Tong P P - OmicsDI

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Unknown (12861)
Proteomics (231)
Transcriptomics (147)
Metabolomics (90)
Genomics (83)
Multiomics (6)
Genomic (2)
Other (1)

Organisms

Schizosaccharomyces pombe (157)
Oryza sativa Indica Group (157)
Sinorhizobium meliloti BL225C (157)
Sus scrofa domesticus (157)
Ostreococcus tauri (157)
Saccharomyces cerevisiae (157)
Staphylococcus aureus (157)
Homo sapiens (135)
Mus musculus (56)
Rattus norvegicus (12)
Drosophila melanogaster (6)
Oryza sativa (4)
Saccharomyces cerevisiae (4)
Oryza sativa Indica Group (3)
Arabidopsis thaliana (3)
Severe acute respiratory syndrome coronavirus 2 (2)
Shewanella loihica PV-4 (1)
Brassica oleracea (1)
Brassica rapa (1)
Yersinia pestis (1)
Schizosaccharomyces pombe (1)
Oryza sativa Japonica Group (1)
Caenorhabditis elegans (1)
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Triticum aestivum (1)
Danio rerio (1)
Pseudomonas aeruginosa PA14 (1)
Ophiocordyceps sinensis (1)
Rattus rattus (1)
Plasmodium (1)

Organisms

Homo sapiens (21)
Mus musculus (11)
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Porphyromonas gingivalis SJD12 (1)
Porphyromonas gingivalis SJD11 (1)
Porphyromonas gingivalis SJD2 (1)
Porphyromonas gingivalis SJD5 (1)
Porphyromonas gingivalis SJD4 (1)
Pseudomonas aeruginosa M18 (1)
Pseudomonas protegens (1)
uncultured bacterium (1)
Vitis vinifera (1)
Danio rerio (1)

Repository

biostudies-arrayexpress (157)
pride (157)
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ENA (58)
iProX (54)
EGA (15)
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jPOST (4)
PeptideAtlas (3)
dbGaP (2)
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Tissue

Cell culture (31)
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Blood (1)

Disease

Disease free (6)
Acute leukemia (4)
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Rheumatoid arthritis (2)
Not infected (1)
Nasopharyngeal carcinoma (1)
Not Available (1)
Diabetes (1)
Lung benign neoplasm (1)
Gastric body carcinoma (1)
Rhabdomyosarcoma (1)
Lung carcinoma in situ (1)
Acute kidney failure (1)
Aortic dissection (1)
Acute myocardial infarction (1)
Alzheimer's disease 1 (1)
Inflammation (1)
Polycystic Kidney (1)
Esophageal cancer (1)
Brain disease (1)
Myopia (1)
Kidney disease (1)
Dehydration (1)
Hepatocellular carcinoma (1)
Severe acute respiratory syndrome (1)
Proliferative diabetic retinopathy (1)
Mixed disorder as reaction to stress (1)

Technology Type

Mass Spectrometry (158)
Shotgun proteomics (80)
Mass spectrometry (53)
Mass spectrometry assay (34)
Bottom-up proteomics (24)
Affinity purification coupled with mass spectrometry proteomics (20)
Data-dependent acquisition (17)
Gel-based experiment (7)
Data-independent acquisition (6)
All-ion fragmentation (4)
SWATH MS (3)
Top-down proteomics (3)
Illumina HiSeq 2000 (2)
NMR spectroscopy (2)
Affinity proteomics (2)
SRM/MRM (2)
Illumina HiSeq 2500 (1)
Affymetrix 6.0 (1)
NMR spectroscopy assay (1)
EI (1)
ESI (1)
Proteogenomics (1)
Glycoproteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (32)
Liquid Chromatography MS - negative - reverse phase (32)
Liquid Chromatography MS - negative - reverse-phase (11)
Liquid Chromatography MS - positive - reverse-phase (9)
Liquid Chromatography MS - negative - hilic (9)
Liquid Chromatography MS - positive - hilic (8)
Liquid Chromatography MS - alternating - hilic (6)
Gas Chromatography MS - positive (4)
Liquid Chromatography MS - alternating - reverse phase (4)
6540 Q-TOF LC/MS (Agilent) (3)
MS:1000031 (3)
Illumina HiSeq 2500 (2)
Illumina NovaSeq 6000 (2)
Orbitrap Exploris 120 (2)
Q Exactive (2)
TSQ Quantum XLS (Thermo Scientific) (2)
Bruker (2)
Liquid Chromatography MS - (2)
Exactive (Thermo Scientific) (2)
ScanArray 4000XL [PerkinElmer] (1)
Vortex (1)
HiSeq X Ten (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
Instrument (1)
Synapt G2 MS (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
TripleTOF 5600 (1)
Q Exactive Plus (1)
Orbitrap Exploris 480 (1)

Publication Date

2025 (69)
2026 (44)
2022 (31)
2016 (30)
2021 (29)
2023 (27)
2010 (25)
2024 (25)
2015 (24)
2014 (24)
2012 (23)
2020 (20)
2013 (19)
2017 (14)
2019 (11)
2011 (10)
2008 (10)
2018 (10)
2006 (3)
2009 (1)
2007 (1)
2004 (1)

UNIPROT ID/AC

Q6ZVE7 (3)
Q99619 (3)
Q8N4U5 (3)
Q9UBZ4 (3)
Q96QP1 (3)
Q9Y576 (3)
Q6ZTQ3 (3)
Q9H633 (3)
Q96PC5-2 (3)
Q96PC5 (3)
Q8TDW5 (3)
Q9NXZ2 (3)
Q8IZP6 (3)
Q9UHA2 (3)
Q6MZQ0 (3)
Q9C019 (3)
Q96EP1 (3)
Q8IYM2 (3)
Q86SJ2 (3)
Q02833 (3)
O43194 (3)
Q9Y2C3 (3)
O00338 (3)
Q6NSJ2 (3)
Q17R98 (3)
Q9Y664 (3)
Q9UNP4 (3)
Q96BZ9 (3)
Q8WUA8 (3)
Q3MII6 (3)

ENSEMBL ID

ENSG00000247315 (3)
ENSG00000147251 (3)
ENSG00000170477 (3)

CHEBI ID

CHEBI:30769 (18)
CHEBI:16704 (15)
CHEBI:16708 (14)
CHEBI:16750 (14)
CHEBI:25017 (14)
CHEBI:15428 (14)
CHEBI:29016 (14)
CHEBI:30915 (14)
CHEBI:15741 (13)
CHEBI:18012 (13)
CHEBI:32816 (13)
CHEBI:78320 (13)
CHEBI:17596 (13)
CHEBI:15756 (13)
CHEBI:17368 (13)
CHEBI:17822 (12)
CHEBI:15611 (12)
CHEBI:26986 (12)
CHEBI:16335 (12)
CHEBI:17509 (12)
CHEBI:17750 (12)
CHEBI:15891 (12)
CHEBI:16449 (12)
CHEBI:16737 (12)
CHEBI:16919 (12)
CHEBI:30746 (11)
CHEBI:17154 (11)
CHEBI:16680 (10)
CHEBI:25094 (10)
CHEBI:16344 (10)

Metabolite Name

Hypoxanthine (23)
Taurine (21)
Adenine (21)
Inosine (16)
Adenosine (15)
Creatine (15)
Choline (14)
Cytosine (14)
L-Tryptophan (14)
Guanosine (14)
Uridine (14)
Creatinine (14)
Glycine (13)
Betaine (13)
Pyroglutamic acid (13)
Allantoin (13)
Pyridoxine (13)
L-Serine (13)
Leucine (12)
Indole (12)
Xanthine (12)
L-Valine (12)
L-Tyrosine (12)
Uracil (11)
L-Threonine (11)
Spermidine (11)
Guanine (11)
Threonine (11)
Sarcosine (11)
Uric acid (11)

First Public Date

2025 (10)
2022 (9)
2024 (7)
2014 (7)
2021 (4)
2018 (4)
2017 (3)
2016 (3)
2013 (3)
2026 (2)
2023 (2)
2020 (2)
2015 (2)

Classification

bacteria (6)

Study type

Transcription profiling by array (109)
RNA-seq of coding RNA (18)
ChIP-seq (9)
Unknown experiment type (6)
ChIP-chip by tiling array (4)
Human - High-throughput sequencing (2)
ChIP-chip by array (2)
RNA-seq of non coding RNA (2)
Spatial transcriptomics by high-throughput sequencing (1)
Single nucleus RNA sequencing (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (1879)
2022 (1873)
2023 (1587)
2024 (1519)
2021 (1492)
2020 (1047)
2019 (645)
2017 (516)
2018 (507)
2016 (438)
2015 (380)
2014 (262)
2026 (261)
2013 (190)
2012 (129)
2010 (82)
2011 (81)
2008 (41)
2009 (40)
2007 (12)
2006 (10)
2005 (9)
2004 (8)
2002 (3)
2000 (3)
2003 (2)
2001 (2)

Lab affiliation

Shanghai Jiao Tong University (8)
College of Resources and Environment, Fujian Agricultural and Forestry University (4)
Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, Collaborative Innovation Center of Hematology, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200000, China (3)
State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China (3)
Biological Science Research Center, Southwest University, Chongqing, 400715, China (3)
State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, China. (3)
College of Resources and Environment, Fujian Agriculture and Forestry University (3)
Department of Laboratory Medicine, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China. (2)
1VIB Center for Medical Biotechnology, VIB, Ghent, 9052, Belgium 2Department of Biomolecular Medicine, Ghent University, Ghent, 9052, Belgium (2)
Division of Medical Inflammation Research, Dept. Medical Biochemistry and Biophysics, Karolinska Institute, Sweden (2)
The Hospital For Sick Children, Program in Molecular Structure and Function, Princess Margaret Cancer Centre, and Department of Molecular Genetics, University of Toronto. Peter Gilgan Centre for Research and Learning, 686 Bay Street, Toronto M5G 0A4, Canada (2)
College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi 712100, P.R. China (2)
Shanghai Institute of Rheumatology, Renji Hospital, Shanghai Jiao Tong University School of Medicine (SJTUSM) (2)
Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
1. Department of Biochemistry and Molecular Cell Biology, State Key Laboratory of Oncogenes and Related Genes, Shanghai Key Laboratory for Tumor Microenvironment and Inflammation, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine. (2)
China national rice research institute (1)
Wellcome Centre for Cell Biology, The University of Edinburgh (1)
The State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, Hubei, China (1)
Department of Biochemistry and Molecular Biology, College of Medicine, Chang Gung University, No.259, Wenhua 1st Rd., Guishan Dist., Taoyuan City 33302, Taiwan (R.O.C.) (1)
State Key Laboratory of Cardiovascular Disease, Fuwai Hospital, National Center for Cardiovascular Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100037, China (1)
Shanghai Diabetes Institute, Department of Endocrinology and Metabolism, Shanghai Sixth People’s Hospital Affiliated to Shanghai Jiao Tong University School of Medicine (1)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China, 201203 (1)
State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Faculty of Medicine and Life Sciences, Xiamen University, Xiamen, Fujian, China. (1)
Ruijin Hospital Affiliated to Shanghai Jiao Tong University School of Medicine (1)
Hospital for Sickkids, Toronto, Ontario, Canada (1)
Jun Jim Zhangjunjimzhang@sjtu.edu.cnMinistry of Education-Shanghai Key Laboratory of Children's Environmental Health, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine (1)
Hospital for Sickkids, University of Toronto (1)
1 VIB Center for Medical Biotechnology, VIB, Ghent, East Flanders, 9052, Belgium 2 Department of Biomolecular Medicine, Ghent University, Ghent, East Flanders, 9052, Belgium (1)
Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China. Liangzhu Laboratory, MOE Frontier Science Center for Brain Science and Brain-Machine Integration, State Key Laboratory of Brain-Machine Intelligence, Zhejiang University, Hangzhou,China. (1)

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Effects of Yulin Tong Bu formula on modulating gut microbiota and fecal metabolite interactions in mice with polycystic ovary syndrome

BACKGROUND: Polycystic ovarian syndrome (PCOS) is a common endocrine disorder characterized by hyperandrogenism, ovarian dysfunction and polycystic ovarian morphology. Gut microbiota dysbiosis and metabolite are associated with PCOS clinical parameters. Yulin Tong Bu formula (YLT...

2023-02-02 | MTBLS6736 | MetaboLights

Wen-Shen-Tong-Luo-Zhi-Tong Decoction regulates bone-fat balance in osteoporosis by adipocyte-derived exosomes.

Not available

S-EPMC10071966 | biostudies-literature

The p-STAT3/ANXA2 axis promotes caspase-1-mediated hepatocyte pyroptosis in non-alcoholic steatohepatitis.

Not available

S-EPMC9632054 | biostudies-literature

Identification of p-Y705 in FLAG-STAT3_ΔS701 expressed HeLa cell

Mass spectrogram showing the identification of Y705 phosphorylation (p-Y705) in FLAG-STAT3_ΔS701 expressed HeLa cell treated with IL-6 treated for 30 min.

ORGANISM(S): Homo Sapiens

PXD053547 |

Cu₃P/RGO Nanocomposite as a New Anode for Lithium-Ion Batteries.

Not available

S-EPMC5057080 | biostudies-literature

Cryo-electron microscopy structure of an archaeal ribonuclease P holoenzyme.

Not available

S-EPMC6565675 | biostudies-literature

Growth of Tellurium Nanobelts on h-BN for p-type Transistors with Ultrahigh Hole Mobility.

Not available

S-EPMC9018950 | biostudies-literature

Enhanced expression of ten-eleven translocation 1 reverses gemcitabine resistance in cholangiocarcinoma accompanied by a reduction in P-glycoprotein expression.