Two-stage system

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Unknown (4167)
Transcriptomics (1487)
Proteomics (834)
Genomics (629)
Metabolomics (68)
Clinical (12)
Genomic (10)
Models (5)
Other (4)
Methylation profiling (2)

Organisms

Homo sapiens (410)
Mus musculus (275)
Caenorhabditis elegans (108)
Arabidopsis thaliana (82)
Drosophila melanogaster (61)
Danio rerio (49)
Oryza sativa (40)
Bos taurus (33)
Rattus norvegicus (30)
Zea mays (26)
Hordeum vulgare (22)
Gallus gallus (22)
Xenopus laevis (19)
Plasmodium falciparum (19)
Glycine max (17)
Oryza sativa Japonica Group (15)
Triticum aestivum (15)
Vitis vinifera (14)
Sus scrofa (14)
Solanum lycopersicum (8)
Ciona intestinalis (7)
Salmo salar (7)
Medicago truncatula (6)
Apis mellifera (6)
Plasmodium falciparum 3D7 (6)
Staphylococcus aureus (6)
Saccharomyces cerevisiae (6)
Macaca mulatta (5)
Hordeum vulgare subsp. vulgare (5)
Chordata (1)

Organisms

Mus musculus (108)
Homo sapiens (79)
Arabidopsis thaliana (18)
Danio rerio (16)
Drosophila melanogaster (14)
Gallus gallus (7)
Plasmodium falciparum (6)
Sus scrofa (5)
Oryza sativa (5)
Bos taurus (5)
Xenopus laevis (4)
Caenorhabditis elegans (4)
Rattus norvegicus (4)
Oryza sativa Japonica Group (4)
Parhyale hawaiensis (3)
Brassica napus (3)
Phytophthora sojae strain P6497 (2)
Plasmodium (2)
Agrobacterium tumefaciens (2)
Chlamydia trachomatis (2)
Coturnix japonica (2)
Gossypium hirsutum (2)
Oncorhynchus mykiss (2)
activated sludge metagenome (2)
Glycine max (2)
Canis lupus familiaris (2)
anaerobic digester metagenome (2)
Sorghum bicolor (2)
Parachlamydia acanthamoebae UV-7 (1)
Xenopus andrei (1)

Repository

biostudies-arrayexpress (1455)
pride (795)
ENA (508)
geo (139)
MetaboLights (68)
EGA (22)
MassIVE (15)
dbGaP (10)
iProX (8)
jPOST (6)
BioModels (5)
PAXDB (3)
PeptideAtlas (3)
GPMDB (1)
PanoramaPublic (1)

Tissue

Cell culture (125)
Epithelial cell (48)
Brain (44)
Plant cell (24)
Whole body (21)
Leaf (21)
Permanent cell line cell (20)
Kidney (19)
Blood plasma (17)
Blood (17)
Blood serum (16)
Root (16)
Embryo (16)
Fibroblast (14)
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Cerebrospinal fluid (11)
Heart (11)
Cell suspension culture (11)
B cell (11)
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Oocyte (9)
Erythrocyte (9)
Embryonic stem cell (8)
HeLa cell (8)
Skeletal muscle (7)
Testis (7)
T cell (7)
Breast (1)

Disease

Normal (13)
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Amyotrophic lateral sclerosis (4)
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Cancer (2)
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Ovarian tumor (2)
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Congential heart disease (1)
Lymph node metastasis (1)
Peripheral neuropathy (1)
Nondiabetic (1)
T. circumcincta infection (1)
Whitehart (1)
Acute Lymphoblastic Leukaemia (1)
Blumeria graminis hordei (powdery mildew) inoculation (1)
Control exposed to non-pathogenic DSM-350 (1)
Hign immune pressure (1)
No local recurrence (1)
Oligodendroglioma (1)
Dukes D primary colon cancer (1)
Mock infected (1)
Giant cell glioblastoma (1)
Bronchioloalveolar carcinoma of lung (1)
Colon cancer metastasis (1)
Infected (1)
ARR1-SRDX (1)
Metarhizium anisopliae infected (1)
IBDV infected (1)
Serous ovarian cancer (1)

Technology Type

Mass Spectrometry (795)
Shotgun proteomics (442)
Bottom-up proteomics (175)
Data-dependent acquisition (88)
Affinity purification coupled with mass spectrometry proteomics (88)
Data-independent acquisition (65)
Mass spectrometry (51)
Gel-based experiment (46)
SWATH MS (24)
Top-down proteomics (18)
Chemical cross-linking coupled with mass spectrometry proteomics (17)
DiaPASEF (16)
Mass spectrometry assay (14)
HDMSE (8)
SRM/MRM (6)
Affinity proteomics (4)
MSE (4)
NMR spectroscopy assay (2)
NMR spectroscopy (2)
Metaproteomics (2)
Illumina HiSeq 4000, ILLUMINA (1)
Illumina HiSeq 2500, ILLUMINA (1)
Complete Genomics (1)
Illumina MiSeq, 454 GS FLX Titanium (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
Immunopeptidomics (1)

Instrument Platform

Illumina HiSeq 2000 (29)
Illumina NovaSeq 6000 (28)
Illumina HiSeq 4000 (17)
NextSeq 500 (17)
Illumina HiSeq 2500 (13)
ScanArray 5000 [PerkinElmer] (7)
Scanning hardware (7)
Illumina MiSeq (6)
NextSeq 550 (6)
Axon- GenePix4000B (5)
Ultracentrifuge (4)
Spectronic Helios Alpha UV-Vis spectrophotometer (4)
Illumina Genome Analyzer IIx (4)
Illumina Genome Analyzer (3)
Chromium 10x (2)
ScanArray scanning hardware (2)
Generation III Scanner (2)
Illumina Genome Analyzer II (2)
Illumina NovaSeq X (2)
Illumina HiSeq 1500 (2)
Illumina HiSeq 3000 (2)
IPK PhenoSphere (1)
Scanpy (hash 98de5d1a) (1)
Chromium Next GEM Single Cell 5' Reagent Kits (10x Genomics) (1)
10xGenomics Chromium 3'v3 (1)
CryoStor® CS10 Freezing Medium (Cat. No. 100-1061; StemCell Technologies) (1)
Nanodrop 2000c spectrophotometer (1)
Chromium Single Cell 3’ Reagent kits v2 (1)
Maxwell 16, Promega (1)
HiScan, Illumina (1)

Publication Date

2010 (221)
2013 (177)
2011 (165)
2025 (158)
2012 (158)
2015 (157)
2026 (152)
2014 (142)
2023 (131)
2022 (123)
2024 (114)
2008 (99)
2016 (98)
2021 (94)
2020 (90)
2009 (90)
2019 (75)
2007 (64)
2018 (61)
2017 (54)
2006 (37)
2005 (24)
2004 (8)
2003 (1)

UNIPROT ID/AC

CAMT_MYCTU (3)
O06238_MYCTU (3)
I6XFB7_MYCTU (3)
O53319_MYCTU (3)
I6XG43_MYCTU (3)
O05592_MYCTU (3)
Q6MX34_MYCTU (3)
PSTS3_MYCTU (3)
RL24_MYCTU (3)
I6YC91_MYCTU (3)
RBPA_MYCTU (3)
ILVX_MYCTU (3)
I6Y778_MYCTU (3)
FER_MYCTU (3)
Y2302_MYCTU (3)
EFG_MYCTU (3)
L7N673_MYCTU (3)
RNJ_MYCTU (3)
O53443_MYCTU (3)
LPPP_MYCTU (3)
PEPE_MYCTU (3)
I6X7P2_MYCTU (3)
ACDP_MYCTU (3)
ATPE_MYCTU (3)
Y1220_MYCTU (3)
O53534_MYCTU (3)
P96821_MYCTU (3)
P71750_MYCTU (3)
TRPC_MYCTU (3)
REGX3_MYCTU (3)

ENSEMBL ID

ENSG00000176092 (1)
ENSG00000147251 (1)
ENSG00000247315 (1)
ENSG00000170477 (1)

CHEBI ID

CHEBI:30769 (19)
CHEBI:15741 (17)
CHEBI:15428 (16)
CHEBI:28842 (14)
CHEBI:16865 (14)
CHEBI:15756 (14)
CHEBI:16335 (14)
CHEBI:25017 (14)
CHEBI:17568 (13)
CHEBI:16704 (12)
CHEBI:16750 (12)
CHEBI:17754 (12)
CHEBI:17368 (12)
CHEBI:18237 (12)
CHEBI:28044 (12)
CHEBI:30746 (11)
CHEBI:17895 (11)
CHEBI:17295 (11)
CHEBI:18012 (11)
CHEBI:6650 (11)
CHEBI:17154 (11)
CHEBI:30805 (10)
CHEBI:30763 (10)
CHEBI:16196 (10)
CHEBI:18300 (10)
CHEBI:17053 (10)
CHEBI:26078 (10)
CHEBI:17351 (10)
CHEBI:16414 (10)
CHEBI:17148 (10)

Metabolite Name

Guanosine (14)
Hypoxanthine (13)
Phenylalanine (11)
Uracil (11)
Adenosine (11)
Leucine (10)
Betaine (10)
Citric acid (10)
Inosine (10)
Nicotinamide (9)
Glutamine (9)
Adenine (9)
L-Phenylalanine (9)
Xanthine (9)
Spermidine (8)
Alanine (8)
Guanine (8)
Glycine (8)
Cytidine (8)
Uridine (8)
Sucrose (8)
Valine (7)
Benzoic acid (7)
L-Tyrosine (7)
Lysine (7)
Asparagine (7)
Oleic acid (7)
Linoleic acid (7)
Dodecanoic acid (7)
Myristic acid (7)

First Public Date

2014 (111)
2024 (49)
2023 (49)
2026 (48)
2025 (47)
2022 (39)
2020 (30)
2021 (27)
2018 (25)
2019 (22)
2013 (17)
2016 (16)
2017 (15)
2015 (13)

Modelling Approach

Ordinary differential equation model (5)

Study status

Not provided (3)
Recruiting (3)
Completed (2)
Enrolling by invitation (1)
Suspended (1)
Active, not recruiting (1)
Terminated (1)

Lab affiliation

NCI/NIH CSB (10)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (8)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (6)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (6)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (6)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (5)
Department of Molecular and Cellular Neurobiology, Center for Neurogenomics & Cognitive Research, Neuroscience Campus Amsterdam, VU University, Amsterdam, The Netherlands (5)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (5)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (5)
Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, SE-751 23 Uppsala, Sweden. (4)
Molecular Genetics, RPTU Kaiserslautern, Germany (4)
Department of Cell & Developmental Biology, University of California, San Diego, La Jolla, CA (3)
Aarhus University Department of Biomedicine DK-8000 Aarhus C (3)
Chronic Disease Programme (UFIEC), Instituto de Salud Carlos III, 28220 Majadahonda, Madrid, Spain (3)
III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (3)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS) (3)
Aarhus University Department of Biomedicine DK-8000 Aarhus (3)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (3)
Systems Biology Ireland, University College Dublin (3)
Molecular Biology and the Lewis-Sigler Institute for Integrative Genomics, Princeton University, USA (3)
Department of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA, USA. (2)
Proteomics, Max Planck Institute of Biophysics, Frankfurt am Main, Germany (2)
NREL (2)
Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA (2)
Institute of Biology II, University of Freiburg, Freiburg, Germany (2)
Department of Chemical and Systems Biology, Institute of Infectious Disease and Molecular Medicine, Faculty of Health Sciences, University of Cape Town, South Africa (2)
Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences (2)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark (2)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Parkville, Victoria 3010, Australia. (2)
Centre for Gene Regulation and Expression, Sir James Black Centre, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH. UK. (2)

Keyword

Leucovorin (2)
Fluorouracil (2)
Oxaliplatin (2)
Oncolytic Vaccinia Virus (1)
Tumor Cell Death (1)
Viral Therapy (1)
Anti-Tumor Immunity (1)
Pfizer SARS-CoV-2 Vaccine BNT162b2, Moderna SARS-CoV-2 Vaccine, Novavax COVID-19 Vaccine NVX-CoV2373 (1)
Low Rectal Cancer (1)
MERCURY (1)
Circumferential Margin (1)
Biofeedback (1)
Wheat germ juice (1)
Obstructive left-sided colonic cancer (1)
Colorectal stent (1)
Intraoperative colon lavage (1)
Lavage (1)
CRM (1)
Radiology (1)
Abdominoperineal Excision (1)
Anterior Resection (1)
Relaxation (1)
Tumor resection (1)
Lymphocytic density (1)
CD3 (1)
CD45RO (1)
Genetic feature of the tumor (1)
Image analysis software (1)
Neuropathy (1)
Immunoscore (1)

IsPrivate

False (5)

Submitter Keywords

Immuno-oncology (1)

Classification

protozoa (12)
bacteria (10)
helminths (4)
viruses (1)

Modification

4x(15)N labeled L-arginine (7)
2x(15)N labeled L-lysine (5)
N6 (4)
N6-dimethyl-L-lysine (2)
4-tetrahydrothiazine-3-carboxylic acid (2)
0.984016 (1)
15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (909)
RNA-seq of coding RNA (210)
ChIP-seq (68)
ChIP-chip by tiling array (48)
RNA-seq of non coding RNA (26)
Comparative genomic hybridization by array (23)
Unknown experiment type (22)
Transcription profiling by tiling array (22)
Methylation profiling by array (19)
RNA-seq of coding RNA from single cells (17)
ChIP-chip by array (14)
Other (9)
DNA-seq (8)
Transcription profiling by SAGE (7)
Methylation profiling by high throughput sequencing (7)
Genotyping by array (5)
MicroRNA profiling by high throughput sequencing (4)
MicroRNA profiling by array (4)
RNAi profiling by array (3)
Transcription profiling by RT-PCR (3)
Single nucleus RNA sequencing (3)
Proteomic profiling by array (3)
RNA-seq of total RNA (3)
Plant - High-throughput sequencing (2)
High-throughput sequencing (2)
Animal - High-throughput sequencing (2)
ScATAC-seq (2)
Baseline (1)
MicroRNA profiling by high-throughput sequencing (1)
Cell line - High-throughput sequencing (1)

Release Date

2022 (505)
2023 (495)
2025 (484)
2021 (454)
2024 (368)
2020 (354)
2019 (280)
2014 (278)
2010 (266)
2013 (256)
2018 (252)
2015 (243)
2016 (223)
2017 (222)
2011 (218)
2012 (213)
2009 (127)
2008 (127)
2007 (76)
2026 (63)
2006 (50)
2005 (34)
2004 (15)
2003 (6)
2002 (3)
2001 (3)
1998 (3)
1999 (2)
2000 (1)
1997 (1)

Location

Egypt (2)
United Kingdom (2)
United States (2)
Serbia (1)
Chile (1)
Israel (1)
Australia (1)
China (1)
Germany (1)
France (1)

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On-Farm Two-stage Anaerobic Digestion System

On-Farm Two-stage Anaerobic Digestion System Metagenome

PRJNA1019618 | ENA

Rapid Analyses of Proteomes and Interactomes Using an Integrated Solid-Phase Extraction-Liquid Chromatography-MS/MS System.

Data from ProteomeXchange, PXD ID: PXD001111. Experiment: NYLON_Hela, file: OR7_20130627_NB_Nylon_Hela_1ug_top20_1.mzml. Published as part of J Proteome Res. 2014 Dec 8 . From the Abstract: {{i}} Here, we explore applications of a LC system using disposable solid-phase extraction (SPE) cartridges a...

ORGANISM(S): Homo_sapiens_viruses, Human_female

GPM32310005326 | GPMDB

Resource Reanalysis

biological samples of two stage PN-A system

PRJNA979962 | ENA

Hydrogen mediated biogas upgrading in a two-stage system after two years of operation

PRJNA422374 | ENA

Metagenomic insights into a two-stage A/O-MBBR system with multiple chambers

PRJNA860726 | ENA

Two-stage optical system for colorectal polyp assessments.

Not available

S-EPMC4710666 | biostudies-literature

Azo dye biodegradation in multiple-stage reactor systems

Microbial communities involved in the biodegradation of an azo dye in a two-stage AD system

PRJEB52299 | ENA

The obligate intracellular bacterium Orientia tsutsugamushi differentiates into a developmentally distinct extracellular state

Orientia tsutsugamushi (Ot) is an obligate intracellular bacterium in the family Rickettsiaceae that causes scrub typhus, a severe mite-borne human disease. Ot is unusual amongst Rickettsiaceae in budding out of infected cells in a process resembling that used by enveloped viruses. Here, we show tha...

ORGANISM(S): Orientia Tsutsugamushi

2022-05-11 | PXD028218 | JPOST Repository

Sequencing of a two-stage biotrickling filter system removing off-gas produced in a WWTP

PRJNA516590 | ENA

Eco-efficiency evaluation of Chinese provincial industrial system: A dynamic hybrid two-stage DEA approach.

Not available

S-EPMC9355237 | biostudies-literature

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7218 Results

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