Tumor matrisome

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CHEBI ID

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CHEBI:134270 (2)
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PS(38:2) (1)
PS(38:1) (1)

First Public Date

2022 (5)
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Study type

Transcription profiling by array (365)
RNA-seq of coding RNA (44)
Unknown experiment type (15)
ChIP-seq (7)
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Human - High-throughput sequencing (1)
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RNA-seq of non coding RNA (1)

Release Date

2013 (53)
2012 (52)
2015 (47)
2011 (47)
2014 (44)
2008 (44)
2010 (41)
2007 (29)
2016 (27)
2009 (22)
2022 (18)
2025 (13)
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2023 (11)
2021 (11)
2020 (11)
2019 (11)
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2017 (7)
2006 (7)
2005 (7)
2018 (6)

Lab affiliation

Department of Physiology and Biophysics, University of Illinois at Chicago (2)
Biotech Research and Innovation Centre (BRIC), University of Copenhagen (UCPH), Copenhagen, Denmark (1)
Chemistry Institute, LADETEC, Proteomics Laboratory, UFRJ, RJ, Brazil. (1)
Department of Biochemistry University of Turku Turku, FINLAND (1)
Department of Biochemistry, University of Turku, Turku, FINLAND (1)
Department of Biochemistry, University of Turku, Turku, Finland (1)
Department of Biomedical Engineering, Tufts University (1)
Department of Biomedical Engineering, Tufts University, United States (1)
Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Department of Life Technologies University of Turku Turku, Finland (1)
Department of Physiology and Biophysics, University of Illinois Chicago (1)
Dept. of Biochemistry, Center for Biomedical Mass Spectrometry, Boston University 2Bioinformatics Program, Boston Universty (1)
Erasmus MC (1)
Experimental Systems Immunology Laboratory, Max Planck Institute of Biochemistry, Martinsried, Germany Institute of Innate Immunity, Department of Systems Immunology and Proteomics, Medical Faculty, University of Bonn, Germany (1)
Experimental Systems Immunology Laboratory, Max Planck Institute of Biochemistry, Martinsried, Germany Institute of Innate Immunity, Department of Systems Immunology and Proteomics, Medical Faculty, University of Bonn, Germany (lab head) (1)
INSERM U1068/UMR7258 CNRS - Cancer Research Center of Marseille "Pancreatic Cancer" Team Group leader of the "Microenvironment and inter-cellular dialogue" Parc Scientifique de Luminy, 163 avenue de Luminy, case 915, 13288 Marseille Cedex 9 FRANCE (1)
Institute for Tumor Biology and Experimental Therapy Georg-Speyer-Haus 60596 Frankfurt/Main Germany (1)
Institute for Tumor Biology and Experimental Therapy Georg-Speyer-Haus 60596 Frankfurt/Main Germany (1)
Laboratory of Lymphoid Organ Development Division of Experimental Oncology San raffaele Scientific Institute Via Olgettina, 60 20132 Milan (Italy) (1)
Neuropathologist, Department of Pathology, University Health Network Assistant Professor, Department of Laboratory Medicine and Pathobiology, University of Toronto Scientist, Princess Margaret Cancer Centre (1)
Reader In Cell Signalling & Proteomics, Barts Cancer Institute (1)
The University of Melbourne (1)
Urological Research Institute DiBit2, Scientific Institute San Raffaele Via Olgettina 60, 20132 Milan - Italy Tel: +39-02-2643.6351; Fax. +39-02-2643.5659 (1)
i3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal Ipatimup - Instituto de Patologia e Imunologia Molecular da Universidade do Porto, Porto, Portugal (1)

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The matrisome: in silico definition and in vivo characterization of tumor extracellular matrix

Naba A, Clauser KR, Hoersch S, Liu H, Carr SA, Hynes RO. Mol Cell Proteomics 2012, 11: M111.014647. doi:10.1074/mcp.M111.014647. PMCID:PMC3322572. Tranche_hash:onoKvMCC9umP0dW2GlZSGN/DVfz6tqoyRvsA16h351RjGJZiqjk0wWGYQB9+zPpRj+ASAgKsd779N0Td4250FCPJ6jUAAAAAAABFoQ==

2013-11-20 | MSV000078494 | MassIVE

Proteomic analysis of matrisome proteins from laser capture microdissected FFPE tissue slides of HnSCC xenograft

Liquid chromatography mass spectrometry was used to study tumor matrisome from laser capture microdissected FFPE tissue sections of human neck and squamous cell carcinoma (HnSCC) xenograft grown in mouse.

ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse)

2023-10-21 | PXD033023 | Pride

Temporal Profiling of PyMT Tumour Matrisome during Progression

In this study, through coupling of our ISDoT tissue decellularisation technology with quantitative mass spectrometry, we explored the changing tumour matrisome during mammary tumourigenesis in the PyMT breast cancer model compared to age-matched healthy control mammary gland

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2022-03-30 | MSV000089167 | MassIVE

Pan-cancer analysis connects tumor matrisome to immune response.

Not available

S-EPMC6531473 | biostudies-literature

The Burden of Post-Translational Modification (PTM)-Disrupting Mutations in the Tumor Matrisome.

Not available

S-EPMC7959462 | biostudies-literature

Proteomic identification of a gastric tumor ECM signature associated with cancer progression

The extracellular matrix (ECM) plays an undisputable role in tissue homeostasis and its deregulation leads to altered mechanical and biochemical cues that impact cancer development and progression. Herein, we undertook a novel approach to address the role of gastric ECM in tumorigenesis, which remai...

ORGANISM(S): Homo sapiens (Human)

2022-05-20 | PXD029782 | Pride

Proteomics Gastric cancer Matrisome Extracellular matrix Biomarker

Pan-Cancer analysis of the expression and regulation of matrisome genes across 32 tumor types.

Not available

S-EPMC7852311 | biostudies-literature

Matrisome gene expression in treatment-naïve and chemotherapy-treated primary tumor and metastatic tissues of high-grade serous ovarian carcinoma

PRJNA725488 | ENA

Neoplastic-stromal cell crosstalk regulates matrisome expression in pancreatic cancer

PRJNA649774 | ENA

The Matrisome Genes From Hepatitis B-Related Hepatocellular Carcinoma Unveiled.

Not available