Tong Y Y - OmicsDI

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Unknown (24437)
Proteomics (381)
Transcriptomics (43)
Metabolomics (30)
Genomics (23)
Multiomics (6)
Other (2)
Models (1)

Organisms

Homo sapiens (242)
Mus musculus (94)
Rattus norvegicus (17)
Yersinia pestis CO92 (9)
Oryza sativa (7)
Saccharomyces cerevisiae (5)
Drosophila melanogaster (4)
Escherichia coli (4)
Chlamydomonas reinhardtii (2)
Bos taurus (2)
Ovis aries (2)
Severe acute respiratory syndrome coronavirus 2 (2)
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Triticum aestivum (2)
Brassica oleracea (1)
Yersinia pestis (1)
Arabidopsis thaliana (1)
Caenorhabditis elegans (1)
Helicobacter pylori G27 (1)
Listeria monocytogenes EGD (1)
Listeria monocytogenes EGD-e (1)
Mycolicibacterium smegmatis MC2 51 (1)
Olivierus martensii (1)
Ophiocordyceps sinensis (1)
Pseudomonas aeruginosa PA14 (1)
Spinacia oleracea (1)
Sus scrofa domesticus (1)
Vibrio cholerae O1 biovar El Tor str. N16961 (1)
unclassified Chlorella (1)
unclassified Symbiodinium (1)

Organisms

Curvibasidium rogersii (1)
Yersinia pestis (1)
gut metagenome (1)
Homo sapiens (1)
Mus musculus (1)

Repository

pride (208)
iProX (155)
biostudies-arrayexpress (46)
MetaboLights (30)
MassIVE (13)
EGA (12)
ENA (8)
PeptideAtlas (3)
GPMDB (2)
BioModels (1)
jPOST (1)
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Tissue

Cell culture (55)
Epithelial cell (17)
Lung (16)
Liver (10)
Brain (7)
Primary cell (6)
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Embryo (5)
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Disease

Disease free (3)
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Not Available (2)
Acute leukemia (2)
Brain disease (2)
Breast cancer (2)
Colon cancer (2)
Hepatocellular carcinoma (2)
Alzheimer's disease 1 (1)
Aortic dissection (1)
Bronchopulmonary dysplasia (1)
Colorectal cancer (1)
Endometrial cancer (1)
Human immunodeficiency virus infectious disease (1)
Inflammation (1)
Liver cancer (1)
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Lung carcinoma in situ (1)
Malaria (1)
Malignant neoplasm of ovary (1)
Malignant pleural mesothelioma (1)
Melanoma (1)
Multiple myeloma (1)
Non-small cell lung carcinoma (1)
Osteoarthritis (1)
Parkinson's disease (1)
Polycystic Kidney (1)
Trypanosomiasis (1)

Technology Type

Mass Spectrometry (208)
Shotgun proteomics (94)
Bottom-up proteomics (29)
Gel-based experiment (25)
Affinity purification coupled with mass spectrometry proteomics (24)
Mass spectrometry (20)
Data-dependent acquisition (20)
Mass spectrometry assay (9)
Data-independent acquisition (8)
Top-down proteomics (6)
SWATH MS (5)
Illumina HiSeq 2000 (2)
Affinity proteomics (2)
All-ion fragmentation (2)
SRM/MRM (2)
Affymetrix 6.0 (1)
NMR spectroscopy (1)
NMR spectroscopy assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
Glycoproteomics (1)
Immunopeptidomics (1)
MSE (1)
Mass spectrometry imaging (1)
Proteogenomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (11)
Liquid Chromatography MS - positive - reverse phase (10)
Liquid Chromatography MS - negative - hilic (5)
Liquid Chromatography MS - positive - hilic (5)
Illumina NovaSeq 6000 (4)
MS:1000031 (3)
Illumina HiSeq 4000 (2)
Instrument (2)
Q Exactive (2)
TripleTOF 5600 (2)
6540 Q-TOF LC/MS (Agilent) (2)
API 4000 QTRAP (AB Sciex) (2)
Liquid Chromatography MS - alternating - reverse phase (2)
TSQ Quantum XLS (Thermo Scientific) (2)
NextSeq 500 (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Orbitrap Fusion (1)
Q Exactive HF (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
Synapt G2 MS (1)
5975C Series GC/MSD (Agilent) (1)
6460 Triple Quadrupole LC/MS (Agilent) (1)
Agilent 5975E GC/MSD (Agilent) (1)
Bruker (1)
Exactive (Thermo Scientific) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Gas Chromatography MS - positive - medium polarity - Flame ionisation detector MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - hilic (1)

Publication Date

2025 (77)
2023 (62)
2022 (51)
2026 (48)
2021 (42)
2024 (41)
2020 (38)
2016 (19)
2018 (13)
2017 (12)
2019 (11)
2015 (10)
2014 (9)
2010 (9)
2013 (5)
2012 (5)
2011 (3)
2005 (1)
2006 (1)
2004 (1)

UNIPROT ID/AC

A0A024R563 (3)
A0A024R8H9 (3)
A0A024RAN2 (3)
A0A024RC46 (3)
A0A087WUD1 (3)
A0A087WVZ5 (3)
A0A087WWK8 (3)
A0A087WXI0 (3)
A0A087WZE9 (3)
A0A087X1S3 (3)
A0A0A0MR66 (3)
A0A0A0MS51 (3)
A0A0A0MSA7 (3)
A0A0B4J220 (3)
A0A0C4DG89 (3)
A0A0C4DGT3 (3)
A0AV96 (3)
A0AVT1 (3)
A0FGR8 (3)
A0FGR8-2 (3)
A0FGR8-6 (3)
A0JLT2 (3)
A0JNW5 (3)
A0MZ66 (3)
A0PJW6 (3)
A0PK00 (3)
A1A4S6 (3)
A1L0T0 (3)
A1L170 (3)
A1L390 (3)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:15428 (9)
CHEBI:15756 (9)
CHEBI:30769 (9)
CHEBI:16708 (8)
CHEBI:30805 (8)
CHEBI:15611 (7)
CHEBI:15741 (7)
CHEBI:16704 (7)
CHEBI:16750 (7)
CHEBI:17497 (7)
CHEBI:28842 (7)
CHEBI:29016 (7)
CHEBI:30746 (7)
CHEBI:15584 (6)
CHEBI:15891 (6)
CHEBI:15963 (6)
CHEBI:16335 (6)
CHEBI:16449 (6)
CHEBI:16737 (6)
CHEBI:17154 (6)
CHEBI:17351 (6)
CHEBI:17368 (6)
CHEBI:17509 (6)
CHEBI:17568 (6)
CHEBI:17596 (6)
CHEBI:17750 (6)
CHEBI:17822 (6)
CHEBI:18012 (6)
CHEBI:18186 (6)
CHEBI:22660 (6)

Metabolite Name

Adenine (9)
Taurine (8)
Betaine (7)
Glycine (7)
Inosine (7)
L-Alanine (7)
L-Serine (7)
Adenosine (6)
Benzoic acid (6)
Glutamine (6)
Glycolic acid (6)
Guanosine (6)
Hypoxanthine (6)
L-Allothreonine (6)
L-Tryptophan (6)
2-Hydroxycinnamic acid (5)
Asparagine (5)
Cytidine (5)
Dodecanoic acid (5)
Glutathione (5)
Glycerol (5)
L-Leucine (5)
L-Proline (5)
L-Tyrosine (5)
L-Valine (5)
Myristic acid (5)
Pyridoxine (5)
Pyroglutamic acid (5)
Sarcosine (5)
Spermidine (5)

First Public Date

2024 (2)
2023 (2)
2020 (2)
2026 (1)
2014 (1)

Lab affiliation

School of Automation and Intelligent Sensing, Shanghai Jiao Tong University (5)
Shanghai Jiao Tong University (5)
Laboratory of Microbiology Oceanography, State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, School of Oceanography, Shanghai JiaoTong University (4)
Shanghai Jiao Tong University School of Medicine (4)
Biological Science Research Center, Southwest University, Chongqing, 400715, China (3)
Shanghai Center for Systems Biomedicine, Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200240, China (3)
Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, Collaborative Innovation Center of Hematology, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200000, China (3)
State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, China. (3)
State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China (3)
wuhan union hospital (3)
1 Interdisciplinary Research Center on Biology and Chemistry, State Key Laboratory of Chemical Biology, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 201210, China 2 Shanghai Academy of Natural Sciences (SANS), Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 201210, China (2)
1. Department of Biochemistry and Molecular Cell Biology, State Key Laboratory of Oncogenes and Related Genes, Shanghai Key Laboratory for Tumor Microenvironment and Inflammation, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine. (2)
1VIB Center for Medical Biotechnology, VIB, Ghent, 9052, Belgium 2Department of Biomolecular Medicine, Ghent University, Ghent, 9052, Belgium (2)
Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China (2)
Brain Injury Center, Renji Hospital, School of Medicine, Shanghai Jiao Tong University; Shanghai Institute of Head Trauma, Shanghai, China, 200127. (2)
Department of Laboratory Medicine, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China. (2)
Division of Medical Inflammation Research, Dept. Medical Biochemistry and Biophysics, Karolinska Institute, Sweden (2)
Ph.D., Professor, Vice Dean (2)
Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (2)
School of Biomedical Sciences, The Chinese University of Hong Kong (2)
Shanghai Center for Systems Biomedicine Shanghai Jiao Tong University (2)
Shanghai Institute of Rheumatology, Renji Hospital, Shanghai Jiao Tong University School of Medicine (SJTUSM) (2)
Shanghai Institute of Thoracic Oncology, Shanghai Chest Hospital, Shanghai Jiao Tong University, Shanghai 200030 (2)
Shanghai Jiao Tong University Affiliated Sixth People's Hospital (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
The Fifth Affiliated Hospital of Guangzhou Medical University (2)
1 Department of Cardiology, Zhongshan Hospital, Fudan University, Shanghai Institute of Cardiovascular Diseases, China. 2 Department of Cardiovascular Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. (1)
1 Department of Clinical Nutrition, Shanghai Children's Medical Center, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200127, China 2 Clinical Research Center, Shanghai Children's Medical Center, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200127, China (1)
1 Department of Emergency, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (1)
1 Interdisciplinary Research Center on Biology and Chemistry, State Key Laboratory of Chemical Biology, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 201210, China 2 Shanghai Academy of Natural Sciences (SANS), Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 201210, China (lab head) (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Classification

bacteria (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (22)
RNA-seq of coding RNA (12)
Unknown experiment type (3)
ChIP-seq (3)
RNA-seq of coding RNA from single cells (3)
ChIP-chip by tiling array (1)
Spatial transcriptomics by high-throughput sequencing (1)
Single nucleus RNA sequencing (1)

Release Date

2025 (3940)
2022 (3541)
2023 (3116)
2024 (3055)
2021 (2821)
2020 (1831)
2019 (1264)
2018 (1007)
2017 (886)
2016 (699)
2026 (608)
2015 (516)
2014 (402)
2013 (238)
2012 (190)
2011 (117)
2010 (96)
2009 (59)
2008 (38)
2007 (17)
2006 (13)
2005 (11)
2004 (8)
2001 (4)
2002 (2)
2003 (1)
2000 (1)
1997 (1)

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Exploring the Glucose Fluxotype of the E. coli y-ome Using High-Resolution Fluxomics

We have developed a robust workflow to measure high-resolution fluxotypes (metabolic flux phenotypes) for large strain libraries under fully controlled growth conditions. This was achieved by optimizing and automating the whole high-throughput fluxomics process and integrating all relevant software ...

2021-05-13 | MTBLS2188 | MetaboLights

Effects of Yulin Tong Bu formula on modulating gut microbiota and fecal metabolite interactions in mice with polycystic ovary syndrome

BACKGROUND: Polycystic ovarian syndrome (PCOS) is a common endocrine disorder characterized by hyperandrogenism, ovarian dysfunction and polycystic ovarian morphology. Gut microbiota dysbiosis and metabolite are associated with PCOS clinical parameters. Yulin Tong Bu formula (YLT...

2023-02-02 | MTBLS6736 | MetaboLights

Differentially expressed proteins between WT Y. pestis and ΔhmwC

ORGANISM(S): Yersinia Pestis Co92

2023-06-12 | PXD042928 |

Transitions from a Kondo-like diamagnetic insulator into a modulated ferromagnetic metal in FeGa_3-yGe_y.

Not available

S-EPMC5879657 | biostudies-literature

A Novel Bispecific Antibody Targeting CD3 and Lewis Y with Potent Therapeutic Efficacy against Gastric Cancer.

Not available

S-EPMC8393954 | biostudies-literature

Dissecting the Underlying Pharmaceutical Mechanism of Chinese Traditional Medicine Yun-Pi-Yi-Shen-Tong-Du-Tang Acting on Ankylosing Spondylitis through Systems Biology Approaches.

Not available

S-EPMC5647417 | biostudies-literature

Seven new species of the genus Trilacuna Tong & Li, 2007 from Yunnan, China (Araneae, Oonopidae).

Not available

S-EPMC6367306 | biostudies-literature

Analysis of genetic admixture in Uyghur using the 26 Y-STR loci system.

Not available

S-EPMC4740765 | biostudies-literature

Four new species of the genus <i>Trilacuna</i> Tong & Li, 2007 (Araneae, Oonopidae) from China.

Not available

S-EPMC11645522 | biostudies-literature

Phenotypic and transcriptional analysis of the osmotic regulator OmpR in Yersinia pestis

Background The osmotic regulator OmpR in Escherichia coli regulates differentially the expression of major porin proteins OmpF and OmpC. In Yersinia enterocolitica and Y. pseudotuberculosis, OmpR is required for both virulence and survival within macrophages. However, the phenotypic and regulatory r...

ORGANISM(S): Yersinia pestis

2011-10-23 | E-GEOD-26601 | biostudies-arrayexpress

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