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TranscriptomicsArgonaute and Trimmer generate Dicer-independent priRNAs and nucleate RNAi
RNA interference is involved in silencing of transposable and repetitive elements. How these elements are initially recognized by RNAi is a fundamental and unanswered question. We previously identified a class of Dicer-independent small RNAs, called primal small RNAs (priRNAs), in fission yeast. ...
ORGANISM(S): Schizosaccharomyces pombe 
2014-04-21 | E-GEOD-38636 | biostudies-arrayexpress
GenomicsH2A.Z inheritance during the cell cycle and its impact on promoter organization and dynamics [ChIP-seq]
While it has been clearly established that well positioned H2A.Z-containing nucleosomes flank the nucleosome depleted region (NDR) at the transcriptional start site (TSS) of active mammalian genes, how this chromatin-based information is transmitted through the cell cycle is unknown. We show here th...
ORGANISM(S): Mus musculus 
2012-11-23 | E-GEOD-41371 | biostudies-arrayexpress
TranscriptomicsaSyn polyA-RNAseq in PD and unaffected cortical brain samples
We sought to more precisely characterize the different alpha-synuclein (aSyn) 3M-bM-^@M-^YUTR mRNA species in normal and PD human brain. High-throughput, whole-transcriptome sequencing of the 3M-bM-^@M-^YUTR ends of polyadenylated mRNA transcripts (termed pA-RNAseq; see Methods) was performed on a ...
ORGANISM(S): Homo sapiens 
2012-10-04 | E-GEOD-40710 | biostudies-arrayexpress
ProteomicsKv2.1 IP dataset On_BeadMK8_2018
This project aimed to identify proteins copurifying with the Kv2.1 potassium channel from lysates prepared from crosslinked mouse brain homogenates. Comparison samples were prepared from Kv2.1 knockout mouse brains. Parallel immunopurifications were perfofmed for the unrelated Kv1.2 potassium chann...
ORGANISM(S): Mus musculus (Mouse) 
2023-08-30 | PXD044574 | Pride
Immunopurified Crosslinked Brain 
UnknownReach-scale river metabolism across contrasting sub-catchment geologies: Effect of light and hydrology.
Not available
S-EPMC5724700 | biostudies-literature
TranscriptomicsCharacterisation of p-hydroxycinnamate catabolism in a soil Actinobacterum
p-Hydroxycinnamates, such as p-coumarate and ferulate, are components of plant cell walls and have a number of commercial applications. Previously, we had shown that the soil Actinobacterium Rhodococcus jostii RHA1 (RHA1) grows on ferulate, catabolizing it via vanillate and the M-NM-2-ketoadipate pa...
ORGANISM(S): Rhodococcus jostii 
2014-09-28 | E-GEOD-56355 | biostudies-arrayexpress
UnknownHeadwater gas exchange quantified from O<sub>2</sub> mass balances at the reach scale.
Not available
S-EPMC6220971 | biostudies-literature
UnknownSkewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads.
Not available
S-EPMC4074385 | biostudies-literature
TranscriptomicsRNA sequencing of Mycobacterium abscessus under infection-relevant conditions
RNA sequencing (RNA-seq) of Mycobacterium abscessus in four infection-relevant culture conditions: hypoxic stress, artificial sputum medium, kanamycin-treated medium, and erythromycin-treated medium. Triplicate cultures of M. abscessus were grown in (1) Artificial Sputum media, (2) hypoxic condition...
ORGANISM(S): Mycobacterium abscessus 
2016-03-02 | E-GEOD-78787 | biostudies-arrayexpress
UnknownActive pathways of anaerobic methane oxidation across contrasting riverbeds.
Not available
S-EPMC6461903 | biostudies-literature
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