Theobroma cacao

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Unknown (259)
Genomics (123)
Transcriptomics (46)
Proteomics (11)
Metabolomics (8)
Other (3)
Methylation profiling (1)

Organisms

Theobroma cacao (33)
Homo sapiens (6)
Haemophilus influenzae (4)
Moniliophthora perniciosa (4)
Mus musculus (3)
Haemophilus influenzae 86-028NP (1)
Bartonella koehlerae (1)
Francisella tularensis (1)
Caenorhabditis elegans (1)
Moniliophthora roreri (1)
Panicum hallii (1)
Citrus x clementina (1)
Erythranthe guttata (1)
Ricinus communis (1)
Eutrema salsugineum (1)
Daucus carota (1)
Panicum virgatum (1)
Cannabis sativa (1)
Fragaria vesca (1)
Prunus persica (1)
Manihot esculenta (1)
Eucalyptus grandis (1)
Populus trichocarpa (1)
Brachypodium distachyon (1)
Malus domestica (1)
Beta vulgaris (1)
Lotus japonicus (1)
Sorghum bicolor (1)
Setaria viridis (1)
Medicago truncatula (1)

Organisms

Theobroma cacao (58)
Cacao swollen shoot virus (1)
Hibiscus (1)
Stygiomarasmius scandens (1)
Moniliophthora roreri (1)
Theobroma umbraticum (1)
Marasmius crinis-equi (1)
Moniliophthora perniciosa (1)
leaf metagenome (1)
Limosilactobacillus fermentum (1)
Bacillus paramycoides (1)
Lactiplantibacillus plantarum (1)
Bacillus amyloliquefaciens (1)

Repository

ENA (114)
biostudies-arrayexpress (34)
geo (15)
MassIVE (8)
pride (6)
GNPS (5)
EVA (4)
ExpressionAtlas (3)
MetaboLights (3)

Tissue

Cotyledon (3)
Plant cell (3)
Fruit (1)
Seed (1)

Disease

Disease free (1)

Technology Type

Mass Spectrometry (6)
Shotgun proteomics (6)
Mass spectrometry (3)

Instrument Platform

LC-ESI-QTof-MS/MS (4)
Illumina HiSeq 2500 (3)
- (2)
Bruker micrOTOF-Q III (2)
Thermo Scientific QExactive Hybrid Quadrupole-Orbitrap Mass Spectrometer (2)
6545 Q-TOF LC/MS (2)
Desktop (1)
Bacteriological Laboratory (1)
Quantseq FWD kit (Lexogen, Austria) was used to prepare libraries for NGS. Reverse transcription of RNA, amplification of libraries, quality control of libraries and purification were performed exactly as described in manual provided with kit. (1)
RNAeasy kit (1)
Cell culture lab (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
Illumina NovaSeq 6000 (1)
MicrOTOF-Q II (1)
Amazon Speed ETD instrument (Bruker Daltonics, Bremen, Germany) with an electrospray ionization (ESI) source operating in negative mode. (1)
Xevo G2-XS QTof (1)
6550 Q-TOF LC-MS Agilent (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
MS Imaging - (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2014 (15)
2010 (9)
2019 (8)
2023 (5)
2015 (4)
2013 (4)
2011 (4)
2016 (3)
2026 (3)
2024 (3)
2018 (3)
2021 (3)
2022 (3)
2020 (3)
2025 (2)
2017 (1)
2012 (1)
2009 (1)
2005 (1)

CHEBI ID

CHEBI:143055 (1)
CHEBI:63427 (1)
CHEBI:32167 (1)
CHEBI:61778 (1)
CHEBI:59777 (1)
CHEBI:37814 (1)
CHEBI:143065 (1)
CHEBI:143048 (1)
CHEBI:143058 (1)
CHEBI:143050 (1)
CHEBI:143052 (1)
CHEBI:143046 (1)
CHEBI:143051 (1)
CHEBI:39434 (1)
CHEBI:50699 (1)
CHEBI:49193 (1)
CHEBI:15705 (1)
CHEBI:66730 (1)
CHEBI:67290 (1)
CHEBI:143061 (1)
CHEBI:25106 (1)
CHEBI:143044 (1)
CHEBI:143060 (1)
CHEBI:143040 (1)
CHEBI:143042 (1)
CHEBI:143066 (1)
CHEBI:143047 (1)
CHEBI:143037 (1)
CHEBI:38759 (1)
CHEBI:64340 (1)

Metabolite Name

Phosphonoacetic acid (1)
Dimethylsulfoniopropionic acid (1)
Aminomethylphosphonate (1)
Glycosyldiacylglycerols (1)
Sulfoquinovosyldiacylglycerols (1)
Triterpene saponins (1)
Ketals (1)
Peonidin 3-(4-sinapoylgentiobioside) (1)
Dialkylglycerophosphoethanolamines (1)
I(3)-Tocotrienol (1)
Sapimukoside J (1)
2,3-dihydroxypropyl icos-11-enoate (1)
17-(7-hydroxy-6-methylhept-5-en-2-yl)-4,4,10,13,14-pentamethyl-1,2,5,6,12,15,16,17-octahydrocyclopenta[a]phenanthren-3-one (1)
2,2,3-Trimethyltridecanoic acid (1)
2-[3,7-dimethyl-9-(2,6,6-trimethylcyclohexen-1-yl)nona-2,6-dienyl]benzene-1,4-diol (1)
[(12-Phenoxydodecyl)oxy]benzene (1)
(+)-12-methyl myristic acid (1)
Limonoids (1)
Macrolides (1)
(2E,4E,6E,8E,10E)-11-[(4R)-4-hydroxy-2,6,6-trimethylcyclohexen-1-yl]-5,9-dimethylundeca-2,4,6,8,10-pentaenal (1)
Diterpene lactones (1)
Dihydro-7-hydroxymyoporone (1)
Feruloylquinic acid-O-hexoside (1)
L-alpha-amino acids (1)
Perforamone B (1)
Azadiradionolide (1)
Naringenin-hexose I (1)
Lycoposerramine F (1)
UGA28 (1)
UGA11 (1)

First Public Date

2013 (20)
2024 (18)
2025 (15)
2023 (11)
2026 (10)
2021 (6)
2018 (6)
2022 (5)
2015 (5)
2014 (5)
2020 (4)
2019 (4)
2017 (3)
2016 (2)

Classification

viruses (1)

Study type

Transcription profiling by array (24)
RNA-seq of coding RNA (5)
Methylation profiling by array (2)
Unknown experiment type (1)
Comparative genomic hybridization by array (1)
RNA-seq of total RNA (1)

Release Date

2023 (31)
2022 (30)
2025 (26)
2021 (26)
2024 (24)
2014 (23)
2015 (18)
2018 (18)
2017 (18)
2020 (16)
2019 (10)
2013 (9)
2010 (9)
2016 (8)
2012 (6)
2011 (5)
2009 (5)
2008 (4)
2026 (3)
2006 (2)
2005 (1)
2003 (1)

Lab affiliation

Molecular Systems Biology Department of Ecogenomics and Systems Biology University of Vienna Austria (1)
Department of Chemistry, University of Reading, Whiteknights, Reading RG6 6AD, UK (1)
Walloon Agricultural Research Centre Département sciences du vivant Unité génie biologique Bâtiment Jean-Baptisite de La Quintinie Chaussée de Charleroi 235, 5030 Gemblous Belgium (1)
University of Reading (1)
Head of Mass Spectrometry and Proteomics, University of Reading (1)
Department of Biomedical Sciences, University of Padova, Italy (1)

Tags

pathogen:virus (1)
pathogen (1)

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Clovamide, a hydroxycinnamic acid amide, is a resistance factor against Phytophthora spp. in Theobroma cacao

The hydroxycinnamic acid amides (HCAAs) are a diverse group of plant specialized phenylpropanoid metabolites distributed widely in the plant kingdom and are known to be involved in tolerance to abiotic and biotic stress. The HCAA clovamide is reported in a small number of distantly related species. ...

2020-12-17 | MTBLS2154 | MetaboLights

Transcript profiling of the biotrophic interaction between Theobroma cacao and the fungal pathogen Moniliophthora perniciosa

RNA-seq to simultaneously inspect the transcriptomes of cacao and M. perniciosa during their biotrophic interaction. Five biological replicates of each condition (healthy seedlings and seedlings at 30 d after infection) were harvested for transcriptome sequencing using RNA-seq. For this experiment, ...

ORGANISM(S): Theobroma cacao

2014-02-12 | E-MTAB-5134 | biostudies-arrayexpress

Characterization of the proteome of Theobroma cacao beans by nanoUHPLC-ESI MS/MS

Cocoa seed storage proteins play an important role in flavour development as aroma precursors are formed from their degradation during fermentation. Major proteins in the beans of Theobroma cacao are the storage proteins belonging to the vicilin and albumin fraction. Although both these classes of p...

ORGANISM(S): Theobroma cacao (Cacao) (Cocoa)

2018-01-04 | PXD005586 | Pride