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ProteomicsThermococcus kodakarensis proteins expressed at various temperatures reveals changes in RNA modifications
Thermococcus kodakarensis is a thermophilic archaea used in this study to determine how changes in growth temperature affect protein expression. This organism was chosen, in part, due to the simplified proteome and potential protein stability gained when analyzing proteins at room temperature. Two t...
ORGANISM(S): Thermococcus kodakarensis KOD1 
2020-02-17 | PXD014814 | Pride
Proteomics Thermococcus kodakarensis Theromphile Qexactive plus 
GenomicsThermococcus kodakarensis strain:TS901
Thermococcus kodakarensis strain:TS901 Genome sequencing
PRJNA928457 | ENA
TranscriptomicsRNA-seq of DNA gyrase expressing Thermococcus kodakarensis
The study was designed to test the global impact of negative supercoiling on gene expression in model archaeon T. kodakarensis. Exogenous wild type GyrA or GyrAY119F and wild type GyrB from Thermotoga maritima was expressed under the constitutive PhmtB promoter in T. kodakarensis cells.
ORGANISM(S): Thermococcus kodakarensis 
2021-08-08 | E-MTAB-10799 | biostudies-arrayexpress
TranscriptomicsPrimary transcriptome map of the hyperthermophilic archaeon ThermococcusM-BM- kodakarensis
Background: Prokaryotes have relatively small genomes, densely-packed and apparently dominated by protein-encoding sequences. However, data now generated by high throughput RNA sequencing (RNA-seq) reveal surprisingly more-complex transcriptomes with many previously unrecognized and unanticipated ...
ORGANISM(S): Thermococcus kodakarensis KOD1 
2014-08-18 | E-GEOD-56262 | biostudies-arrayexpress
GenomicsThermococcus kodakarensis
Thermococcus kodakarensis bisulfite-sequenced RNA
PRJNA937301 | ENA
GenomicsThermococcus kodakarensis
Microarray analysis of the hyperthermophilic archaeon Thermococcus kodakarensis grown at lowest growth temperature
PRJNA292671 | ENA
GenomicsThermococcus kodakarensis
Microarray analysis of the deletion of transcription regulator SurR in the hyperthermophilic archaeon Thermococcus kodakarensis
PRJNA292662 | ENA
GenomicsThermococcus kodakarensis strain:RLV2
WGS conformation of TFS deletion in Thermococcus kodakarensis
PRJNA996631 | ENA
TranscriptomicsMicroarray analysis of the hyperthermophilic archaeon Thermococcus kodakarensis grown at lowest growth temperature
A hyperthermophilic archaeon Thermococcus kodakarensis can grow in a wide range of temperatures from 60°C to 93°C, optimally at 85°C. To screen the genes that being specifically expressed at lowest growth temperature, 60°C, we investigated the transcriptional profilings of T. kodakarensis grown ...
ORGANISM(S): Thermococcus kodakarensis 
2016-04-01 | E-GEOD-71987 | biostudies-arrayexpress
GenomicsThermococcus kodakarensis strain:KU216
RNA sequencing on Thermococcus kodakarensis KU216 and DBP1 mutant.
PRJDB7903 | ENA
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