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GenomicsGenome-wide analysis of the RNA polyemerase I trascription factor UBF1/2 binding in mouse and human cell lines.
We report ChIP-Seq analysis of the RNA polyemerase I trascription factor UBF1/2 in NIH3T3, HMEC and HMLER cell lines.
ORGANISM(S): Mus musculus Homo sapiens 
2014-11-14 | GSE63255 | GEO
GenomicsGenome-wide analysis of the RNA polyemerase I trascription factor UBF1/2 binding in mouse and human cell lines.
We report ChIP-Seq analysis of the RNA polyemerase I trascription factor UBF1/2 in NIH3T3, HMEC and HMLER cell lines. NIH3T3* samples: We correlated UBF1/2 binding across the genome with that of RNA polemerase I (Pol I), RNA polemerase II (Pol II) and chromatin states in NIH3T3 cells We perfromed Ch...
ORGANISM(S): Mus musculus 
2014-11-14 | E-GEOD-63255 | biostudies-arrayexpress
TranscriptomicsControl of Virulence Gene Expression in Citrobacter rodentium by Trascription Factor RegA
Identification of the targets of RegA with and without bicarbonate stimulation by comparing RegA knockout to multicopy RegA transgenics. RegA is an AraC like transcription factor identified in a mutational screen for virulence genes in Citrobacter rodentium, an attaching and effacing pathogen that ...
ORGANISM(S): Citrobacter rodentium 
2010-05-19 | E-GEOD-12876 | biostudies-arrayexpress
GenomicsCitrobacter rodentium
Control of Virulence Gene Expression in Citrobacter rodentium by Trascription Factor RegA
PRJNA111057 | ENA
TranscriptomicsControl of Virulence Gene Expression in Citrobacter rodentium by Trascription Factor RegA
Identification of the targets of RegA with and without bicarbonate stimulation by comparing RegA knockout to multicopy RegA transgenics. RegA is an AraC like transcription factor identified in a mutational screen for virulence genes in Citrobacter rodentium, an attaching and effacing pathogen that c...
ORGANISM(S): Citrobacter rodentium 
2008-09-22 | GSE12876 | GEO
TranscriptomicsTranscription profiling of Arabidopsis reveals Flg22 regulates MAP kinase 6 interaction with an ethylene response factor substrate via ethylene
Despite their importance, plant MAP kinase targets are still poorly elucidated. Here, the specific in vivo interaction of an ethylene response factor (ERF104) with the Arabidopsis MAP kinase, MPK6, is shown by fluorescence resonance energy transfer. The interaction, which is lost within minutes afte...
ORGANISM(S): Arabidopsis thaliana 
2009-05-27 | E-GEOD-11807 | biostudies-arrayexpress
TranscriptomicsGene expression data of fibroblasts with differential Gli1 expression in the colon.
The morphogen Indian Hedgehog is expressed by the intestinal epithelium and signals in paracrine manner to fibroblasts by activating trascription factor Gli1. ZsGreen is used to track Gli1+ cells. To describe different fibroblast subpopulations we used gp38 as a general marker and Sca1 as a marker e...
ORGANISM(S): Mus musculus 
2018-10-27 | GSE105069 | GEO
TranscriptomicsATAC-seq of mouse Embryonic Stem Cell (mESC) line-derived cells subjected or not to doxycycline (dox)-induced overexpression of transcription factors
The ATAC-seq is one of three readouts of an experiment carried out to assess the ability of different combinations of hematopoietic transcription factors to elicit the transdifferentiation of a mESC-derived non-hematopoietic cell type (vascular smooth muscle cells) into hematopoietic precursors upon...
ORGANISM(S): Mus musculus 
2023-05-08 | E-MTAB-12955 | biostudies-arrayexpress
TranscriptomicsRNA-seq of mouse Embryonic Stem Cell (mESC) line-derived cells subjected or not to doxycycline (dox)-induced overexpression of transcription factors (TFs)
The RNA-seq is one of three readouts of an experiment carried out to assess the ability of different combinations of hematopoietic transcription factors to elicit the transdifferentiation of a mESC-derived non-hematopoietic cell type (vascular smooth muscle cells) into hematopoietic precursors upon ...
ORGANISM(S): Mus musculus 
2023-05-15 | E-MTAB-12957 | biostudies-arrayexpress
TranscriptomicsEffect of ATF4 gene knockout on skeletal muscle mRNA levels in fasted mice.
ATF4 is a fasting-induced trascription factor that promotes skeletal muscle atrophy. The goal of these studies was to determine how of loss of ATF4 affects skeletal muscle mRNA expression. For additional details see Ebert et al, Stress-Induced Skeletal Muscle Gadd45a Expression Reprograms Myonuclei ...
ORGANISM(S): Mus musculus 
2012-09-15 | GSE39193 | GEO
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