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Total RNA hybridizations of Halobacterium salinarum NRC-1 total RNA versus a strain overexpressing TFBd were compared to verify the transcriptome landscape changes. Comparison with TFBd binding sites localized using ChIP-chip data and MeDiChI algorithm (Reiss et al, 2008) allowed observation that TF...
ORGANISM(S): Halobacterium sp. NRC-1 
Halobacterium salinarum NRC-1 was grown in CM media, at 37oC in a waterbath with agitation of 125 rpm under constant light. Analysis of transcriptional changes during growth, in addition to mapping of transcriptome structure under the same conditions, provided interesting insights about regulatory l...
ORGANISM(S): Halobacterium sp. NRC-1 
This SuperSeries is composed of the following subset Series: GSE12923: Halobacterium salinarum NRC-1 growth curve, tiling arrays. GSE12977: Halobacterium salinarum NRC-1 growth curve GSE13108: Halobacterium salinarum NRC-1 conditional ChIP-chip for transcription initiation factor IIB 4 (TFBd) GSE704...
ORGANISM(S): Halobacterium sp. NRC-1 
Conditional ChIP-chip for TFBd at different growth stages. cmyc-tagged TFBd was immunoprecipitated at different growth stages (early log, stationary and late stationary phases) and hybridized to microarrays.
ORGANISM(S): Halobacterium sp. NRC-1 
A detailed map of genomic locations where TFs bind DNA and modulate transcription is essential to model mechanisms of gene regulation on a systems-scale. Chromatin immunoprecipitation of transcription complexes coupled to microarray (ChIP-chip (Ren et al, 2000)) or sequencing (ChIP-seq (Robertson et...
ORGANISM(S): Halobacterium sp. NRC-1 
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