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TranscriptomicsComplexity of Murine Cardiomyocyte miRNA Biogenesis, Sequence Variant Expression and Function
microRNAs (miRNAs) are critical to heart development and disease. Emerging research indicates that regulated precursor processing can give rise to an unexpected diversity of miRNA variants. We subjected small RNA from murine HL-1 cardiomyocyte cells to next generation sequencing to investigate the r...
ORGANISM(S): Mus musculus 
2012-07-20 | E-GEOD-39531 | biostudies-arrayexpress
TranscriptomicsPolysome purified mRNA in control and RACK1 silenced in human hepatocarcinoma cells
Fighting viral infections is hampered by the scarcity of viral targets and their variability resulting in development of resistance. Viruses depend on cellular molecules for their life cycle, which are attractive alternative targets, provided that they are dispensable for normal cell functions. Usin...
ORGANISM(S): Homo sapiens 
2015-05-14 | E-GEOD-60374 | biostudies-arrayexpress
TranscriptomicsDiagnostic microRNA profiling in cutaneous T-cell lymphoma (CTCL)
Cutaneous T-cell lymphomas (CTCL) are the most frequent primary skin lymphomas. Nevertheless, diagnosis of early disease has proven difficult due to a clinical and histological resemblance to benign inflammatory skin diseases. To address if microRNA (miRNA) profiling can discriminate CTCL from benig...
ORGANISM(S): Homo sapiens 
2011-11-22 | E-GEOD-31408 | biostudies-arrayexpress
TranscriptomicsExpression data from vehicle or PD-0332991 treated human T-ALL lines
Cyclin D3 is critical hematopoiesis and loss of cyclin D3 leads to resistance to transformation of bone marrow progenitors by Notch1-IC. We used a small molecule targeting cyclin D3:CDK4/6 activity to study whether its inhibition is an effective therapeutic strategy. We analyzed T-ALL lines in vitro...
ORGANISM(S): Homo sapiens 
2012-12-13 | E-GEOD-40635 | biostudies-arrayexpress
Genomicsena-DATASET-Genentech-22-08-2012-06:56:27:875-9 - samples
Whole genome sequencing of SCLC tumor/normal samples
EGAD00001000221 | EGA
GenomicsLung normal control - samples
SCLC matched normal genotypes
EGAD00010000278 | EGA
GenomicsSmall Cell Lung Carcinoma - samples
SCLC tumor genotypes
EGAD00010000276 | EGA
Genomicsena-DATASET-Genentech-22-08-2012-07:03:30:871-10 - samples
Exome capture sequencing of SCLC tumor/normal pairs and cell lines
EGAD00001000222 | EGA
Genomicsena-DATASET-Genentech-22-08-2012-07:05:26:504-11 - samples
RNA sequencing of SCLC tumor/normal sample pairs and cell lines
EGAD00001000223 | EGA
GenomicsGenentech Small Cell Lung Cancer (SCLC) Screen
Exome capture, RNA-Seq, whole genome sequencing of set of Small Cell Lung Cancer samples.
EGAS00001000334 | EGA
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