Tong J J - OmicsDI

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Unknown (21481)
Proteomics (343)
Transcriptomics (53)
Metabolomics (33)
Genomics (21)
Multiomics (6)
Genomic (2)
Other (2)
Models (1)

Organisms

Homo sapiens (228)
Mus musculus (90)
Rattus norvegicus (13)
Escherichia coli (12)
Oryza sativa (7)
Arabidopsis thaliana (6)
Saccharomyces cerevisiae (5)
Bombyx mori (4)
Oryza sativa Indica Group (3)
Bos taurus (3)
Sus scrofa domesticus (3)
Schizosaccharomyces pombe (2)
Drosophila melanogaster (2)
Mycobacterium tuberculosis H37Rv_2009 (2)
Ophiocordyceps sinensis (2)
Ovis aries (2)
Severe acute respiratory syndrome coronavirus 2 (2)
Chlorocebus sabaeus (2)
Bacteria (2)
Brassica oleracea (1)
Brassica rapa (1)
Yersinia pestis (1)
Caenorhabditis elegans (1)
Helicobacter pylori G27 (1)
Listeria monocytogenes EGD (1)
Listeria monocytogenes EGD-e (1)
Solanum lycopersicum (1)
Spinacia oleracea (1)
Vibrio cholerae O1 biovar El Tor str. N16961 (1)
Plasmodium (1)

Organisms

Mus musculus (6)
Yersinia pestis (1)

Repository

pride (190)
iProX (117)
biostudies-arrayexpress (57)
MetaboLights (33)
MassIVE (16)
PeptideAtlas (14)
EGA (9)
ENA (8)
jPOST (4)
dbGaP (2)
GPMDB (2)
PanoramaPublic (2)
BioModels (1)

Tissue

Cell culture (44)
Epithelial cell (18)
Lung (16)
Liver (12)
Plasma Non-glyco (11)
Leaf (10)
Plant cell (8)
Blood (6)
Brain (6)
Embryo (6)
Heart (6)
Blood cell (5)
Kidney (5)
Spleen (5)
Stem cell (5)
Cell suspension culture (4)
Hepatocyte (4)
Macrophage (4)
Oocyte (4)
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Pupal wing (4)
Testis (4)
Others (3)
Bone marrow (3)
Primary cell (3)
Skin (3)
Abdominal adipose tissue (2)
B cell (2)
Blood plasma (2)
Embryonic stem cell (2)

Disease

Disease free (9)
Acute leukemia (3)
Breast cancer (3)
Colon cancer (3)
Influenza (3)
Lung cancer (3)
Not Available (2)
Brain disease (2)
Liver cancer (2)
Non-small cell lung carcinoma (2)
Rheumatoid arthritis (2)
Neonatal abstinence syndrome (1)
Septic peritonitis (1)
Acute kidney failure (1)
Alzheimer's disease 1 (1)
Aortic dissection (1)
Bronchopulmonary dysplasia (1)
Dehydration (1)
Endometrial cancer (1)
Hepatocellular carcinoma (1)
Inflammation (1)
Kidney disease (1)
Lung benign neoplasm (1)
Lung carcinoma in situ (1)
Malaria (1)
Melanoma (1)
Multiple myeloma (1)
Myopia (1)
Osteoporosis (1)
Parasitic infectious disease (1)

Technology Type

Mass Spectrometry (190)
Shotgun proteomics (79)
Bottom-up proteomics (28)
Affinity purification coupled with mass spectrometry proteomics (25)
Mass spectrometry (22)
Data-dependent acquisition (21)
Gel-based experiment (21)
Mass spectrometry assay (10)
Data-independent acquisition (9)
Top-down proteomics (8)
SWATH MS (4)
Affinity proteomics (2)
All-ion fragmentation (2)
Affymetrix 6.0 (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
NMR spectroscopy assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
Glycoproteomics (1)
Immunopeptidomics (1)
Mass spectrometry imaging (1)
Proteogenomics (1)
SRM/MRM (1)

Instrument Platform

TripleTOF 5600 (13)
Liquid Chromatography MS - negative - reverse phase (12)
Liquid Chromatography MS - positive - reverse phase (12)
Liquid Chromatography MS - negative - hilic (5)
Liquid Chromatography MS - positive - hilic (5)
Q Exactive Plus (4)
Illumina NovaSeq 6000 (3)
MS:1000031 (3)
Q Exactive (3)
Gas Chromatography MS - positive (3)
Instrument (2)
Orbitrap Exploris 480 (2)
Q Exactive HF-X (2)
6540 Q-TOF LC/MS (Agilent) (2)
API 4000 QTRAP (AB Sciex) (2)
TSQ Quantum XLS (Thermo Scientific) (2)
Vortex (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Synapt G2 MS (1)
5975C Series GC/MSD (Agilent) (1)
6460 Triple Quadrupole LC/MS (Agilent) (1)
Agilent 5975E GC/MSD (Agilent) (1)
Bruker (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Gas Chromatography MS - positive - medium polarity - Flame ionisation detector MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - - - LTQ Orbitrap Velos (Thermo Scientific) (1)

Publication Date

2025 (68)
2023 (55)
2022 (52)
2021 (43)
2026 (39)
2024 (36)
2015 (21)
2020 (20)
2016 (16)
2017 (14)
2014 (13)
2019 (12)
2013 (11)
2018 (9)
2012 (6)
2011 (6)
2010 (5)
2007 (3)
2005 (1)
2009 (1)
2008 (1)
2006 (1)
2004 (1)

UNIPROT ID/AC

A0A024RC46 (14)
B3KML9 (14)
B3KT93 (14)
B4DRV9 (14)
B4E3A4 (14)
E9PB61 (14)
G5E972 (14)
G8JLB6 (14)
H0YAR2 (14)
H0YJH7 (14)
I3L4N8 (14)
J9JID7 (14)
O00148 (14)
O00571 (14)
O15523 (14)
O43143 (14)
O43390 (14)
O60506 (14)
O60832 (14)
O94973 (14)
O95678 (14)
O95782 (14)
O95782-2 (14)
P02533 (14)
P02538 (14)
P02545 (14)
P02545-2 (14)
P02545-3 (14)
P02786 (14)
P04259 (14)

ENSEMBL ID

ENSG00000170477 (12)
ENSG00000247315 (7)
ENSG00000147251 (4)

CHEBI ID

CHEBI:15428 (10)
CHEBI:16750 (9)
CHEBI:29016 (9)
CHEBI:30769 (9)
CHEBI:15611 (8)
CHEBI:15741 (8)
CHEBI:15756 (8)
CHEBI:16335 (8)
CHEBI:16704 (8)
CHEBI:16708 (8)
CHEBI:17368 (8)
CHEBI:17822 (8)
CHEBI:18012 (8)
CHEBI:27570 (8)
CHEBI:30746 (8)
CHEBI:15891 (7)
CHEBI:16449 (7)
CHEBI:16737 (7)
CHEBI:17154 (7)
CHEBI:17497 (7)
CHEBI:17509 (7)
CHEBI:17596 (7)
CHEBI:17750 (7)
CHEBI:18186 (7)
CHEBI:18237 (7)
CHEBI:22660 (7)
CHEBI:24898 (7)
CHEBI:25017 (7)
CHEBI:25094 (7)
CHEBI:26986 (7)

Metabolite Name

Adenine (9)
Glycine (9)
Taurine (9)
Glutamine (8)
Asparagine (7)
Benzoic acid (7)
Guanosine (7)
Hypoxanthine (7)
Inosine (7)
Alanine (6)
Glycolic acid (6)
L-Alanine (6)
L-Serine (6)
Leucine (6)
Pyroglutamic acid (6)
Sucrose (6)
Uridine (6)
Adenosine (5)
Allantoin (5)
Arginine (5)
Betaine (5)
Fructose (5)
Glucose (5)
Glyceric acid (5)
Glycerol (5)
L-Leucine (5)
L-Proline (5)
L-Tryptophan (5)
Lysine (5)
Methionine (5)

First Public Date

2023 (3)
2014 (2)
2026 (1)
2025 (1)
2024 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Shanghai Jiao Tong University (7)
Shanghai Jiao Tong University School of Medicine (4)
Biological Science Research Center, Southwest University, Chongqing, 400715, China (3)
Shanghai Center for Systems Biomedicine, Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200240, China (3)
Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, Collaborative Innovation Center of Hematology, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200000, China (3)
State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, China. (3)
State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China (3)
1. Department of Biochemistry and Molecular Cell Biology, State Key Laboratory of Oncogenes and Related Genes, Shanghai Key Laboratory for Tumor Microenvironment and Inflammation, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine. (2)
1VIB Center for Medical Biotechnology, VIB, Ghent, 9052, Belgium 2Department of Biomolecular Medicine, Ghent University, Ghent, 9052, Belgium (2)
Beijing Key Laboratory for Dairy Cow Nutrition, Beijing University of Agriculture (2)
Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China (2)
Brain Injury Center, Renji Hospital, School of Medicine, Shanghai Jiao Tong University; Shanghai Institute of Head Trauma, Shanghai, China, 200127. (2)
College of Resources and Environment, Fujian Agricultural and Forestry University (2)
Division of Medical Inflammation Research, Dept. Medical Biochemistry and Biophysics, Karolinska Institute, Sweden (2)
Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101, China. (2)
Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (2)
Rutgers University, Newark, USA (2)
Shanghai Center for Systems Biomedicine Shanghai Jiao Tong University (2)
Shanghai Institute of Rheumatology, Renji Hospital, Shanghai Jiao Tong University School of Medicine (SJTUSM) (2)
Shanghai Institute of Thoracic Oncology, Shanghai Chest Hospital, Shanghai Jiao Tong University, Shanghai 200030 (2)
Shanghai Jiao Tong University Affiliated Sixth People's Hospital (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
The Fifth Affiliated Hospital of Guangzhou Medical University (2)
The Hospital For Sick Children, Program in Molecular Structure and Function, Princess Margaret Cancer Centre, and Department of Molecular Genetics, University of Toronto. Peter Gilgan Centre for Research and Learning, 686 Bay Street, Toronto M5G 0A4, Canada (2)
University of Florida (2)
1 Department of Cardiology, Zhongshan Hospital, Fudan University, Shanghai Institute of Cardiovascular Diseases, China. 2 Department of Cardiovascular Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. (1)
1 Department of Clinical Nutrition, Shanghai Children's Medical Center, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200127, China 2 Clinical Research Center, Shanghai Children's Medical Center, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200127, China (1)
1 National Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention (Chinese Center for Tropical Diseases Research); NHC Key Laboratory of Parasite and Vector Biology; WHO Collaborating Center for Tropical Diseases; National Center for International Research on Tropical Diseases, Shanghai 200025, China 2 The School of Global Health, Chinese Center for Tropical Diseases Research, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China (1)
1 VIB Center for Medical Biotechnology, VIB, Ghent, East Flanders, 9052, Belgium 2 Department of Biomolecular Medicine, Ghent University, Ghent, East Flanders, 9052, Belgium (1)
1State Key Laboratory of Digital Medical Engineering, Department of Otolaryngology Head and Neck Surgery, Zhongda Hospital, School of Life Sciences and Technology, School of Medicine, Advanced Institute for Life and Health, Jiangsu Province High-Tech Key Laboratory for Bio-Medical Research, Southeast University, Nanjing 210096, China.2 Co-Innovation Center of Neuroregeneration, Nantong University, Nantong 226001, China. (1)

IsPrivate

False (1)

Classification

bacteria (1)

Modification

Not available (1)

Study type

Transcription profiling by array (34)
RNA-seq of coding RNA (9)
ChIP-seq (4)
RNA-seq of coding RNA from single cells (4)
ChIP-chip by tiling array (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
ChIP-chip by array (1)

Release Date

2025 (3287)
2022 (3071)
2023 (2734)
2024 (2564)
2021 (2450)
2020 (1689)
2019 (1154)
2018 (904)
2017 (831)
2016 (667)
2026 (514)
2015 (504)
2014 (385)
2013 (233)
2012 (177)
2011 (112)
2010 (84)
2009 (74)
2008 (40)
2007 (17)
2006 (17)
2005 (9)
2004 (7)
2002 (4)
2000 (3)
2003 (2)
1999 (2)
2001 (1)
1998 (1)
1997 (1)

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Steam-exploded okara ameliorates hepatic lipid metabolism in high-fat diet-induced obese C57BL/6J mice: Evidence from multi-omics characterization

Okara, a byproduct of soybean processing, possesses valuable nutritional and physiological properties. Steam explosion, an efficient physical modification technique, can increase the soluble dietary fiber (SDF) content in okara and potentially amplify its health benefits, such as anti-obesity eff...

2025-10-23 | MTBLS13154 | MetaboLights

Effects of Yulin Tong Bu formula on modulating gut microbiota and fecal metabolite interactions in mice with polycystic ovary syndrome

BACKGROUND: Polycystic ovarian syndrome (PCOS) is a common endocrine disorder characterized by hyperandrogenism, ovarian dysfunction and polycystic ovarian morphology. Gut microbiota dysbiosis and metabolite are associated with PCOS clinical parameters. Yulin Tong Bu formula (YLT...

2023-02-02 | MTBLS6736 | MetaboLights

The histone methyltransferase Setd2 is indispensable for V(D)J recombination.

Not available

S-EPMC6659703 | biostudies-literature

Transapical Transcatheter Aortic Valve Implantation with the J-Valve System in Aortic Regurgitation.

Not available

S-EPMC11886369 | biostudies-literature

Blockade of RBP-J-Mediated Notch Signaling Pathway Exacerbates Cardiac Remodeling after Infarction by Increasing Apoptosis in Mice.

Not available

S-EPMC6051300 | biostudies-literature

Structural insights into RNase J that plays an essential role in Mycobacterium tuberculosis RNA metabolism.

Not available