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TranscriptomicsA combinatorial Interplay Among the ACC Synthase Isoforms Regulates Ethylene Biosynthesis in Arabidopsis thaliana
ACC Synthase (ACS) is the key regulatory enzyme in the ethylene biosynthesis in plants. It catalyzes the conversion of s-adenosylmethionine (SAM) to 1-aminocyclopropane-1-carboxylic acid (ACC), the precursor of ethylene. Arabidopsis has nine ACS genes. The goal of the project is to inactivate each g...
ORGANISM(S): Arabidopsis thaliana 
2009-12-15 | E-GEOD-14496 | biostudies-arrayexpress
TranscriptomicsAuxin mediated gene expression in WT, arf7, arf19 and arf7 arf19 mutants
RNA samples were extracted from liquid cultured seedlings treated with or without auxin (5µM IAA) for 2 h. Lines used for this study: Columbia wild-type nph4-1(arf7) single mutant arf19-1 single mutant nph4-1 arf19-1 double mutant Treatment: Control (EtOH) Auxin treated (5µM IAA) Keywords = Auxi...
ORGANISM(S): Arabidopsis thaliana 
2010-06-09 | E-GEOD-627 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis auxin mediated gene expression in wild type and arf2-6 mutant
Global gene expression data from 7-day old light-grown liquid cultured seedlings treated with or without auxin (5µM IAA) for 2 h. Columbia (WT) and Auxin response factor 2 (ARF2) T-DNA insertion mutant (arf2-6 ) were used for this study. Each experimental condition has three true replicates for a t...
ORGANISM(S): Arabidopsis thaliana 
2008-06-14 | E-GEOD-631 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis seedlings treated with inhibitors of auxin transcriptional response identified using chemical genetics
Approximately 2.5 mg dry Col-0 seedlings were surface sterilized and stratified for 2 days at 4degreesC in liquid media containing 1.5% sucrose (w/v) before being transferred to light with constant shaking at 100 rpm on an orbital shaker. After 7 days, the seedling clusters were subjected to the tre...
ORGANISM(S): Arabidopsis thaliana 
2007-07-13 | E-GEOD-1491 | biostudies-arrayexpress
TranscriptomicsExpression of Intergenic Clusters
Contains a row for each intergenic cluster in each sample, indicating whether our analysis called the cluster "present" or "absent" in the sample. Intergenic clusters are novel (unannotated) genes detected by aligning Arabidopsis cDNAs/ESTs to the genome. Cluster coordinates refer to version 3 of th...
ORGANISM(S): Arabidopsis thaliana 
2010-06-05 | E-GEOD-638 | biostudies-arrayexpress
TranscriptomicsExpression in Intergenic Regions
Contains a row for each intergenic region in each sample, indicating whether our analysis called a window within the region "present" or "absent" in the sample. Intergenic regions are regions containing neither annotated genes nor intergenic clusters. Region coordinates refer to version 3 of the TIG...
ORGANISM(S): Arabidopsis thaliana 
2010-06-05 | E-GEOD-639 | biostudies-arrayexpress
TranscriptomicsExpression of Annotated Genes
Contains a row for each annotated gene in each sample, indicating whether our analysis called the gene "present" or "absent" in the sample. Gene names and coordinates refer to version 3 of the TIGR annotation as submitted to GenBank (GI numbers 22330780, 22326553, 22331929, 22329272, 22328163).
ORGANISM(S): Arabidopsis thaliana 
2010-06-05 | E-GEOD-636 | biostudies-arrayexpress
TranscriptomicsAntisense Expression of Annotated Genes
Contains a row for each annotated gene in each sample, indicating whether our analysis called the region antisense to the coding region of the gene "present" or "absent" in the sample. Gene names and coordinates refer to version 3 of the TIGR annotation as submitted to GenBank (GI numbers 22330780, ...
ORGANISM(S): Arabidopsis thaliana 
2010-06-05 | E-GEOD-637 | biostudies-arrayexpress
GenomicsArabidopsis thaliana
Auxin mediated gene expression in WT and arf2-6 mutant
PRJNA89755 | ENA
GenomicsArabidopsis thaliana
Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutants
PRJNA87535 | ENA
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