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TranscriptomicsTranscriptional comparison of the filamentous fungus Neurospora crassa growing on three major monosaccharides D-glucose, D-xylose and L-arabinose
D-glucose, D-xylose and L-arabinose are three major monosaccharides in the plant cell wall. Complete utilization of all three sugars is still a bottleneck for second-generation cellulolytic bioethanol production, especially for L-arabinose. However, little is known about the gene expression profiles...
ORGANISM(S): Neurospora crassa 
2014-03-17 | E-GEOD-51091 | biostudies-arrayexpress
TranscriptomicsA transcriptomic analysis of Neurospora crassa using five major crop residues and the novel role of the sporulation regulator rca-1 in lignocellulase production
Comparative transcriptional profiling of N. crassa grown on five major crop straws of China (barley, corn, rice, soybean and wheat straws) revealed a highly overlapping group of 430 genes, the Biomass commonly Induced Core Set (BICS). A large proportion of induced carbohydrate-active-enzyme (CAZy) g...
ORGANISM(S): Neurospora crassa OR74A 
2015-01-21 | E-GEOD-60986 | biostudies-arrayexpress
TranscriptomicsDeciphering regulatory mechanisms associated with hemicellulose degradation in Neurospora crassa
Hemicellulose, the second most abundant plant biomass fraction after cellulose, is widely viewed as a potential feedstock for the production of liquid fuels and other value-added materials. Degradation of hemicellulose by filamentous fungi requires production of many different enzymes, which are ind...
ORGANISM(S): Neurospora crassa 
2012-03-26 | E-GEOD-34098 | biostudies-arrayexpress
TranscriptomicsThe transcriptome landscape of Prochlorococcus MED4 and the factors for stabilizing the core genome
RNA-Seq technique was used to obtain the transcriptome map of Prochlorococcus MED4, including operons, untranslated regions, non-coding RNAs, and novel genes. Genome-wide expression profiles revealed that three factors contribute to core genome stabilization. First, a negative correlation between ge...
ORGANISM(S): Prochlorococcus marinus subsp. pastoris str. CCMP1986 
2014-02-27 | E-GEOD-49517 | biostudies-arrayexpress
ProteomicsAspergillus niger O1 strain and alpha-glucosidase knockout mutants proteomic data
To explore the changes of secreted proteins in fermentation process, filtered supernatants were analyzed using liquid chromatography combined with tandem mass spectrometry (LC-MS/MS). Label-free quantitative proteomics approach was used to study the enzyme profile in the fermentation cultures.
ORGANISM(S): Aspergillus niger (strain CBS 513.88 / FGSC A1513) 
2022-10-04 | PXD036777 | Pride
An eksigent nano lc coupled to triple-tof 5600 mass spectrometer Aspergillus niger 
TranscriptomicsThe role of photoreceptors in the light modulated cellulase gene expression in Neurospora crassa
Light represents an important environmental cue, which exerts considerable influence on the metabolism of fungi. Studies with the biotechnological fungal workhorse Trichoderma reesei (Hypocrea jecorina) have revealed an interconnection between transcriptional regulation of cellulolytic enyzmes and t...
ORGANISM(S): Neurospora crassa 
2011-10-11 | E-GEOD-32871 | biostudies-arrayexpress
TranscriptomicsThe putative cellodextrin transporter-like protein CLP1 is involved in cellulase induction in Neurospora crassa
Neurospora crassa recently has become a novel system to investigate cellulase induction. Here, we discovered a novel membrane protein, CLP1 (NCU05853), a putative cellodextrin transporter-like protein, that is a critical component of the cellulase induction pathway in N. crassa. Although CLP1 protei...
ORGANISM(S): Neurospora crassa OR74A 
2014-11-13 | E-GEOD-60004 | biostudies-arrayexpress
GenomicsProduction of 14α-hydroxysteroids by a recombinant Saccharomyces cerevisiae biocatalyst expressing fungal steroid 14α-hydroxylation system
Production of 14α-hydroxysteroids by a recombinant Saccharomyces cerevisiae biocatalyst expressing fungal steroid 14α-hydroxylation system
PRJNA528954 | ENA
TranscriptomicsEvidence of a critical role for cellodextrin transporter 2 (CDT-2) in both cellulose and hemicellulose degradation and utilization in Neurospora crassa
CDT-1 and CDT-2 are two cellodextrin transporters discovered in the filamentous fungus Neurospora crassa. Previous studies focused on characterizing the role of these transporters in only a few conditions, including cellulose degradation, and the function of these two transporters is not yet complet...
ORGANISM(S): Neurospora crassa 
2014-09-25 | E-GEOD-44673 | biostudies-arrayexpress
GenomicsEscherichia coli ATCC 8739
A novel point mutation in RpoB improves osmotolerance and succinic acid production in Escherichia coli
PRJNA331108 | ENA
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