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TranscriptomicsTranscriptomic analysis of C. jejuni HPC5 with C. jejuni HPC5 R14, R20, R14A, R14B, R20A, R20B and R20C.
C. jejuni HPC5 is a Campylobacter strain isolated from chickens. Following bacteriophage CP34 treatment on chickens colonised by C. jejuni HPC5, a series of CP34 insensitive strains like C. jejuni HPC5 R14 and C. jejuni HPC5 R20 were obtained which compromised their ability to colonise chickens. Rei...
ORGANISM(S): Campylobacter jejuni 
2015-09-15 | E-GEOD-17799 | biostudies-arrayexpress
TranscriptomicsTranscriptomic analysis of C. jejuni grown in anaerobic jar with air mix and in Modular Atmospheric Controlled System
Transcriptomic analysis of C. jejuni HPC5 grown in anaerobic jar supplemented with air mix and in Modular Atmospheric Controlled System (MAC). C. jejuni HPC5 is a Campylobacter strain isolated from broiler chickens. Majority of the Campylobacter strains are cultured in an atmosphere containing 5-10%...
ORGANISM(S): Campylobacter jejuni 
2011-04-01 | E-GEOD-17801 | biostudies-arrayexpress
GenomicsA Cancer Cell-Line Titration Series for Evaluating Somatic Classification
Accurate detection of somatic single nucleotide variants and small insertions and deletions from DNA sequencing experiments of tumour-normal pairs is a challenging task. Tumour samples are often contaminated with normal cells confounding the available evidence for the somatic variants. Furthermore...
EGAS00001001016 | EGA
TranscriptomicsGenome analysis of C. jejuni and C. coli isolated from different regions of the same pig
C. coli is the predominant Campylobacter strain that is found in pigs while C. jejuni if present will be 10- 100 folds less. Natural transformation can occur if there is a coexistence of both the strains in the intestine of pigs. Genome analyses were performed on a C. jejuni strain U101 isolated fro...
ORGANISM(S): Campylobacter jejuni 
2015-09-15 | E-GEOD-17701 | biostudies-arrayexpress
TranscriptomicsGenome analysis of C. jejuni and C. coli isolated from different regions of the same chicken
The gut of chicken is mostly colonised with Campylobacter jejuni and with 100 fold less C. coli. The competitive ability of C. coli OR12 over C. jejuni OR1 has been examined in experimental broiler chickens following the observation that C. coli replaced an established C. jejuni intestinal colonisat...
ORGANISM(S): Campylobacter jejuni 
2015-09-15 | E-GEOD-17805 | biostudies-arrayexpress
GenomicsCell-line Mixing Experiment Verification Data - samples
Description not provided
EGAD00001001044 | EGA
GenomicsCell-line Mixing Experiment Sequencing Data - samples
Description not provided
EGAD00001001043 | EGA
GenomicsCPC-GENE Prostate Cancer Heterogeneity Study
Herein we describe a molecular portrait of potentially curable, Gleason 7 and intermediate risk prostate cancer based on genome-wide CNV profiles of 96 patients, and subsequent whole-genome sequencing of 28 tumours from 10 patients, using DNA quantities that are achievable in diagnostic biopsies (50...
EGAS00001000549 | EGA
GenomicsCPCG_Het_Study - samples
Aligned Sequence (bam format), Duplicates removed
EGAD00001001329 | EGA
GenomicsCPCG Het Study, Raw Fastq Sequence - samples
Raw sequence data, fastq format
EGAD00001002885 | EGA
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