Tmp - OmicsDI

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Technology Type

Mass Spectrometry (34)
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Mass spectrometry (10)
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Data-independent acquisition (3)
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SWATH MS (2)
Unspecified (1)
MSE (1)
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Proteogenomics (1)
SRM/MRM (1)

Instrument Platform

NextSeq 500 (6)
Q Exactive (6)
Illumina HiSeq 2000 (5)
Illumina NovaSeq 6000 (4)
Illumina HiSeq 4000 (4)
Liquid Chromatography MS - negative - hilic (4)
Illumina HiSeq 2500 (3)
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Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)

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2004 (1)

UNIPROT ID/AC

10090.ENSMUSP00000072775 (2)
10090.ENSMUSP00000079944 (2)
10090.ENSMUSP00000105709 (2)
10090.ENSMUSP00000117461 (2)
10090.ENSMUSP00000127198 (2)
10090.ENSMUSP00000132065 (2)
10090.ENSMUSP00000132102 (2)
10090.ENSMUSP00000136357 (2)
10090.ENSMUSP00000136375 (2)
10090.ENSMUSP00000136544 (2)
10090.ENSMUSP00000137171 (2)
10090.ENSMUSP00000137236 (2)
1433B_MOUSE (2)
1433E_MOUSE (2)
1433Z_MOUSE (2)
2AAA_MOUSE (2)
3BHS1_MOUSE (2)
3HIDH_MOUSE (2)
4F2_MOUSE (2)
6PGD_MOUSE (2)
6PGL_MOUSE (2)
A0A087WQ89_MOUSE (2)
A0A140T8T4_MOUSE (2)
A0A1W2P6N8_MOUSE (2)
AACS_MOUSE (2)
AAK1_MOUSE (2)
AATC_MOUSE (2)
ABCA5_MOUSE (2)
ABHEB_MOUSE (2)
ACAD9_MOUSE (2)

CHEBI ID

CHEBI:9256 (3)
CHEBI:26754 (3)
CHEBI:15107 (3)
CHEBI:8973 (3)
CHEBI:11889 (3)
CHEBI:11888 (3)
CHEBI:1664 (3)
CHEBI:21271 (3)
CHEBI:41721 (3)
CHEBI:41618 (3)
CHEBI:58072 (3)
CHEBI:3282 (3)
CHEBI:41526 (3)
CHEBI:13281 (3)
CHEBI:23013 (3)
CHEBI:1785 (3)
CHEBI:11960 (3)
CHEBI:20316 (3)
CHEBI:24185 (3)
CHEBI:10570 (3)
CHEBI:24194 (3)
CHEBI:12404 (3)
CHEBI:17971 (3)
CHEBI:10566 (3)
CHEBI:39975 (3)
CHEBI:12400 (3)
CHEBI:21312 (3)
CHEBI:13108 (3)
CHEBI:6230 (3)
CHEBI:13113 (3)

Metabolite Name

TMP (12)
AMP (11)
UMP (9)
7-methylguanine (8)
CMP (8)
N-acetylserine (8)
N-acetylhistidine (7)
2'-deoxycytidine (7)
FAD (7)
Glycine (7)
N-acetylglutamine (7)
Xanthine (7)
Guanosine (7)
Hypoxanthine (7)
Valylglycine (6)
Phenylalanylglycine (6)
Isoleucylglycine (6)
Methylphosphate (6)
Gulonate* (6)
5,6-dihydrouridine (6)
Glycylleucine (6)
Glutamate, gamma-methyl ester (6)
Glycylvaline (6)
2'-deoxyadenosine 5'-monophosphate (6)
2'-deoxyinosine (6)
2'-deoxyguanosine (6)
2'-deoxyadenosine (6)
Sulfate* (6)
Methionine sulfone (6)
Erythronate* (6)

First Public Date

2025 (15)
2026 (12)
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2014 (9)
2022 (7)
2023 (5)
2021 (4)
2020 (4)
2017 (4)
2018 (3)
2019 (2)
2015 (2)
2016 (1)

Modelling Approach

Constraint-based model (3)

Lab affiliation

Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece (3)
Key Laboratory of Modern Toxicology of Shenzhen, Shenzhen Center for Disease Control and Prevention, No. 8, Longyuan Road, Nanshan District, Shenzhen, China 518055. (2)
University of Missouri-Columbia (2)
ANU, RSB (1)
Department of Infection, Immunity and Inflammation, University of Leicester, Leicester, LE1 9HN (1)
Department of Medicine, University of Cape Town & Groote Schuur Hospital, Cape Town, South Africa (1)
Department of Microbiology Icahn School of Medicine at Mount Sinai (1)
Department of Microbiology at NYU Grossman School of Medicine. (1)
Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA, 94720, USA (1)
Department of Radiology Perelman School of Medicine at the University of Pennsylvania (1)
Departments of Chemistry, Biological Sciences, Microbiology and Immunology, Vanderbilt University (1)
Division of Cell Matrix Biology & Regenerative Medicine and KNH Centre for Biomedical Egyptology Faculty of Biology, Medicine and Health University of Manchester United Kingdom (1)
Food Science Research Institue (CIAL, CSIC-UAM) (1)
Institute of Biochemistry II, Goethe University Frankfurt - Medical Faculty, University Hospital, Frankfurt am Main, Germany and Fraunhofer Institute for Molecular Biology and Applied Ecology IME, Project Group Translational Medicine and Pharmacology TMP, Theodor-Stern-Kai 7, 60590 Frankfurt am Main, Germany. (1)
Institute of Biochemistry and Molecular Biology, University of Bonn, Germany (1)
Institute of Biotechnology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, 100000, Vietnam (1)
Institute of Molecular Biology (IMB), 55128 Mainz, Germany; Institute of Developmental Biology and Neurobiology (IDN), Johannes Gutenberg University, 55128 Mainz, Germany (1)
Institute of Molecular Biology gGmbH (IMB) (1)
RECAMO, Masaryk Memorial Cancer Institute Zluty Kopec, Brno, Czech Republic (1)

IsPrivate

False (3)

Submitter Keywords

FROG (1)
Not Peer Reviewed (1)

Classification

bacteria (6)
protozoa (1)

Study type

Transcription profiling by array (90)
RNA-seq of coding RNA (31)
ChIP-seq (23)
RNA-seq of coding RNA from single cells (7)
ChIP-chip by tiling array (6)
Unknown experiment type (5)
Comparative genomic hybridization by array (4)
RNA-seq of non coding RNA (4)
ATAC-seq (2)
MicroRNA profiling by array (2)
Methylation profiling by array (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by SAGE (1)
Cell line - One-color microarray (1)
Animal - High-throughput sequencing (1)
RNAi profiling by array (1)
Transcription profiling by RT-PCR (1)
RIP-seq (1)
Proteomic profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2022 (113)
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2024 (76)
2019 (56)
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2018 (54)
2015 (51)
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2014 (39)
2013 (35)
2011 (32)
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2012 (23)
2009 (18)
2008 (16)
2007 (13)
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2005 (3)
2004 (2)
2003 (1)
2002 (1)
2001 (1)
1999 (1)

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Gene expression profiling of trimethoprim resistant Escherichia coli

Global alterations in trimethoprim (TMP) resistant E. coli are unknown. TMP resistant E. coli have been developed in the laboratory over a period of 48 hours by step-wise increase in TMP concentration and gene expression profiles have been obtained to identify genome wide perturbations in trimethopr...

ORGANISM(S): Escherichia coli str. K-12 substr. MG1655

2019-09-24 | E-MTAB-6536 | biostudies-arrayexpress

T cell microvilli constitute immunological synaptosomes that carry messages to antigen-presenting cells

Lists of proteins that were commonly detected in total, membrane, TMP, and vesicles.

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2018-08-15 | MSV000082822 | MassIVE

Topo mutants psoralen photobinding

We present a DNA array-based method for the genome-wide analysis of Psoralen photobinding in Saccharomyces cerevisiae cells. PB was found reduced in subtelomeric regions and increased in the subset of genes with smallest nucleosomal density. The analysis includes 3 repeats of the wild type strain (J...

ORGANISM(S): Saccharomyces cerevisiae

2010-06-24 | E-GEOD-16758 | biostudies-arrayexpress

Second-generation covalent TMP-tag for live cell imaging.

Not available

S-EPMC3433398 | biostudies-literature

Developing a hetero-alkali-metal chemistry of 2,2,6,6-tetramethylpiperidide (TMP): stoichiometric and structural diversity within a series of lithium/sodium, lithium/potassium and sodium/potassium TMP compounds.

Not available

S-EPMC3761191 | biostudies-literature

Tetramethylpyrazine improves cognitive impairment and modifies the hippocampal proteome in two mouse models of Alzheimer's disease

Alzheimer's disease (AD) is one of the most common neurodegenerative diseases. So far, there is no effective treatment for this condition. Tetramethylpyrazine (TMP) is an alkaloid extracted from traditional Chinese medicine chuanxiong, which is mainly used in the treatment of ischemic stroke some re...

ORGANISM(S): Mus musculus (Mouse)

2021-09-09 | PXD022840 | Pride

Tetramethylpyrazine improves cognitive impairment and modifies the hippocampal proteome in two mouse models of Alzheimer's disease

ORGANISM(S): Mus musculus (Mouse)

2021-09-09 | PXD022862 | Pride

Tetramethylpyrazine alzheimer’s disease (ad) proteomics mitochondria oxphos

An in vivo covalent TMP-tag based on proximity-induced reactivity.

Not available

S-EPMC2796251 | biostudies-literature

A fluorogenic TMP-tag for high signal-to-background intracellular live cell imaging.

Not available

S-EPMC3800097 | biostudies-literature

Dataset on synthesis and crystallographic structure of phenyl(TMP)iodonium(III) acetate.

Not available

S-EPMC6562192 | biostudies-literature

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