Torres J J - OmicsDI

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Unknown (6596)
Proteomics (99)
Transcriptomics (57)
Genomics (22)
Metabolomics (16)
Models (2)

Organisms

Homo sapiens (90)
Mus musculus (32)
Arabidopsis thaliana (11)
Medicago truncatula (4)
Helicobacter pylori (4)
Escherichia coli (3)
Rattus norvegicus (3)
Saccharomyces cerevisiae (3)
Bombus terrestris (2)
Rhizobium favelukesii (2)
Sus scrofa domesticus (2)
Severe acute respiratory syndrome coronavirus 2 (1)
Colletotrichum higginsianum (1)
Staphylococcus aureus subsp. aureus str. Newman (1)
Bradyrhizobium japonicum (1)
Chlorocebus aethiops (1)
Lotus japonicus (1)
Heterodera schachtii (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
Anisakis simplex (1)
Bos taurus (1)
Caenorhabditis elegans (1)
Corynebacterium diphtheriae bv. mitis str. ISS 3319 (1)
Erythrina velutina (1)
Homo (1)
Lasiodiplodia theobromae (1)
Lathyrus oleraceus (1)
Leishmania infantum (1)
Mycoplasma mycoides (1)
Mycoplasmopsis bovis (1)

Organisms

Arabidopsis thaliana (2)

Repository

pride (94)
biostudies-arrayexpress (59)
EGA (15)
MetaboLights (15)
ENA (4)
MassIVE (3)
BioModels (2)
geo (2)
GNPS (1)
iProX (1)
PanoramaPublic (1)

Tissue

Cell culture (13)
Liver (6)
Blood (5)
Blood plasma (5)
Brain (5)
Epithelial cell (4)
Fibroblast (4)
Heart (4)
Leaf (4)
Plant cell (3)
Breast (2)
Cell suspension culture (2)
Early embryonic cell (2)
Lung (2)
Macrophage (2)
Permanent cell line cell (2)
Saliva (2)
Tooth enamel (2)
Urine (2)
Adult endothelial progenitor cell (1)
Astrocyte (1)
Blood cell (1)
Blood platelet (1)
Blood serum (1)
Breast cancer cell (1)
Brown adipose tissue (1)
Cell (1)
Colon (1)
HeLa cell (1)
T cell (1)

Disease

Breast cancer (2)
Huntington Disease (2)
COVID-19 (1)
Acute leukemia (1)
Atherosclerosis (1)
Brain cancer (1)
Cancer (1)
Cervix carcinoma (1)
Colon adenocarcinoma (1)
Colon cancer (1)
Colorectal adenocarcinoma (1)
Congenital disorder of glycosylation (1)
Coronavirus infectious disease (1)
Diphtheria (1)
Disease free (1)
Disease of metabolism (1)
Hepatitis (1)
Hermansky-Pudlak syndrome (1)
Idiopathic pulmonary fibrosis (1)
Keratitis (1)
Leukemia (1)
Limb ischemia (1)
Liver disease (1)
Lung cancer (1)
Melanoma (1)
Ovarian cancer (1)
Parkinson's disease (1)
Perrault syndrome (1)
Pneumonia (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (94)
Shotgun proteomics (50)
Bottom-up proteomics (20)
Mass spectrometry (13)
Affinity purification coupled with mass spectrometry proteomics (9)
Data-dependent acquisition (9)
Gel-based experiment (8)
Data-independent acquisition (5)
SWATH MS (5)
Immunopeptidomics (4)
SRM/MRM (3)
Illumina HiSeq 2000 (2)
HDMSE (2)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Mass spectrometry assay (1)
NMR spectroscopy (1)
Affinity proteomics (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
MSE (1)
Mass spectrometry imaging (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (8)
Illumina NovaSeq 6000 (2)
Liquid Chromatography MS - negative - reverse phase (2)
UltrafleXtreme MALDI-TOF MS (Bruker) (2)
Zymo Research (1)
PAXgene tubes (1)
Maxwell® AS2000 instrument (1)
Qiagen (1)
TruSeq® Nano (1)
BGISEQ-500 (1)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
LTQ FT (1)
MaXis (1)
LCQ Deca XP Plus (1)
LTQ Orbitrap (1)
Q Exactive (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive (1)
MS Imaging - (1)
Nuclear Magnetic Resonance (NMR) - (1)
ESI-ION-TRAP (1)

Publication Date

2023 (21)
2022 (21)
2024 (18)
2026 (13)
2015 (12)
2017 (11)
2018 (10)
2021 (10)
2025 (9)
2016 (8)
2019 (6)
2014 (6)
2012 (6)
2007 (6)
2010 (5)
2020 (5)
2011 (4)
2013 (3)
2008 (3)

CHEBI ID

CHEBI:16113 (3)
CHEBI:16359 (3)
CHEBI:16811 (3)
CHEBI:28716 (3)
CHEBI:28865 (3)
CHEBI:30769 (3)
CHEBI:35038 (3)
CHEBI:1148 (2)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:15603 (2)
CHEBI:15741 (2)
CHEBI:15891 (2)
CHEBI:17191 (2)
CHEBI:17351 (2)
CHEBI:173703 (2)
CHEBI:17750 (2)
CHEBI:17775 (2)
CHEBI:17895 (2)
CHEBI:18186 (2)
CHEBI:18211 (2)
CHEBI:18237 (2)
CHEBI:182784 (2)
CHEBI:195271 (2)
CHEBI:24898 (2)
CHEBI:25094 (2)
CHEBI:27432 (2)
CHEBI:27997 (2)
CHEBI:28044 (2)

Metabolite Name

Cholesterol (3)
Cholic acid (3)
Succinate (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Citric acid (2)
Citrulline (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Glutamine (2)
Isoleucine (2)
Lysine (2)
Lyso-PC(16:0) (2)
Methionine (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Oxoglutarate (2)
Phenylalanine (2)
Taurocholic acid (2)
(+)-Plicamine (1)
(+)-Prosopinine (1)
(+/-)5-HEPE (1)
(+/-)5-HEPE / 5(S)-HEPE (1)
(11Z,14Z)-icosadienoic acid (1)
(13Z,16Z)-docosadienoic acid (1)

First Public Date

2019 (2)
2014 (2)

Modelling Approach

Ordinary differential equation model (1)
Population model (1)

Lab affiliation

CNIO (2)
Department of Physiology, Faculty of Pharmacy, University of Valencia, Burjassot, Valencia, Spain (2)
European Institute of Oncology, Milan (2)
Instituto de Investigaciones Marinas (IIM-CSIC) (2)
Programa de Genómica Funcional de Procariontes, Centro de Ciencias Genómicas-UNAM. Av. Universidad s/n, Col. Chamilpa, Cuernavaca, Morelos. CP 62210. México. (2)
Section of Paediatric Infectious Diseases, Faculty of Medicine, Imperial College London, UK (2)
Spanish National Cancer Research Center (CNIO) (2)
University of Cologne, Germany (2)
1. Gene Regulation, Stem Cells and Development group, PTS, Granada GENyO, Pfizer-University of Granada-Andalusian Regional Government Centre for Genomics and Oncological Research, Avenida de la Ilustración 114, 18016 Granada, Spain. 2. Department of Biochemistry and Molecular Biology I, Faculty of Science, University of Granada, Avenida Fuentenueva s/n, 18071 Granada, Spain. 3. Instituto de Investigación Biosanitaria ibs.GRANADA, Granada, Spain. (1)
Assistant professor Division of Biology and Medicine, Brown University, Providence, RI 02903, USA Center for Cancer Research Development, Proteomics Core Facility, Rhode Island Hospital, Providence, RI 02903, USA (1)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany (1)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (1)
Biology, Microbiology (1)
Breast Cancer Clinical Research Unit, CNIO, Spanish National Cancer Research Centre, Spain (1)
CECAD Forschungszentrum, Joseph-Stelzmann-Str. 26, 50931 Köln (1)
Cardiovascular Proteomics Laboratory. Centro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid, Spain (1)
Cardiovascular Proteomics Laboratory. Centro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid, Spain. (1)
Cardiovascular proteomics group, Spanish National Center for Cardiovascular Research (CNIC), Madrid, 28028, Spain (1)
Center for Synthetic Microbiology (SYNMIKRO) & Department of Chemistry, Philipps-University Marburg, Marburg, Germany (1)
Centre for Genomic Regulation, Barcelona Institute of Science and Technology (BIST), Barcelona 08003, Spain (1)
Department of Anatomy and Comparative Pathology and Toxicology, Pathology and Immunology Group (UCO-PIG), UIC Zoonosis y Enfermedades Emergentes ENZOEM, University of Córdoba, International Excellence Agrifood Campus ‘CeiA3’, 14014 Córdoba, Spain (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Department of Biomedical Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Denmark (1)
Department of Cellular Biology and Immunology, Lab 201, IPBLN-CSIC, Granada, Spain. (1)
Department of Cellular and Molecular Medicine, Centro de Investigaciones Biológicas (CIB-CSIC), Madrid, Spain (1)
Department of Genetics and Evolution, Federal University of São Carlos, São Carlos, Brazil. (1)
Department of Medicine (1)
Department of Pathology and Conservative Dentistry. Faculty of Dentistry. Centre for Biomedical Research and Innovation (CIIB). Periodontal Research Laboratory. University of the Andes, Santiago, Chile (1)
Department of Peptide-based Immunotherapy, Institute of Immunology, University and University Hospital Tübingen, Tübingen, BW, Germany (1)
Department of Pharmacology, University of Virginia School of Medicine, Charlottesville, Virginia 22908, USA (1)