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TranscriptomicsThe ß-importin KAP8 (Pse1/Kap121) is required for nuclear import of the cellulase transcriptional regulator XYR1, asexual sporulation and stress resistance in Trichoderma reesei
The ascomycete Trichoderma reesei is an industrial producer of cellulolytic and hemicellulolytic enzymes and also serves as a model for investigations on these enzymes and their genes. Most of them are obligatorily dependent on the Zn(II)Cys(VI) transcriptional activator XYR1. XYR1 is constitutively...
ORGANISM(S): Trichoderma reesei 
2015-03-03 | E-GEOD-59600 | biostudies-arrayexpress
TranscriptomicsArrayCGH of Trichoderma reesei strains QM9123, QM9414, NG14 and RutC-30
Trichoderma reesei is the main industrial producer of cellulases and hemicellulases used to depolymerize biomass in many biotechnical applications. Many production strains in use have been generated by classical mutagenesis. In this study we characterized genomic alterations in hyperproducing mutant...
ORGANISM(S): Hypocrea jecorina 
2010-11-26 | E-GEOD-19606 | biostudies-arrayexpress
TranscriptomicsDecoding the black box of cellulase formation in Hypocrea jecorina by RNA-Seq analysis
Hypocrea jecorina (anamorph Trichoderma reesei) is one of the most well studied fungi used in biotechnology industry. This fungus is today a paradigm for the comercial scale production of different plant cell wall degrading enzymes, mainly cellulases and hemicellulases. The objective of this study w...
ORGANISM(S): Trichoderma reesei 
2014-04-01 | E-GEOD-53629 | biostudies-arrayexpress
TranscriptomicsTrichoderma reesei QM6a CGH self hybridization
We perform a self hybridisation comprative genomic hybridization (CGH) in order to validate the probe tiling design we done on Trichoderma reesei. This hybridization was done using QM6a wild type strain. One biological replicate
ORGANISM(S): Hypocrea jecorina 
2010-06-23 | E-GEOD-17752 | biostudies-arrayexpress
TranscriptomicsTranscriptome during shift of Trichoderma reesei from mycelial growth to asexual sporulation
The asexual spore or conidium plays a critical role in the life cycle of many filamentous fungi, being the primary means for dispersion in the environment. To investigate the transcriptional changes taking place during the sporulation phase in T. reesei, which culminates with the production of the c...
ORGANISM(S): Hypocrea jecorina 
2011-12-08 | E-GEOD-27471 | biostudies-arrayexpress
TranscriptomicsSystemic analysis of lactose metabolism in Trichoderma reesei identifies a lactose permease that is essential for cellulase induction
Lactose (1,4-0-M-CM-^_-d-galactopyranosyl-d-glucose), a by-product from cheese manufacture or whey processing industries, is known to induce the formation of plant biomass hydrolyzing enzymes needed for the biorefinery industry in the fungus Trichoderma reesei, but the reason for this induction and...
ORGANISM(S): Trichoderma reesei 
2013-06-30 | E-GEOD-39276 | biostudies-arrayexpress
ProteomicsMulti-omics reveals protein kinase A as a regulator of lignocellulolytic response in Trichoderma reesei
This dataset contains label-free quantitative proteomics and phosphoproteomics data from the filamentous fungus Trichoderma reesei, comparing the parental strain QM9414 and a Δpkac1 mutant (catalytic subunit of protein kinase A). Cultures were harvested after 24 h growth under glucose and sugarcane ...
ORGANISM(S): Trichoderma reesei QM9414 
2026-09-14 | PXD072673 | Pride
Protein kinase a  trichoderma reesei  lignocellulose  sugarcane bagasse  bottom-up proteomics  phosphoproteomics  label-free quantification  titanium dioxide (tio₂) enrichment  liquid chromatography–tandem mass spectrometry. 
ProteomicsDiscovery of a novel antifungal compound, ilicicolin K, through genetic activation of the ilicicolin biosynthetic pathway in Trichoderma reesei
In the quest to discover novel antifungal agents and new antifungal production processes, we investigated the biosynthetic gene cluster (BGC) for ilicicolin H in the fungus Trichoderma reesei. While the BGC is silent under standard cultivation conditions, we achieved to activate it by over-expressi...
ORGANISM(S): Trichoderma reesei 
2025-03-13 | PXD055742 | Pride
Multi-omics Fungi Natural products 
ProteomicsBurger_et_al_ilicicolin_metabolomics
In this study, the ilicicolin biosynthetic gene cluster (BGC) in Trichoderma reesei was genetically activated, and a series of gene cluster enzyme deletions were performed. Mycelia were harvested and subjected to polar extraction. The resulting polar extracts were analyzed using an untargeted lipido...
ORGANISM(S): Trichoderma Reesei (ncbitaxon:51453) 
MSV000095813 | MassIVE
TranscriptomicsComparative analysis of the Trichoderma reesei transcriptome during growth on the cellulase inducing substrates wheat straw and lactose
We have examined and compared the transcriptome of T. reesei growing on wheat straw and lactose as carbon sources under otherwise similar conditions. Gene expression on wheat straw exceeded that on lactose, and 1619 genes were found to be only induced on wheat straw but not on lactose. They compris...
ORGANISM(S): Trichoderma reesei QM9414 
2013-09-17 | E-GEOD-46155 | biostudies-arrayexpress
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