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TranscriptomicsTranscription profiling of E. coli grown on mixture of glucose and lactose in a time series
Time series analysis of glucose-lactose diauxie; When cultured on a mixture of glucose and lactose, E. coli grows preferentially on glucose until it is exhausted, resulting in growth arrest while the cells adjust to growth on lactose, i.e., diauxie.
ORGANISM(S): Escherichia coli 
2006-11-27 | E-MEXP-918 | biostudies-arrayexpress
TranscriptomicsRNA-Induced Silencing Complex-associated RNA in MRC-5 cells transfected with hcmv-miR-UL22A-5p
Investigation of mRNA targets of the human cytomegalovirus miRNA UL22A-5p One 4-plex chip was hybridized with cDNA originating from either total RNA or from AGO2-associated RNA (i.e. RISC-associated RNA) from fibroblasts transfected 48 hours earlier with hcmv-miR-UL22A-5p mimic or with a negative co...
ORGANISM(S): Homo sapiens 
2015-04-08 | E-GEOD-64503 | biostudies-arrayexpress
UnknownSuperinfection exclusion in duck hepatitis B virus infection is mediated by the large surface antigen.
Not available
S-EPMC446106 | biostudies-literature
TranscriptomicsThe PerA regulon in Enterococcus faecalis
Transcriptional profiling of E. faecalis E99 WT and an isogenic ΔperA strain grown in THB + 1% glucose. Pathogenic E. faecalis are enriched for a pathogenicity island (PAI). This 150-kb island harbors a number of well characterized virulence genes plus a number of determinants of unknown function i...
ORGANISM(S): Enterococcus faecalis 
2012-08-16 | E-GEOD-31538 | biostudies-arrayexpress
TranscriptomicsCarbon nutrition of pathogenic and commensal E. coli
Transcriptome profiling of E. coli MG1655, E. coli EDL933, E. coli ECOR26, and E. coli Nissle 1917 grown on mouse cecal mucus as carbon source The carbon sources that support growth of pathogenic E. coli O157:H7 in the mammalian intestine have not previously been investigated. In vivo, pathogenic E...
ORGANISM(S): Escherichia coli 
2008-04-25 | E-GEOD-11254 | biostudies-arrayexpress
TranscriptomicsUnexpected complexity of the Escherichia coli K-12 transcriptome architecture revealed by single nucleotide resolution RNA sequencing
To investigate the architecture of the E. coli K-12 transcriptome, we used two RNA-Seq technologies to analyze strand-specific transcription at single-nucleotide resolution. We analyzed the data by using an organizational schema to annotate the promoters and terminators that define transcription uni...
ORGANISM(S): Escherichia coli K-12 
2014-07-08 | E-GEOD-52059 | biostudies-arrayexpress
TranscriptomicsRNA sequencing based analysis of the bacterial transcriptome
To investigate the architecture of the E. coli K-12 transcriptome, we used two RNA-Seq technologies to analyze strand-specific transcription at single-nucleotide resolution. We analyzed the data by using an organizational schema to annotate the promoters and terminators that define transcription uni...
ORGANISM(S): Escherichia coli BW38028 
2014-12-11 | E-GEOD-58556 | biostudies-arrayexpress
TranscriptomicsTranscriptome of an intestine-adapted Escherichia coli K-12 mutant selected by animal passage for superior colonization
Transcription profiling of wild type E. coli MG1655, intestine-adapted E. coli MG1655star, and E. coli MG1655 flhD mutant grown on glucose, mannose, and mucus. We previously isolated a spontaneous mutant of E. coli K-12, strain MG1655, following passage through the streptomycin-treated mouse intesti...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2010-11-04 | E-GEOD-25106 | biostudies-arrayexpress
TranscriptomicsThe Enterococcus faecalis V583 transcriptional profile during survival within macrophages
Transcriptional profiling of E. faecalis V583 during intracellular survival compared to V583 grown to mid-log phase (OD 600 = 0.05) in THB + 1% glucose. In this study we report the complete intracellular E. faecalis V583 transcriptome following infection of RAW264.7 macrophages. During intracellula...
ORGANISM(S): Enterococcus faecalis V583 
2011-12-21 | E-GEOD-34590 | biostudies-arrayexpress
UnknownUsing genetic variants to evaluate the causal effect of cholesterol lowering on head and neck cancer risk: A Mendelian randomization study.
Not available
S-EPMC8096036 | biostudies-literature
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