Tests - OmicsDI

Show results for

Unknown (92378)
Genomics (3323)
Transcriptomics (3102)
Proteomics (1883)
Metabolomics (618)
Clinical (294)
Genomic (81)
Models (37)
Other (30)
Methylation profiling (25)
Multiomics (2)

Organisms

Homo sapiens (1876)
Mus musculus (818)
Rattus norvegicus (159)
Caenorhabditis elegans (133)
Arabidopsis thaliana (80)
Drosophila melanogaster (51)
Danio rerio (48)
Bos taurus (39)
Saccharomyces cerevisiae (37)
Gallus gallus (32)
Escherichia coli (21)
Sus scrofa (20)
Zea mays (18)
Streptococcus pneumoniae D39 (17)
Oryza sativa (17)
Daphnia magna (16)
Mycobacterium tuberculosis (13)
Bifidobacterium breve UCC2003 (12)
Candida albicans (10)
Escherichia coli K-12 (9)
Vibrio cholerae (9)
Oncorhynchus mykiss (8)
Yersinia pestis (8)
Schizosaccharomyces pombe (7)
Apis mellifera (7)
cellular organisms (6)
Mus sp. (4)
Severe acute respiratory syndrome coronavirus 2 (2)
Oryctolagus (1)
Mammalia (1)

Organisms

Homo sapiens (661)
Mus musculus (338)
Rattus norvegicus (62)
Arabidopsis thaliana (29)
Corynebacterium pseudotuberculosis (27)
Danio rerio (25)
Bifidobacterium breve UCC2003 (17)
Drosophila melanogaster (17)
Staphylococcus aureus (11)
Leptospira interrogans (10)
Caenorhabditis elegans (10)
Sus scrofa (10)
human gut metagenome (10)
Saccharomyces cerevisiae (10)
Escherichia coli (9)
Bos taurus (8)
Zea mays (7)
Gallus gallus (7)
soil metagenome (7)
Aplysia californica (5)
urine metagenome (5)
Daphnia magna (5)
Oncorhynchus mykiss (5)
Oryza sativa (5)
Mycobacterium tuberculosis (5)
bioreactor metagenome (5)
Tristaniopsis glauca (4)
Pimephales promelas (4)
Severe acute respiratory syndrome coronavirus 2 (4)
Citrus sinensis (4)

Repository

ENA (2764)
biostudies-arrayexpress (2515)
pride (1447)
geo (887)
MetaboLights (552)
EGA (334)
MassIVE (193)
iProX (125)
dbGaP (81)
GNPS (66)
jPOST (47)
BioModels (35)
PeptideAtlas (33)
PanoramaPublic (11)
PAXDB (5)
EVA (4)
PMR (2)

Tissue

Cell culture (278)
Brain (104)
Blood plasma (77)
Epithelial cell (72)
Liver (48)
Plant cell (48)
Permanent cell line cell (39)
Blood serum (35)
Blood (33)
Others (32)
Lung (29)
Heart (28)
Leaf (27)
Fibroblast (22)
Macrophage (22)
Kidney (21)
Blood cell (19)
Skeletal muscle (19)
Whole body (17)
Primary cell (16)
Cell suspension culture (15)
T cell (15)
Colon (14)
Embryonic stem cell (13)
Hepatocyte (13)
Saliva (13)
Stem cell (13)
Skin (12)
Bone marrow (10)
Urine (1)

Disease

Colorectal Neoplasms (127)
Breast cancer (26)
Colorectal cancer (18)
COVID-19 (11)
Melanoma (8)
Glioblastoma (7)
Normal (6)
Non-small cell lung carcinoma (6)
Multiple myeloma (5)
Cancer (4)
Hemophilia B (3)
Calcium metabolism disease (2)
Apparently healthy (2)
Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
Arrhythmias and right ventricular dysfunction (1)
Polycystic Lipomembranous Osteodysplasia with Sclerosing Leukoencephalopathy (1)
Osteosarcoma subtype fibroblastic (1)
Hepatocellular carcinoma-non tumorous region (1)
Asthma (1)
Fetal growth restriction (1)
Embryonic lethal at day 8.5 to 9.5 (1)
12 DAI with PepMV-EU isolate (1)
Hign immune pressure (1)
Myeloma (1)
Mock infected (1)
Colon carcinoma (1)
Nevus (1)
Diminished Ovarian Reserve (DOR) (1)
Chicken Anaemia Virus infected (1)
Acute promyelocytic leukemia (1)

Technology Type

Illumina HiSeq 2000 (8)
Illumina HiSeq 2500 (3)
ILLUMINA, NextSeq 500 (2)
ILLUMINA, Illumina HiSeq 2000 (2)
Illumina HiSeq 2000, ILLUMINA (2)
Illumina Genome Analyzer II (2)
Illumina Cardio-MetaboChip (1)
Illumina, Sequenom (1)
NextSeq 500, ILLUMINA (1)
ILLUMINA, NextSeq 500, HiSeq X Ten (1)
OXFORD_NANOPORE, MinION (1)
NextSeq 500, Illumina HiSeq 2500, ILLUMINA (1)
Infinium Omni2.5M (1)
Illumina Genome Analyzer II, ILLUMINA (1)
ABI_SOLID, Illumina HiSeq 2000, Illumina 450K, AB 5500xl Genetic Analyzer, AB 5500 Genetic Analyzer, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500 (1)
Illumina MiSeq, ILLUMINA (1)
Illumina HiSeq 4000, ILLUMINA (1)
Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina 450K (1)
Illumina HiSeq 4000, Illumina HiSeq 2500, ILLUMINA (1)
Illumina Omni 2.5, Illiumina Omni 2.5 (1)
HiSeq X Ten, ILLUMINA (1)
Illumina HumanExome-12v1_A (1)
HiSeq X Ten (1)
Illumina Genome Analyzer IIx, Illumina Genome Analyzer II (1)
Illumina HiSeq 2000, NextSeq 500, ILLUMINA (1)
Illumina HiSeq 2000, Illumina MiSeq (1)
Complete Genomics, Illumina HiSeq 2000 (1)

Instrument Platform

Illumina NovaSeq 6000 (169)
Illumina HiSeq 4000 (38)
NextSeq 500 (35)
Illumina HiSeq 2500 (34)
Illumina NovaSeq X (18)
Illumina HiSeq 2000 (13)
NextSeq 2000 (9)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (7)
NextSeq 550 (7)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel). (6)
DNBSEQ-G400 (6)
See manuscript (5)
Axon- GenePix4000B (5)
Axon GenePix 4000B scanning hardware (5)
NA (5)
Illumina MiSeq (5)
FastPrep‑24 homogenizer (MP Biomedicals) (4)
Agilent High resolution C scanner (4)
Illumina Genome Analyzer IIx (4)
Qubit 4.0 Fluorometer/ Agilen 5300 Fragment Analyzer (3)
Maxwell 16 LEV-plant RNA kit (3)
GenePix 4000B [Axon Instruments] (3)
TruSeq RNA Sample Prep Kit (3)
N/A (3)
Illumina HiSeq 1500 (3)
Standard molecular biology equipment (per Lexogen SENSE mRNA-seq kit protocol) (2)
NanoDrop ND-1000 spectrophotometer; Agilent 2100 Bioanalyzer (2)
FastPrep‑24 homogenizer (MP Biomedicals), operated at 5 m/s for 10 seconds. (2)
Macrogen (2)
Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice (2)

Publication Date

2025 (665)
2026 (496)
2013 (436)
2024 (428)
2022 (368)
2023 (347)
2015 (341)
2010 (341)
2021 (306)
2011 (293)
2014 (289)
2016 (222)
2012 (222)
2020 (187)
2018 (157)
2008 (155)
2019 (147)
2009 (140)
2017 (131)
2007 (68)
2005 (31)
2006 (28)
2004 (26)
2003 (3)
2002 (3)
2027 (2)

UNIPROT ID/AC

P07204 (4)
P02671 (4)
P00748 (4)
P03951 (4)
P07225 (4)
P04070 (4)
P01008 (4)
P10646 (4)
P12259 (4)
P00451 (4)
P00740 (4)
P00742 (4)
P08709 (4)
P13726 (4)
P00734 (4)
P03952 (3)
P00488 (3)
P05160 (3)
P00747 (3)
P02679 (3)
P02675 (3)
Q6ZRP7 (2)
Q8N7R0 (2)
Q01860 (2)
P01270 (2)
P04637 (2)
A0A1S3MBI7 (1)
A0A1S3RDV7 (1)
A0A1S3SLA8 (1)
B5X3P0 (1)

ENSEMBL ID

ENSG00000170477 (31)
ENSG00000165661 (2)
ENSG00000176654 (2)
ENSG00000204531 (2)
ENSG00000229353 (2)
ENSG00000247315 (1)

CHEBI ID

CHEBI:15428 (106)
CHEBI:16919 (96)
CHEBI:16761 (49)
CHEBI:15422 (37)
CHEBI:15366 (33)
CHEBI:28304 (4)
CHEBI:10033 (3)
CHEBI:28384 (3)
CHEBI:14575 (2)
CHEBI:17287 (2)
CHEBI:29108 (2)
CHEBI:18367 (2)
CHEBI:30751 (2)
CHEBI:28757 (2)
CHEBI:13097 (1)
CHEBI:21278 (1)
CHEBI:63163 (1)
CHEBI:6209 (1)
CHEBI:44590 (1)
CHEBI:21260 (1)
CHEBI:44513 (1)
CHEBI:6206 (1)
CHEBI:44708 (1)
CHEBI:44466 (1)
CHEBI:13094 (1)
CHEBI:47822 (1)
CHEBI:60107 (1)
CHEBI:21486 (1)
CHEBI:60111 (1)
CHEBI:43088 (1)

Metabolite Name

Hypoxanthine (99)
Creatine (98)
Uridine (96)
Taurine (93)
Uracil (91)
Creatinine (89)
Inosine (88)
Adenosine (87)
Xanthine (82)
L-Tyrosine (81)
L-Phenylalanine (77)
Choline (75)
Adenine (75)
Guanosine (75)
Ornithine (74)
L-Glutamine (74)
Betaine (69)
Cytidine (68)
Guanine (67)
Citric acid (66)
L-Histidine (63)
Riboflavin (63)
L-Tryptophan (63)
Uric acid (62)
L-Valine (62)
L-Proline (61)
Succinic acid (61)
L-Threonine (61)
Indole (61)
Palmitic acid (61)

First Public Date

2014 (382)
2025 (343)
2026 (296)
2024 (294)
2022 (226)
2023 (214)
2017 (184)
2021 (179)
2020 (163)
2019 (145)
2018 (101)
2015 (98)
2013 (69)
2016 (66)
2011 (2)
2012 (1)
2010 (1)

Modelling Approach

Ordinary differential equation model (18)
Constraint-based model (8)
Population model (3)
Finite element spatial model (1)
Machine learning (1)
Differential algebraic equation model (1)
Other (1)
Metabolic network (1)

Study status

Completed (133)
Recruiting (77)
Not provided (24)
Active, not recruiting (20)
Terminated (16)
Not yet recruiting (14)
Withdrawn (6)
Enrolling by invitation (2)
Ongoing (1)
Suspended (1)

Lab affiliation

Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (22)
The University of Melbourne (10)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for infection and immunity, Melbourne, 3000, Australia (8)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (7)
School of Biochemistry, Faculty of Life Sciences, University of Bristol,UK (6)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (6)
Department of Microbiology and Immunology, University of Melbourne, Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia (5)
Indiana University School of Medicine (5)
Molecular Genetics, RPTU Kaiserslautern (5)
University of Edinburgh (5)
University of Sydney (5)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute of Biomedical Research (4)
College of Life Sciences, South-Central University for Nationalities (4)
DEPARTMENT OF MEDICINE, ALL INDIA INSTITUTE OF MEDICAL SCIENCES, ANSARI NAGAR, NEW DELHI-110029 (4)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth St, Melbourne 3000, Australia (4)
Institut Pasteur (4)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (4)
Molecular Genetics, RPTU Kaiserslautern, Germany (4)
Proteomics Core Facility, Biozentrum, University of Basel, Switzerland (4)
The University of Sydney (4)
Toxicology of Contaminants Unit, Fougères Laboratory, French Agency for Food, Environmental and Occupational Health & Safety (ANSES), 35306 Fougères CEDEX, France. (4)
University Clinic for Poultry and Fish Medicine, University of Veterinary Medicine, Vienna, Austria (4)
1DST/NRF Centre of Excellence in Biomedical Tuberculosis research, SA MRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Department of Biomedical Science, Faculty of Medicine and Health Science, Stellenbosch University, Tygerberg, 7505, Cape Town, South Africa (3)
Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland (3)
Chair of Pharmacology Faculty of Medicine Jagiellonian University Medical College (3)
Clinical Division of Fish Medicine, University of Veterinary Medicine, Vienna, Austria (3)
Department of Molecular & Clinical Cancer Medicine Institute of Systems, Molecular & Integrative Biology University of Liverpool (3)
Department of Molecular Microbiology, Washington University School of Medicine, St Louis, MO 63110, USA. (3)
Functional proteomics group; Molecular Biomedicine department; CIB-CSIC (3)
Institute for Genetics, CECAD Research Center, University of Cologne, Joseph-Stelzmann-Straße 26, 50931 Cologne, Germany (3)

Keyword

Screening (14)
Colonoscopy (10)
Irinotecan (7)
Bevacizumab (7)
Fluorouracil (7)
Oxaliplatin (7)
Colorectal cancer screening (6)
Antibodies (6)
Immunotherapy (6)
Rectal cancer (5)
Antibodies, Monoclonal (5)
Capecitabine (5)
Cetuximab (5)
Fecal immunochemical test (4)
Liver Cancer (4)
Colorectal neoplasm (4)
Mass screening (4)
Nivolumab (4)
Immunoglobulins (4)
Leucovorin (4)
Fecal occult blood test (3)
Decision aid (3)
Decision making (3)
Cyclophosphamide (3)
Risk communication (3)
Cancer Screening (3)
Colorectal Cancer Screening (3)
Regorafenib (3)
Pembrolizumab (3)
Metastatic (3)

IsPrivate

False (35)

Model Flag

Non Kinetic (2)

Submitter Keywords

COVID-19 (3)
FAIR-AIML (2)
Machine Learning Model (2)
FROG (2)
Ersilia (1)
Not Peer Reviewed (1)

Classification

bacteria (115)
viruses (14)
protozoa (6)
fungi (5)
helminths (3)

Modification

Not available (3)
2x(15)N labeled L-lysine (2)
4-tetrahydrothiazine-3-carboxylic acid (2)
4x(15)N labeled L-arginine (2)
N6 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (1577)
RNA-seq of coding RNA (311)
ChIP-seq (98)
Comparative genomic hybridization by array (79)
RNA-seq of coding RNA from single cells (67)
Unknown experiment type (60)
ChIP-chip by tiling array (43)
Methylation profiling by array (39)
Other (30)
RNA-seq of non coding RNA (28)
RNA-seq of total RNA (25)
Transcription profiling by RT-PCR (17)
Proteomic profiling by array (17)
MicroRNA profiling by array (12)
Genotyping by array (11)
DNA-seq (10)
Transcription profiling by tiling array (8)
Animal - High-throughput sequencing (7)
Animal - One-color microarray (6)
Cell line - High-throughput sequencing (6)
ChIP-chip by array (6)
Methylation profiling by high throughput sequencing (6)
ATAC-seq (5)
Single nucleus RNA sequencing (5)
MicroRNA profiling by high throughput sequencing (4)
Human - Two-color microarray (3)
Human - One-color microarray (3)
Spatial transcriptomics by high-throughput sequencing (3)
ScATAC-seq (3)
CUT&RUN (3)

Release Date

2025 (12193)
2022 (12102)
2023 (10650)
2021 (10079)
2024 (9751)
2020 (7691)
2019 (5649)
2018 (4798)
2017 (3777)
2016 (3154)
2015 (2830)
2014 (2382)
2013 (1838)
2026 (1650)
2012 (1445)
2011 (1173)
2010 (1087)
2009 (742)
2008 (578)
2007 (366)
2006 (260)
2005 (185)
2004 (122)
2003 (109)
2002 (72)
2001 (61)
2000 (55)
1999 (46)
1998 (39)
1997 (5)

Location

United States (117)
United Kingdom (33)
Australia (32)
France (19)
China (17)
Canada (14)
Germany (12)
Italy (12)
Netherlands (9)
Spain (8)
Belgium (6)
Japan (6)
Hong Kong (5)
Denmark (5)
South Korea (5)
Brazil (5)
Puerto Rico (4)
Sweden (4)
Switzerland (4)
Iran (3)
Israel (3)
Taiwan (2)
New Zealand (2)
Austria (2)
Iraq (1)
Guam (1)
Kazakhstan (1)
Vietnam (1)
Norway (1)
Thailand (1)

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Experiment design beyond gut feeling: statistical tests and power to detect differential metabolites in mass spectrometry data

We use metabolite profiles of the model plant Arabidopsis thaliana measured on an UPLC-ESI/QqTOF-MS as a pilot study to estimate variance levels which then can be used to obtain several statistical parameters (e.g. minimum detectable effect, number of required replicates and error probabilities) whi...

2014-11-06 | MTBLS74 | MetaboLights

Evidence supporting predicted metabolic pathways for Vibrio cholerae: gene expression data and clinical tests

Abstract: Vibrio cholerae, the etiological agent of the diarrheal illness cholera, can kill an infected adult in 24 h. V.cholerae lives as an autochthonous microbe in estuaries, rivers and coastal waters. A better understanding of its metabolic pathways will assist the development of more effective ...

ORGANISM(S): Vibrio cholerae

2006-05-20 | E-GEOD-4877 | biostudies-arrayexpress

Plasmodium falciparum enrichment tests

PRJEB2080 | ENA

Koeller2021 - PBPK model of ICG liver function tests

Physiollogically based pharmacokinetic (PBPK) model of indocyanine-green (ICG) liver function tests.

2023-01-18 | MODEL2301090001 | BioModels

Defining Relationships Among Tests for Kidney Transplant Antibody-Mediated Rejection

PRJNA1216662 | ENA

Defining the relationships among four tests with antibody-mediated rejection in heart transplants

PRJNA1295773 | ENA

Developmental learning disorders in children with prenatal/perinatal exposure to hypoxia: A systematic review protocol.

Not available

S-EPMC10588827 | biostudies-literature

Developmental dyslexia in children with perinatal exposure to hypoxia: A systematic review.

Not available

S-EPMC11392324 | biostudies-literature

Ectocarpus sp. Ec197-21

Ectocarpus mutagenesis tests

PRJNA326209 | ENA

Cancer Genome Libraries Tests

Testing library production. Genomic libraries (500 bps) will be generated from total genomic DNA derived from commomon epithelial cancer samples and subjected to paired end sequencing on the llumina plateforms. Paired reads will be mapped to build 37 of the human reference genome to facilitate the ...

EGAS00001000208 | EGA

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101773 Results

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