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TranscriptomicsAnalysis of nucleosome occupancy in yeast using a whole genome tiling array
Nucleosomal DNA and whole genomic DNA from Saccharomyces cerevisiae BY4741 were isolated and hybridized to the yeast whole genome tiling array. Cells were grown in rich medium (YPD) to mid-log phase.
ORGANISM(S): Saccharomyces cerevisiae 
2007-09-16 | E-MEXP-1172 | biostudies-arrayexpress
TranscriptomicsDIP-chip from Cbf1, Leu3, Pho2, Pho4, Rap1, Rox1, and Swi5
DNA Immunoprecipitation was performed using purified, naked, genomic DNA and purified recombinant DNA binding domains for S. cerevisiae transcription factors (Cbf1, Leu3, Pho2, Pho4, Rap1, Rox1, and Swi5) and then competitively hybridized against input DNA on NimbleGen 385k whole-genome, 32bp, tilin...
ORGANISM(S): Saccharomyces cerevisiae 
2010-05-15 | E-GEOD-13751 | biostudies-arrayexpress
TranscriptomicsA library of yeast transcription factor motifs
The sequence specificity of DNA-binding proteins is the primary mechanism by which the cell recognizes genomic features. Here, we describe systematic determination of yeast transcription factor DNA-binding specificities. We obtained binding specificities for 112 DNA-binding proteins representing 19 ...
ORGANISM(S): Saccharomyces cerevisiae 
2008-12-26 | E-GEOD-12349 | biostudies-arrayexpress
UnknownAlterations in chromatin organization promote totipotent-like features in a DPPA2/DUX-dependent manner
Not available
S-SCDT-10_1038-S44318-026-00853-6 | biostudies-other
TranscriptomicsNucleosome maps of the human cytomegalovirus genome reveal a temporal switch in chromatin organization linked to a major IE protein
Human CMV (hCMV) establishes lifelong infections in most of us, causing developmental defects in human embryos and life-threatening disease in immunocompromised individuals. During productive infection, the viral >230,000-bp dsDNA genome is expressed widely and in a temporal cascade. The hCMV genome...
ORGANISM(S): Human Herpesvirus 5 
2013-07-17 | E-GEOD-48875 | biostudies-arrayexpress
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