Tmt-based proteomics

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Proteomics (2451)
Unknown (392)
Genomics (17)
Transcriptomics (5)
Metabolomics (5)
Other (2)
Multiomics (2)

Organisms

Homo sapiens (94)
Mus musculus (52)
Rattus norvegicus (11)
Gallus gallus (6)
Rattus rattus (5)
Staphylococcus aureus (4)
Sus scrofa domesticus (4)
Bos taurus (3)
Oryctolagus cuniculus (3)
Solanum lycopersicum (3)
Apostichopus japonicus (2)
Brassica napus (2)
Capra hircus (2)
Danio rerio (2)
Oryza sativa (2)
Ovis aries (2)
Alkalicoccus halolimnae (1)
Bacillus pumilus (1)
Citrus sinensis x Citrus trifoliata (1)
Fusarium oxysporum f. sp. radicis-lycopersici 26381 (1)
Ganoderma lingzhi (1)
Haloxylon ammodendron (1)
Haloxylon persicum (1)
Isatis tinctoria (1)
Mus (1)
Mus sp. (1)
Mycolicibacterium smegmatis MC2 51 (1)
Sedum plumbizincicola (1)
Sinohyriopsis cumingii (1)
Triticum aestivum/Septoria tritici mixed cDNA library (1)

Organisms

Homo sapiens (5)
Mus musculus (2)
Sus scrofa (1)

Repository

pride (2116)
iProX (205)
MassIVE (88)
jPOST (26)
ENA (12)
PeptideAtlas (10)
geo (7)
PAXDB (6)
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EGA (2)
biostudies-arrayexpress (1)
GNPS (1)
GPMDB (1)
PanoramaPublic (1)

Tissue

Cell culture (572)
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Blood (48)
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Blood cell (40)
T cell (39)
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Whole body (26)
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Disease

Breast cancer (56)
Disease free (50)
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Lung cancer (9)
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Neuroblastoma (8)
Non-small cell lung carcinoma (8)
Melanoma (7)
Obesity (7)
Glioblastoma (6)
Human immunodeficiency virus infectious disease (6)
Malaria (5)
Pancreatic cancer (5)
Not Available (1)

Technology Type

Mass Spectrometry (2116)
Shotgun proteomics (1488)
Bottom-up proteomics (402)
Data-dependent acquisition (282)
Affinity purification coupled with mass spectrometry proteomics (88)
Top-down proteomics (68)
Gel-based experiment (26)
SRM/MRM (20)
SWATH MS (18)
Data-independent acquisition (16)
Mass spectrometry (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Mass spectrometry imaging (4)
Proteogenomics (4)
Affinity proteomics (3)
All-ion fragmentation (2)
DiaPASEF (2)
MSE (2)
Metaproteomics (2)
Glycoproteomics (1)

Instrument Platform

Orbitrap Fusion Lumos (23)
Orbitrap Fusion (16)
Q Exactive (12)
Orbitrap Eclipse (10)
QExactive (10)
Q Exactive Plus (7)
LTQ Orbitrap Velos (6)
LTQ Orbitrap Elite (5)
Q Exactive HF-X (3)
Liquid Chromatography MS - positive - reverse phase (3)
Liquid Chromatography MS - negative - reverse phase (3)
Orbitrap Exploris 480 (2)
Q-Exactive HF-X (Thermo Fisher) (2)
Illumina HiSeq 2500 (1)
Instrument (1)
Dionex UltiMate 3000 HPLC (Thermo Scientific instrument model) (1)
EASY-Spray C18 column (1)
Fusion Lumos Tribrid (1)
Orbitrap Ascend (1)
Orbitrap Astral (1)
Orbitrap Astral Zoom (1)
Q Exactive HF (1)
Q-Exactive Plus (1)
QExactive HFX (1)
TimsTOF HT (1)
TimsTOF Pro (1)
Liquid Chromatography MS - alternating - hilic (1)

Publication Date

2022 (353)
2025 (344)
2023 (337)
2021 (307)
2024 (266)
2020 (218)
2026 (189)
2019 (144)
2018 (122)
2017 (37)
2015 (29)
2016 (22)
2014 (4)
2013 (2)
2012 (1)

UNIPROT ID/AC

1433A_SOYBN (2)
1433B_HUMAN (2)
1433B_SOYBN (2)
1433C_SOYBN (2)
1433D_SOYBN (2)
1433F_HUMAN (2)
1433G_HUMAN (2)
1433S_HUMAN (2)
1433T_HUMAN (2)
1433Z_HUMAN (2)
2A5A_HUMAN (2)
2A5B_HUMAN (2)
2A5D_HUMAN (2)
2A5E_HUMAN (2)
2A5G_HUMAN (2)
2AAA_HUMAN (2)
2AAB_HUMAN (2)
2ABA_HUMAN (2)
2ABB_HUMAN (2)
2ABD_HUMAN (2)
2ABG_HUMAN (2)
2SS_SOYBN (2)
3847.GLYMA0042S100.1 (2)
3847.GLYMA0070S50.1 (2)
3847.GLYMA01G05321.1 (2)
3847.GLYMA01G05765.1 (2)
3847.GLYMA01G09540.1 (2)
3847.GLYMA01G09640.1 (2)
3847.GLYMA01G14160.1 (2)
3847.GLYMA01G22140.1 (2)

ENSEMBL ID

ENSG00000170477 (10)
ENSG00000229353 (10)

CHEBI ID

CHEBI:18237 (2)
CHEBI:16811 (2)
CHEBI:28300 (2)
CHEBI:18292 (1)
CHEBI:20392 (1)
CHEBI:17822 (1)
CHEBI:26271 (1)
CHEBI:25094 (1)
CHEBI:22653 (1)
CHEBI:27570 (1)
CHEBI:18186 (1)
CHEBI:26986 (1)
CHEBI:16708 (1)
CHEBI:506227 (1)
CHEBI:24898 (1)
CHEBI:30838 (1)
CHEBI:28044 (1)
CHEBI:17015 (1)
CHEBI:17310 (1)
CHEBI:17620 (1)
CHEBI:18176 (1)
CHEBI:27266 (1)
CHEBI:17750 (1)
CHEBI:73024 (1)
CHEBI:17947 (1)
CHEBI:18183 (1)
CHEBI:29016 (1)
CHEBI:30744 (1)
CHEBI:16347 (1)
CHEBI:15354 (1)

Metabolite Name

Betaine (2)
Methionine (2)
Choline (2)
Adenine (2)
L-Carnitine (2)
7-Beta-Hydroxylathyrol (1)
PAF (1)
Heliocurassavicine N-Oxyde (1)
22A-Acetoxy-3-Stictanone (1)
Dl-Norleucine (1)
Desmethylenylnocardamine (1)
8-Oxoerythraline Epoxide (1)
1-Cyclohexyl-1-Phenyl-3-Piperidin-1-Ylpropan-1-Ol (1)
Dehydrolucidenic Acid A (1)
13-Oxyingenol Dodecanoat (1)
Sphinganine Related Molecules (1)
3-Amino-1H-Quinazoline-2,4-Dione (1)
3-[(Z)-Heptadec-10-Enyl]Benzene-1,2-Diol (1)
Deoxysappanone B 7,4'-Dimethyl Ether (1)
Cearoin (1)
Alpha-Hydroxydeoxycholic Acid (1)
(2E,4E)-N-(2-Methylpropyl)Dodeca-2,4-Dienamide (1)
Phenylethylamide (1)
5-Chloroindole-2-Carboxylic Acid (1)
2,3-Dideoxycytidine (1)
2-Acetoxy-4-Pentadecylbenzoic Acid (1)
8'-Apozeaxanthinal (1)
Kaempferol 3-O-Gentiobioside (1)
2-(7-Hydroxy-6-Methyloctyl)-2H-Furan-5-One (1)
2-Mercaptobenzimidazole (1)

First Public Date

2023 (5)
2026 (3)
2025 (2)
2024 (1)
2021 (1)

Modification

2x(15)N labeled L-lysine (2)
4-tetrahydrothiazine-3-carboxylic acid (2)
Not available (2)
N6 (1)

Study type

RNA-seq of coding RNA (1)

Release Date

2022 (77)
2023 (62)
2021 (49)
2024 (41)
2025 (40)
2020 (36)
2019 (27)
2018 (21)
2017 (9)
2015 (9)
2026 (8)
2016 (8)
2013 (2)
2012 (2)
2014 (1)
2010 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (73)
Harvard Medical School (14)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (12)
The Institute of Cancer Research (12)
Cellzome (11)
Associate Member Developmental Neurobiology St. Jude Children's Research Hospital (10)
Associate Member, St. Jude Faculty Developmental Neurobiology St. Jude Children's Research Hospital Memphis, TN-38105 (10)
Helmholtz-Centre for Environmental Research - UFZ (10)
Cambridge Institute for Medical Research, University of Cambridge (8)
Department of Cell Biology, Harvard Medical School (8)
Functional Proteomics, ICR (8)
CRUK Scotland Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (7)
Department of Cell Biology, Harvard Medical School, Boston MA 02115 USA (7)
Institute of Biochemistry II, Faculty of Medicine, Goethe University, Frankfurt am Main, Germany Frankfurt Cancer Institute, Frankfurt am Main, Germany Cardio-Pulmonary Institute, Frankfurt am Main, Germany (7)
Institute of Cancer Research, London (7)
Karolinska Institutet, Stockholm, Sweden (7)
USDA-ARS (7)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (6)
Cornell University (6)
Medical University of Vienna (6)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (6)
The Institute of Cancer Research, London (6)
The University of Melbourne (6)
Wellcome Trust Sanger Institute (6)
Department of Cell Biology, Harvard Medical School, Boston MA, USA (5)
Department of Cell Biology, Harvard Medical School, Boston, MA 02115 USA (5)
Finley and Gygi lab Cell Biology Department Harvard Medical School US (5)
Molecular Genetics, RPTU Kaiserslautern (5)
National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (5)
St. Jude Children's Research Hospital (5)

Tags

xref:PubMed:41077125 (2)
xref:PubMed:35181733 (1)
xref:PubMed:38942927 (1)
xref:PubMed:41827658 (1)

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Integrated Proteomics and Metabolomics Analyses Revealed Potential Phospholipid-Related Biomarkers in Rabbit Atherosclerotic Plaques

BACKGROUND AND AIMS: Atherosclerosis, characterized by dysfunction of lipid metabolism and chronic inflammation, is considered as a metabolic disorder as well as a major contributor to cardiovascular diseases. However, metabolic signatures of atherosclerosis have not been well ex...

2024-09-26 | MTBLS9737 | MetaboLights

TMT-based Multiplexed (Chemo)proteomics on the Orbitrap Astral Mass Spectrometer

This dataset contains an evaluation of TMT-based multiplexed proteomics on the Orbitrap Astral mass spectrometer.

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2024-12-17 | MSV000096674 | MassIVE

TMT-Based Plasma Proteomics Reveals Dyslipidemia Among Lowlanders During Prolonged Stay at High Altitudes.

Not available

S-EPMC8554329 | biostudies-literature

Serum proteome profiling in canine chronic valve disease using TMT-based quantitative proteomics

Cardiovascular-related disorders (CVD) account for the highest mortality rates in the world, and affect the quality and the quantity of life of patients, creating an economic burden of prolonged therapeutic intervention. The aim of this study was to evaluate the serum protein profile of healthy and ...

ORGANISM(S): Canis familiaris (Dog) (Canis lupus familiaris)

2020-05-26 | PXD017129 | Pride

TMT-based plasma proteomics in humans at high altitude

In the present study, TMT-based proteomics studies was performed to decipher plasma proteome alterations in humans exposed to high altitude for short- (7 days, HA-D7) and long-term (3 months, HA-D150) stay.

ORGANISM(S): Homo sapiens (Human)

2022-02-15 | PXD028070 | Pride

Human Plasma Tmt lc-ms/ms

TMT-Based Proteomics Analysis Revealed the Protein Changes in Perirenal Fat from Obese Rabbits.

Not available

S-EPMC10743514 | biostudies-literature

TMT-Based Proteomics Reveal the Mechanism of Action of Amygdalin against Rheumatoid Arthritis in a Rat Model through Regulation of Complement and Coagulation Cascades.

Not available

S-EPMC10609517 | biostudies-literature

TMT-based quantitative proteomics reveals the genetic mechanisms of secondary hair follicle development in fine-wool sheep.

Not available

S-EPMC11801579 | biostudies-literature