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Proteomics
(1941)
Unknown
(558)
Genomics
(38)
Transcriptomics
(8)
Metabolomics
(8)
Other
(2)
Multiomics
(1)
Organisms
Homo sapiens
(81)
Mus musculus
(46)
Rattus norvegicus
(12)
Rattus rattus
(7)
Bos taurus
(6)
Gallus gallus
(5)
Sus scrofa domesticus
(3)
Oryza sativa
(3)
Staphylococcus aureus
(3)
Bambusa pervariabilis
(2)
Bambusa grandis
(2)
Capra hircus
(2)
Solanum lycopersicum
(2)
Oryctolagus cuniculus
(2)
Ovis aries
(2)
Gossypium hirsutum
(2)
108887
(1)
Dendrobium nobile
(1)
Suid alphaherpesvirus 1
(1)
Meretrix petechialis
(1)
Rhipicephalus haemaphysaloides
(1)
Mycobacteroides abscessus ATCC 19977
(1)
Saccharum officinarum
(1)
Natranaerobius thermophilus JW/NM-WN-LF
(1)
unclassified Proteininae
(1)
Bacillus pumilus
(1)
Edwardsiella tarda
(1)
Chenopodium quinoa
(1)
Fusobacterium vincentii
(1)
1804623
(1)
Organisms
Mus musculus
(6)
Homo sapiens
(5)
Rattus norvegicus
(2)
Escherichia coli str. K-12 substr. MG1655
(1)
Oreochromis niloticus
(1)
Sus scrofa
(1)
Arabidopsis thaliana
(1)
Repository
pride
(1626)
iProX
(183)
MassIVE
(101)
ENA
(29)
jPOST
(24)
geo
(13)
MetaboLights
(6)
EGA
(5)
PAXDB
(5)
GNPS
(2)
LINCS
(2)
biostudies-arrayexpress
(1)
GPMDB
(1)
NODE
(1)
Tissue
Cell culture
(360)
Brain
(126)
Epithelial cell
(123)
Liver
(78)
Lung
(52)
Permanent cell line cell
(52)
Blood plasma
(49)
Heart
(44)
Blood
(43)
Blood cell
(40)
Kidney
(39)
Fibroblast
(37)
Plant cell
(35)
T cell
(32)
Macrophage
(31)
Colon
(31)
B cell
(30)
Blood serum
(29)
Leaf
(28)
Cell suspension culture
(25)
Root
(22)
Embryo
(22)
Stem cell
(20)
Whole body
(20)
Hepatocyte
(19)
Bone marrow
(18)
Skin
(17)
Testis
(16)
Monocyte
(15)
Melanocyte
(13)
Disease
Breast cancer
(46)
Disease free
(39)
Colon cancer
(39)
Acute leukemia
(22)
Cardiovascular system disease
(20)
Alzheimer's disease
(16)
Lung adenocarcinoma
(13)
Lung cancer
(13)
Malignant neoplasm of ovary
(13)
Lymphoma
(12)
Type 2 diabetes mellitus
(12)
Cervix carcinoma
(11)
Melanoma
(11)
COVID-19
(11)
Prostate adenocarcinoma
(10)
Parkinson's disease
(9)
Brain cancer
(8)
Non-small cell lung carcinoma
(7)
Wounds and Injuries
(7)
Severe acute respiratory syndrome
(6)
Multiple myeloma
(6)
Human immunodeficiency virus infectious disease
(6)
Brain glioblastoma multiforme
(5)
Chronic lymphocytic leukemia
(5)
Pancreatic cancer
(5)
Carcinoma
(4)
Multiple sclerosis
(4)
Congenital disorder of glycosylation
(4)
Neuroblastoma
(4)
Not Available
(1)
Technology Type
Mass Spectrometry
(1626)
Shotgun proteomics
(1063)
Bottom-up proteomics
(380)
Data-dependent acquisition
(248)
Affinity purification coupled with mass spectrometry proteomics
(72)
Top-down proteomics
(43)
SRM/MRM
(15)
Gel-based experiment
(15)
Data-independent acquisition
(14)
SWATH MS
(12)
Mass spectrometry
(6)
All-ion fragmentation
(6)
Chemical cross-linking coupled with mass spectrometry proteomics
(4)
Proteogenomics
(3)
Mass spectrometry imaging
(2)
Affinity proteomics
(2)
DiaPASEF
(2)
Glycoproteomics
(1)
Immunopeptidomics
(1)
MSE
(1)
Instrument Platform
Orbitrap Fusion Lumos
(25)
Orbitrap Fusion
(23)
Q Exactive
(15)
Orbitrap Eclipse
(12)
Q Exactive Plus
(7)
Q Exactive HF-X
(6)
LTQ Orbitrap Elite
(6)
Liquid Chromatography MS - negative - reverse phase
(4)
Liquid Chromatography MS - positive - reverse phase
(4)
LTQ Orbitrap Velos
(3)
Q-Exactive HF-X (Thermo Fisher)
(2)
Orbitrap Exploris 480
(2)
Q Exactive HF
(2)
Liquid Chromatography MS - alternating - hilic
(2)
Illumina HiSeq 2500
(1)
Instrument
(1)
Thermo Fisher Oribitrap Elite Mass Spectrometer
(1)
Thermo Q-Exactive HF (QE) Quadrupole-Obitrap mass spectrometer
(1)
Q-Exactive HF (QE) Quadrupole-Obitrap mass spectrometer
(1)
Orbitrap Lumos
(1)
NanoUPLC-MS/MS
(1)
Orbitrap Astral Zoom
(1)
Orbitrap Fusion MS with Easy nLC-1200
(1)
Orbitrap Ascend
(1)
Q-Exactive
(1)
Orbitrap Astral
(1)
Orbitrap Fusion ETD
(1)
QExactive HFX
(1)
Liquid Chromatography MS - alternating - reverse phase
(1)
Publication Date
2023
(299)
2025
(281)
2022
(268)
2024
(227)
2026
(206)
2021
(204)
2020
(161)
2019
(96)
2018
(90)
2017
(29)
2016
(24)
2015
(9)
2014
(3)
2012
(2)
2013
(1)
UNIPROT ID/AC
A0A0R0K5X3_SOYBN
(2)
3847.GLYMA05G03900.1
(2)
I1LYQ5_SOYBN
(2)
3847.GLYMA02G41160.2
(2)
K7LBU6_SOYBN
(2)
A0A368UIF2_SOYBN
(2)
A0A0R0GEU1_SOYBN
(2)
K7L749_SOYBN
(2)
K7LYV4_SOYBN
(2)
I1N6V9_SOYBN
(2)
I1LN08_SOYBN
(2)
I1N2H6_SOYBN
(2)
K7LTB1_SOYBN
(2)
I1LX73_SOYBN
(2)
I1LB20_SOYBN
(2)
A0A0R0H1C4_SOYBN
(2)
I1K275_SOYBN
(2)
K7KWH3_SOYBN
(2)
I1JEC2_SOYBN
(2)
I1KCJ1_SOYBN
(2)
A0A0R4J5S0_SOYBN
(2)
K7KDX4_SOYBN
(2)
K7MKJ8_SOYBN
(2)
3847.GLYMA13G16860.1
(2)
A0A0R0L1E8_SOYBN
(2)
A0A0R0IVJ3_SOYBN
(2)
3847.GLYMA18G04745.1
(2)
I1JV05_SOYBN
(2)
3847.GLYMA0886S100.1
(2)
I1JMK6_SOYBN
(2)
CHEBI ID
CHEBI:28300
(3)
CHEBI:18183
(2)
CHEBI:15603
(2)
CHEBI:46961
(2)
CHEBI:15354
(2)
CHEBI:17750
(2)
CHEBI:16811
(2)
CHEBI:16708
(2)
CHEBI:18237
(2)
CHEBI:29016
(2)
CHEBI:27570
(2)
CHEBI:16347
(2)
CHEBI:189571
(1)
CHEBI:189567
(1)
CHEBI:189566
(1)
CHEBI:189565
(1)
CHEBI:189564
(1)
CHEBI:189568
(1)
CHEBI:165589
(1)
CHEBI:189570
(1)
CHEBI:189569
(1)
CHEBI:165721
(1)
CHEBI:171952
(1)
CHEBI:186693
(1)
CHEBI:3333
(1)
CHEBI:6348
(1)
CHEBI:176767
(1)
CHEBI:176711
(1)
CHEBI:180716
(1)
CHEBI:7444
(1)
Metabolite Name
Betaine
(4)
Phytosphingosine
(3)
Adenine
(3)
Choline
(3)
Terpestacin
(2)
N,N-Dimethylaniline
(2)
Trigonelline
(2)
Erucamide
(2)
Lovastatin
(2)
Canthaxanthin
(2)
Levetiracetam
(2)
Styrene
(2)
Acetylcholine
(2)
Nicotinamide
(2)
Methionine
(2)
Glycocholic acid
(2)
Stearic acid
(2)
Oleamide
(2)
Zinniol
(2)
Testosterone
(2)
Oleic acid
(2)
Glutamine
(2)
Citrate
(2)
Azelaic acid
(2)
Cytosine
(2)
Adenosine
(2)
Hypoxanthine
(2)
L-Carnitine
(2)
Methyl Jasmonate
(2)
2-(6-hydroxy-6-methyloctyl)-2H-furan-5-one
(1)
First Public Date
2025
(6)
2023
(6)
2026
(5)
2024
(5)
2019
(5)
2021
(1)
2018
(1)
Classification
bacteria
(1)
Modification
Not available
(2)
N6
(1)
2x(15)N labeled L-lysine
(1)
N6-dimethyl-L-lysine
(1)
Study type
RNA-seq of coding RNA
(1)
Release Date
2022
(99)
2023
(91)
2021
(81)
2025
(64)
2024
(62)
2020
(56)
2019
(30)
2018
(23)
2015
(12)
2017
(11)
2026
(9)
2016
(8)
2014
(6)
2013
(2)
2012
(2)
2010
(1)
Lab affiliation
European Molecular Biology Laboratory
(18)
Umea University
(14)
USDA-ARS
(12)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK
(11)
Cellzome
(10)
Cornell University
(8)
Department of Laboratory Medicine and Pathology Mayo Clinic, Rochester, Minnesota 55905 United States
(7)
Cambridge Institute for Medical Research, University of Cambridge
(7)
Moffitt Cancer Center Tampa, FL, USA
(6)
The University of Melbourne
(6)
Chronic Disease Programme (UFIEC), Instituto de Salud Carlos III, 28220 Majadahonda, Madrid, Spain
(5)
Cellzome, a GSK company
(5)
Aarhus University, Denmark
(5)
The Institute of Cancer Research
(5)
The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China.
(4)
Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology
(4)
Molecular Genetics, RPTU Kaiserslautern
(4)
Centre for Cancer Cell & Molecular Biology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
(4)
Thoracic Oncology Moffitt Cancer Center Tampa, FL, USA
(4)
Vanderbilt University Proteomics Core
(4)
College of Life Sciences, South-Central University for Nationalities
(4)
Principal Investigator Centre for Targeted Protein Degradation, School of Life Sciences
(4)
Institute of Cancer Research, London
(4)
VetMedZg Laboratory,Faculty of Veterinary Medicine, University of Zagreb, Zagreb, Croatia Institute of Biodiversity, Animal Health & Comparative Medicine, College of Medicine, Veterinary Medicine and Life Sciences, University of Glasgow, Glasgow, UK
(4)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University
(4)
Harvard Medical School
(4)
Dept. Oncology Pathology, Karolinska Institutet, and Scilifelab, Stockholm, Sweden
(4)
The Scripps Research Institute
(4)
St. Jude Children's Research Hospital
(4)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital
(4)
Tags
xref:PubMed:31201317
(4)
xref:PubMed:41077125
(2)
xref:PubMed:37252797
(1)
xref:PubMed:38942927
(1)
xref:PubMed:29807996
(1)
xref:PubMed:35181733
(1)
xref:PubMed:42207886
(1)
xref:PubMed:38590561
(1)
xref:PubMed:41827658
(1)
pathogen
(1)
pathogen:bacterium
(1)
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A benchmarking protocol for intact protein-level Tandem Mass Tag (TMT) labeling for quantitative top-down proteomics.
Not available
S-EPMC9587358
|
biostudies-literature
Cite
Optimization of protein-level tandem mass tag (TMT) labeling conditions in complex samples with top-down proteomics.
Not available
S-EPMC9371347
|
biostudies-literature
Cite
Identification of nine signature proteins involved in periodontitis by integrated analysis of TMT proteomics and transcriptomics.
Not available
S-EPMC9397367
|
biostudies-literature
Cite
Assessment of TMT Labeling Efficiency in Large-Scale Quantitative Proteomics: The Critical Effect of Sample pH.
Not available
S-EPMC8154127
|
biostudies-literature
Cite
Development of an Adaptive, Economical, and Easy-to-Use SP3-TMT Automated Sample Preparation Workflow for Quantitative Proteomics.
Not available
S-EPMC11888279
|
biostudies-literature
Cite
Development of an Adaptive, Economical, and Easy-to-Use SP3-TMT Automated Sample Preparation Workflow for Quantitative Proteomics.
Not available
S-EPMC12150330
|
biostudies-literature
Cite
TMT-labeling Proteomics of Papillary Thyroid Carcinoma Reveal Invasive Biomarkers.
Not available
S-EPMC7477402
|
biostudies-literature
Cite
TMT proteomics analysis of a pseudocereal crop, quinoa (
Chenopodium quinoa
Willd.), during seed maturation.
Not available
S-EPMC9678934
|
biostudies-literature
Cite
TMT-based Multiplexed (Chemo)proteomics on the Orbitrap Astral Mass Spectrometer
This dataset contains an evaluation of TMT-based multiplexed proteomics on the Orbitrap Astral mass spectrometer.
ORGANISM(S):
Homo Sapiens (ncbitaxon:9606)
2024-12-17
|
MSV000096674
|
MassIVE
Cite
TMT-Based Quantitative Proteomics Analysis of Synovial Fluid-Derived Exosomes in Inflammatory Arthritis.
Not available
S-EPMC8961740
|
biostudies-literature
Cite
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