instrument (5)
Q Exactive (5)
Orbitrap Fusion (4)
Orbitrap Fusion Lumos (3)
Illumina Genome Analyzer IIx (2)
Illumina NovaSeq 6000 (2)
Q Exactive Plus (2)
Q Exactive HF (2)
LTQ Orbitrap (2)
FACSAria III (BD Sciences) (1)
HPC (1)
10x Genomics Chromium (1)
NovaSeq PE150 (1)
Spectrum™ Plant Total RNA Kit (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
MS:1003123 (1)
4800 Plus MALDI TOF/TOF (1)
Orbitrap Astral (1)
Exactive Plus (1)
ZenoTOF 7600 (1)
LTQ Orbitrap Velos (1)
LTQ Orbitrap Elite (1)
TripleTOF 5600+ (1)
LTQ Orbitrap XL (1)
Orbitrap Eclipse (1)
TimsTOF Pro (1)

Publication Date

2020 (119)
2023 (47)
2025 (41)
2021 (41)
2024 (36)
2026 (34)
2022 (34)
2019 (26)
2010 (23)
2016 (20)
2018 (19)
2017 (18)
2015 (18)
2011 (18)
2013 (13)
2014 (12)
2012 (11)
2009 (7)
2004 (7)
2008 (2)
2001 (2)
2007 (1)
2006 (1)

UNIPROT ID/AC

OTU9_ARATH (3)
AFC2_ARATH (3)
F4JIX9_ARATH (3)
Q8GYQ9_ARATH (3)
FLOT1_ARATH (3)
F4J3S6_ARATH (3)
MEX1_ARATH (3)
DPNP4_ARATH (3)
PHR1_ARATH (3)
AML3_ARATH (3)
Q0WNZ8_ARATH (3)
O15297 (1)
Q9H2X6 (1)
Q8IUQ4 (1)
P25084 (1)
Q07817 (1)
P42575 (1)
O96020 (1)
P42212 (1)
Q01094 (1)
P31947 (1)
P06400 (1)
Q07812 (1)
P27986 (1)
Q92934 (1)
Q13315 (1)
P60484 (1)
P31749 (1)
P04637 (1)
Q00987 (1)

ENSEMBL ID

ENSG00000229353 (1)
ENSG00000170477 (1)

CHEBI ID

CHEBI:27897 (3)
CHEBI:30769 (3)
CHEBI:22470 (2)
CHEBI:17263 (2)
CHEBI:18237 (2)
CHEBI:28300 (2)
CHEBI:24898 (2)
CHEBI:16634 (2)
CHEBI:15741 (2)
CHEBI:31575 (2)
CHEBI:28044 (2)
CHEBI:68641 (2)
CHEBI:27266 (2)
CHEBI:88542 (2)
CHEBI:16449 (2)
CHEBI:32063 (2)
CHEBI:17306 (2)
CHEBI:18012 (2)
CHEBI:32805 (2)
CHEBI:78320 (2)
CHEBI:30915 (2)
CHEBI:33697 (1)
CHEBI:56080 (1)
CHEBI:33699 (1)
CHEBI:6080 (1)
CHEBI:79516 (1)
CHEBI:42156 (1)
CHEBI:34571 (1)
CHEBI:63924 (1)
CHEBI:8489 (1)

Metabolite Name

Tryptophan (3)
Boscalid (2)
Ethanolamine phosphate (2)
Histidine (2)
Glutamate (2)
Butylparaben (2)
Betaine (2)
Enterodiol (2)
Coumestrol (2)
Carnitine (2)
Choline (2)
Alanine (2)
Proline (2)
Glutamine (2)
Citrate (2)
Uridine (2)
Creatinine (2)
Creatine (2)
Glycerophosphocholine (2)
Cis aconitate (1)
UDP N acetyl glucosamine (1)
Glucose 1 Phosphate (1)
Dimethylsulfone (1)
N acetyl Glucosamine (1)
Riddeliin (1)
Benzylbutylphthalate (1)
Benzophenone 1 (1)
Alternariolmonomethylether (1)
4-Methoxyestradiol (1)
2-Naphtol (1)

First Public Date

2024 (171)
2026 (129)
2014 (121)
2021 (114)
2025 (105)
2022 (104)
2023 (89)
2019 (85)
2020 (82)
2018 (63)
2015 (51)
2017 (47)
2013 (46)
2016 (17)
2012 (2)

Modelling Approach

Ordinary differential equation model (3)
Agent-based model (1)
Constraint-based model (1)

Study status

Recruiting (3)
Completed (2)
Enrolling by invitation (1)
Not provided (1)

Lab affiliation

School of Biological Sciences, Nanyang Technological University (13)
School of Biological Sciences, Nanyang Technological University, Singapore (11)
Nanyang Technological University (11)
School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551. (3)
VIB-UGent Center for Medical Biotechnology UGent Department of Biomolecular Medicine Technologiepark-Zwijnaarde 75 B9052 Gent Belgium (3)
Nanyang Technological University, Singapore (2)
School of Biological Sciences Division of Chemical Biology & BioTechnology Nanyang Technological University, 60 Nanyang Drive, Singapore 637551 (2)
Chemistry I, Department of Medical Biochemistry and Biophysics, Karolinska Institutet SE 17177 Stockholm, Sweden. Department of Pharmacological & Technological Chemistry, I.M. Sechenov First Moscow State Medical University, Moscow, 119146, Russia. (2)
ProGenTomics, Laboratory of Pharmaceutical Biotechnology,Ghent University (2)
Division of Physiological Chemistry I, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, SE-17 177 Stockholm, Sweden SciLIfeLab, SE-17 177 Stockholm, Sweden Department of Pharmacological & Technological Chemistry, I.M. Sechenov First Moscow State Medical University, Moscow, 119146, Russia (2)
Center for Technological Development in Health, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil (2)
Carnegie Institution at Stanford (2)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, CH-8093 Zurich, Switzerland. Faculty of Science, University of Zurich, CH-8057 Zurich, Switzerland (2)
Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore (2)
Department of Sciences and Technological Innovation, University of Piemonte Orientale, Italy (2)
School of biological Sciences, Nanyang Technological University, Singapore 637551 (2)
Lee Kong Chian School of Medicine, School of Biological Sciences, Nanyang Technological University, Singapore (2)
Ist. G. Gaslini (2)
University of Guelph 50 Stone Rd E Guelph, ON, Canada (1)
Ludwig-Maximilians-Universität Munich / Germany Department Biology I Plant Evolutionary Cell Biology (1)
School of Life Science & Research Center for Natural Peptide Drugs, Shaanxi Engineering & Technological Research Centre for Conservation & Utilization of Regional Biological Resources, Yanan University (1)
College of Life Sciences, Fujian Agriculture and Forestry University (1)
Flemish Institute for Technological Research (VITO) Boeretang 200 2400 Mol (1)
Associate Professor Director of Proteomics and Mass Spectrometry Facility School of Biological Sciences Nanyang Technological University 60 Nanyang Drive, Singapore 637551 Tel: (65) 6514-1006; Fax: (65) 6791-3856 Email: sksze@ntu.edu.sg Web: http://proteomics.sbs.ntu.edu.sg/ (1)
University of Eastern Piedmont Department of Sciences and Technological Innovation, University of Piemonte Orientale, Italy (1)
Max Planck Institute of Biochemistry Proteomics and Signal Transduction Am Klopferspitz 18 82152 Martinsried Germanry (1)
Leading scientist, head of Laboratory of Regenerative Biomedicine, Institute of Cytology, Russian Academy of Sciences (1)
Nanynag Technological University (1)
University of Eastern Piedmont Department of Sciences and Technological Innovation, University of Piemonte Orientale, Italy ( lab head ) (1)
Dr Peter C Dedon, Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA Singapore-MIT Alliance for Research and Technology, Antimicrobial Resistance Interdisciplinary Research Group, Campus for Research Excellence and Technological Enterprise, Singapore 138602, Singapore (lab head) (1)

Keyword

Colorectal cancer, cetuximab, biomarker, prometheus (1)
Exhaustive genetic and immunological analyses (1)
Targeted therapies (1)
Immunological tumor microenvironment (1)
Tumor microenvironment heterogeneity (1)
Molecular subtypes (1)
Multi-omics (1)
Kidney cancer (1)
Radiomics (1)
Artificial intelligence (1)
Radiosurgery (1)
Anastomotic leakage (1)
Liver cancer (1)
Colonoscopy (1)
Metabolomics (1)

IsPrivate

False (5)

Classification

bacteria (61)
protozoa (56)
fungi (6)
viruses (4)

Modification

N6 (1)

Study type

Transcription profiling by array (45)
RNA-seq of coding RNA (16)
Methylation profiling by high throughput sequencing (3)
Interventional (3)
Unknown experiment type (2)
Comparative genomic hybridization by array (2)
RNA-seq of non coding RNA (2)
Observational patient registry (2)
Observational (2)
Transcription profiling by SAGE (1)
ChIP-chip by tiling array (1)
Genotyping by array (1)
MicroRNA profiling by high throughput sequencing (1)
ChIP-seq (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (4864)
2022 (4387)
2023 (4278)
2024 (3916)
2021 (3027)
2020 (2282)
2019 (1787)
2018 (1427)
2017 (1095)
2016 (940)
2026 (711)
2015 (679)
2014 (499)
2013 (311)
2012 (217)
2011 (199)
2010 (142)
2009 (94)
2008 (74)
2007 (49)
2006 (24)
2005 (20)
2004 (17)
2003 (12)
2002 (8)
1999 (5)
1998 (4)
2001 (3)
2000 (1)
1997 (1)

Location

Spain (2)
France (2)
Ecuador (1)
Turkey (1)
South Korea (1)

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Precision Medicine: Technological Impact into Breast Cancer Diagnosis, Treatment and Decision Making.

Not available

S-EPMC8703478 | biostudies-literature

CSER: Clinical Sequencing in Cancer: Clinical, Ethical, and Technological Studies

PRJNA297609 | ENA

RNA-seq of various organs of Potentilla indica and Melastoma dodencadrum Lour.

Potentilla indica and Melastoma dodecandrum lour are medicinal herbs used in traditional Chinese medicine. We sampled the plants from Nanyang Technological University's herb garden for transcriptomics analysis.

ORGANISM(S): Potentilla indica

2023-03-21 | E-MTAB-12682 | biostudies-arrayexpress

Technological and Sensory Quality of Gluten-Free Pasta Made from Flint Maize Cultivars.

Not available

S-EPMC10378873 | biostudies-literature

Crop production in Russia 2030: Scenarios based on data from the scientific and technological development of the sector.

Not available

S-EPMC6552012 | biostudies-literature

Optimization of technological parameters for durum wheat pasta production with carrot powder and ion-ozonated water.

Not available

S-EPMC12738575 | biostudies-literature

Gene expression in cells encapsulated within different types of alginate microcapsules

D1 multipotent mesenchymal stromal cells (D1‐MSCs,ATCC® CRL 12424TM) and genetically modified with the lentiviral vector pSIN‐EF2‐Epo‐Pur to express erythropoietin (EPO). D1‐MSCs genetically modified to release EPO were immobilized into 3D alginatepoly‐ L‐lysine‐alginate (APA) microcapsules. Since d...

ORGANISM(S): Mus musculus

2017-10-30 | E-MTAB-5786 | biostudies-arrayexpress

The geography of technological innovation dynamics.

Not available

S-EPMC10687091 | biostudies-literature

Effects of paraprobiotics obtained by six distinct technological methods on biochemical parameters and intestinal microbiota of healthy rats

Effects of paraprobiotics obtained by six distinct technological methods on biochemical parameters and intestinal microbiota of healthy rats Metagenome

PRJNA628744 | ENA

How enterprise interactions in innovation networks affect technological innovation performance: The role of technological innovation capacity and absorptive capacity.

Not available

S-EPMC9980795 | biostudies-literature

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