U box - OmicsDI

Show results for

Unknown (3014)
Transcriptomics (1269)
Genomics (98)
Proteomics (97)
Metabolomics (28)
Models (5)
Genomic (2)
Other (1)

Organisms

Homo sapiens (488)
Mus musculus (365)
Arabidopsis thaliana (52)
Drosophila melanogaster (45)
Saccharomyces cerevisiae (34)
Rattus norvegicus (32)
Schizosaccharomyces pombe (21)
Streptococcus pneumoniae D39 (16)
Gallus gallus (14)
Caenorhabditis elegans (13)
Danio rerio (11)
Bos taurus (10)
Sus scrofa (10)
Bacillus amyloliquefaciens (7)
Hordeum vulgare (7)
Ovis aries (7)
Staphylococcus aureus (6)
Macaca mulatta (5)
Toxoplasma gondii (5)
Entamoeba histolytica (5)
Bacillus subtilis (5)
Mycobacterium tuberculosis (5)
Xenopus laevis (4)
Escherichia coli (4)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (3)
Brassica napus (3)
Oryza sativa Indica Group (3)
Listeria monocytogenes (3)
Zea mays (3)
Campylobacter jejuni (3)

Organisms

Homo sapiens (6)
Mus musculus (5)
Arabidopsis thaliana (2)
Enterococcus faecium (1)
Medicago truncatula (1)
Danio rerio (1)
Drosophila melanogaster (1)
Oryza sativa (1)

Repository

biostudies-arrayexpress (1324)
pride (69)
MetaboLights (28)
ENA (24)
EGA (16)
geo (14)
MassIVE (10)
BioModels (5)
iProX (5)
jPOST (4)
dbGaP (2)
PAXDB (1)

Tissue

Cell culture (14)
Epithelial cell (5)
Colon epithelial cell (3)
Plant cell (3)
Colon (3)
SW-480 cell (2)
Colonic cancer cell line (2)
Heart (2)
Leaf (2)
Liver (2)
T cell (2)
Motoneuron (1)
Ventricular cardiac muscle cell (1)
Blood clot (1)
Phagocyte (1)
Pancreatic stellate cell (1)
Type B pancreatic cell (1)
LLC-PK1 cell (1)
Vero cell (1)
Bone cell (1)
Malignant cell (1)
Kidney cell (1)
Retina (1)
Embryonic stem cell (1)
Urine (1)
Skin (1)
Early embryonic cell (1)
Multipotent stem cell (1)
Cell suspension culture (1)
Embryo (1)

Disease

Normal (10)
Breast cancer (4)
Colon cancer (3)
Rheumatoid arthritis (2)
Osteosarcoma (2)
Diabetes mellitus (2)
Osteosarcoma (2)
CLL (1)
GIP-dependent Cushing's syndrome (1)
Osteosarcoma subtype fibroblastic (1)
Unspecified peripheral T-cell lymphoma (1)
T. circumcincta infection (1)
Colon cancer Dukes C (1)
Ischaemia reperfusion injury (1)
Blumeria graminis hordei (powdery mildew) inoculation (1)
Invasive Ductal Carcinoma (1)
Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus (1)
Infected (1)
Primary tumor (1)
Mock infected (1)
Colon adenocarcinoma (1)
Head and neck squamous cell carcinoma (1)
Mastitis (1)
Chronic myelogenous leukemia (1)
Renal cell carcinoma (1)
Chicken Anaemia Virus infected (1)
Glioblastoma (1)
Prostate carcinoma (1)
Carcinoma (1)
Diabetes mellitus type 2 (1)

Technology Type

Mass Spectrometry (69)
Mass spectrometry (26)
Bottom-up proteomics (22)
Shotgun proteomics (20)
Affinity purification coupled with mass spectrometry proteomics (13)
Data-dependent acquisition (12)
Data-independent acquisition (5)
Gel-based experiment (5)
SWATH MS (4)
Mass spectrometry assay (2)
Affinity proteomics (2)
Top-down proteomics (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
DiaPASEF (1)

Instrument Platform

Illumina NovaSeq 6000 (10)
Affymetrix Fluidics Station 400 (9)
Illumina HiSeq 2500 (9)
Illumina HiSeq 4000 (7)
Element AVITI (5)
ScanArray 5000 [PerkinElmer] (5)
Vortex (5)
Illumina MiSeq (4)
Illumina HiSeq 2000 (4)
G2565BA DNA microarray scanner [Agilent] (3)
Axon GenePix 4000B scanning hardware (3)
NextSeq 500 (3)
GenePix 4000A [Axon Instruments] (2)
Illumina HiSeq 1500 (2)
NextSeq 550 (2)
SnakePipes 3.4 (1)
NEBNext Ultra II DNA Library Prep Kit (1)
G2565BA DNA microarray scanner (1)
10X Chromium Controller (1)
Microcentrifuge (1)
BioChipReader (1)
VersArray ChipReader [Bio-Rad Laboratories] (1)
Agilent DNA Microarray Scanner Model #G2565BA (1)
Solexa 2G Genome Analyzer (1)
None (1)
Affymetrix GeneChip Scanner 3000 (GCS3000) (1)
Nanodrop N1000 spectrophotometer (1)
ScanArray scanning hardware (1)
Affymetrix GeneChip Scanner 3000 (1)
ScanArray [PerkinElmer] (1)

Publication Date

2010 (191)
2013 (161)
2015 (160)
2012 (156)
2014 (139)
2011 (135)
2007 (65)
2008 (63)
2016 (59)
2009 (58)
2005 (40)
2006 (32)
2025 (31)
2022 (28)
2020 (25)
2024 (23)
2026 (21)
2004 (18)
2021 (15)
2017 (11)
2023 (10)
2019 (9)
2018 (8)
2003 (1)

UNIPROT ID/AC

YORR_BACSU (1)
RHAB_BACSU (1)
YAAI_BACSU (1)
CBP1_BACSU (1)
YHFQ_BACSU (1)
ILVA_BACSU (1)
COTA_BACSU (1)
SP0J_BACSU (1)
LEPU_BACSU (1)
NIN_BACSU (1)
YWMC_BACSU (1)
YHCG_BACSU (1)
YOAV_BACSU (1)
YDZF_BACSU (1)
GLSA2_BACSU (1)
EX7L_BACSU (1)
NATR_BACSU (1)
YKUK_BACSU (1)
YXIB_BACSU (1)
YUKD_BACSU (1)
YHFS_BACSU (1)
YYAT_BACSU (1)
YIZA_BACSU (1)
GLXK_BACSU (1)
CIDA_BACSU (1)
YPUF_BACSU (1)
GUB_BACSU (1)
PSPA_BACSU (1)
YDBS_BACSU (1)
FLHP_BACSU (1)

CHEBI ID

CHEBI:15428 (9)
CHEBI:30769 (8)
CHEBI:17596 (8)
CHEBI:16027 (8)
CHEBI:6650 (8)
CHEBI:18089 (7)
CHEBI:15891 (7)
CHEBI:28867 (7)
CHEBI:16704 (7)
CHEBI:27897 (7)
CHEBI:16737 (7)
CHEBI:17368 (7)
CHEBI:25094 (7)
CHEBI:29016 (7)
CHEBI:28044 (7)
CHEBI:73004 (6)
CHEBI:72998 (6)
CHEBI:17191 (6)
CHEBI:72737 (6)
CHEBI:18050 (6)
CHEBI:16113 (6)
CHEBI:48430 (6)
CHEBI:17012 (6)
CHEBI:68433 (6)
CHEBI:9410 (6)
CHEBI:16525 (6)
CHEBI:17687 (6)
CHEBI:16359 (6)
CHEBI:17268 (6)
CHEBI:17568 (6)

Metabolite Name

Xanthine (5)
Polyethylene, oxidized (4)
Glycine (4)
Tetradecanedioic acid (4)
Hexadecanedioic acid (4)
Deoxyinosine (4)
Indolelactic acid (4)
Uric acid (4)
Canesceol (3)
Acetyl-L-tyrosine (3)
PG(16:0/0:0)[U] (3)
Theasapogenol E (3)
(2S,3'S)-alpha-Amino-2-carboxy-5-oxo-1-pyrrolidinebutanoic acid (3)
Dihydronaringenin-O-sulphate (3)
2-Dodecylbenzenesulfonic acid (3)
25-Acetylvulgaroside (3)
Cucurbic acid (3)
(S)-Nerolidol 3-O-[a-L-rhamnopyranosyl-(1->2)-b-D-glucopyranoside] (3)
2-n-Propyl-4-oxopentanoic acid (3)
Tanacetol A (3)
Isodesmosine (3)
Myristoylglycine (3)
Corosin (3)
Ursodeoxycholic acid (3)
Carnosine (3)
2-hydroxyhexadecanoic acid (3)
13(S)-HpODE (3)
CMPF (3)
Cyclohexanecarboxylic acid (3)
Xanthosine (3)

First Public Date

2024 (6)
2014 (6)
2025 (3)
2019 (2)
2026 (1)
2023 (1)
2022 (1)
2021 (1)
2020 (1)
2018 (1)
2013 (1)

Modelling Approach

Ordinary differential equation model (5)

Lab affiliation

Head Proteomics Group, Leiden University Medical Center, Center for Proteomics and Metabolomics, PO Box 9600, Postal zone P1-Q, 2300 RC Leiden, The Netherlands (3)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås Norway (2)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (2)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (2)
Division of Immune Diversity, German Cancer Research Center, Im Neuenheimer Feld 280, 69120, Heidelberg, Germany & Division of Structural Biology of Infection and Immunity, German Cancer Research Center, Im Neuenheimer Feld 280, 69120, Heidelberg, Germany (1)
TSL (1)
University of Copenahgen, Copenhagen Center for Glycomics (1)
1 German Cancer Research Center (DKFZ), Heidelberg, Germany 2 Heidelberg University, Medical Faculty, Heidelberg, Germany (1)
Max-Planck of Biochemistry, Experimental Systems Immunology Germany (1)
Department of Biotechnology, University of Chemistry and Technology, Prague, 166 28 Prague, Czech Republic (1)
University of Graz and BioTechMed-Graz Institute of Pharmaceutical Sciences Pharmaceutical Chemistry Universitätsplatz 1/I A-8010 Graz, Austria phone: +43(0)316380-5397 (1)
Center of Systems Biology, Biomedical Research Foundation, Academy of Athens, Greece (1)
Conway Institute of Biomolecular and Biomedical Research,School of Medicine, University College Dublin (1)
Centre for Proteome Research, Institute of Integrative Biology, University of Liverpool, Liverpool, L69 7ZB, UK (1)
University of Colorado Boulder BioFrontiers MCDB (1)
LPCV/Lipid (1)
Regional Centre for Biotechnology, Faridabad, India (1)
Systems Arbovirology, Leibniz Institute of Virology (LIV), Hamburg, Germany (1)
Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Adolf-Reichwein-Str. 23, 07745, Jena, Germany (1)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark (1)
Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, Ontario, Canada. (1)
School of Medicine, Conway Institute of Biomedical and Biomolecular Research, University College Dublin (1)
Department of Neuroscience University of Connecticut School of Medicine (1)
School of Medicine, Conway Insitute of Biomolecular and Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland (1)
Max-Planck-Institute for Biophysical Chemistry Bioanalytical Mass Spectrometry Group University Medical Center Goettingen Bioanalytics Institute for Clinical Chemistry (1)
Wallenberg Centre for Molecular Medicine (WCMM), Linköping University, SE-581 85, Linköping, Sweden Department of Clinical and Experimental Medicine (IKE), Faculty of Health Sciences, Linköping University, SE-581 85, Linköping, Sweden (1)
Professor, Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology (NTNU), PO Box 8905, N-7491, Trondheim, Norway Phone: +47 72573075, Fax: +47 72576400 (1)
John van Geest Cancer Research Centre, Nottingham Trent University, UK (1)
Professor Of Immunobiology, University College Dublin, School of Medicine, Conway Institute Belfield Dublin 4. SFI Stokes Professor, Professor of Immunobiology, School of Medicine, Conway Institute, UCD, Ireland. Adjunct Professor, Dept of Immunology & Microbial Science, Scripps Research, La Jolla,CA, USA (1)
Max Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany (1)

IsPrivate

False (5)

Classification

bacteria (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (889)
RNA-seq of coding RNA (149)
Unknown experiment type (60)
ChIP-seq (47)
RNA-seq of non coding RNA (27)
Other (24)
Comparative genomic hybridization by array (17)
ChIP-chip by array (16)
Methylation profiling by array (16)
ChIP-chip by tiling array (12)
Transcription profiling by SAGE (10)
Methylation profiling by high throughput sequencing (8)
Proteomic profiling by array (7)
Animal - High-throughput sequencing (4)
Transcription profiling by tiling array (4)
Transcription profiling by RT-PCR (3)
MicroRNA profiling by high throughput sequencing (3)
DNA-seq (3)
RNA-seq of coding RNA from single cells (3)
MNase-seq (2)
Translation profiling (2)
RNAi profiling by array (2)
Bisulfite-seq (2)
ATAC-seq (2)
Single nucleus RNA sequencing (2)
RIP-chip by array (1)
Animal - Single-cell sequencing (1)
Proteomic profiling by mass spectrometer (1)
Genotyping by array (1)
Antigen profiling (1)

Release Date

2022 (350)
2021 (296)
2015 (289)
2013 (255)
2025 (251)
2010 (249)
2014 (248)
2020 (242)
2012 (233)
2023 (222)
2024 (216)
2011 (212)
2019 (196)
2018 (180)
2016 (179)
2017 (169)
2008 (107)
2009 (105)
2007 (102)
2006 (63)
2005 (62)
2026 (44)
2004 (28)
2002 (10)
2003 (8)
2000 (7)
2001 (6)
1997 (5)
1999 (2)
1998 (1)

Previous page
1 / 452
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 452
Next page

Sort by:

Relevance

Page size

The U-box family genes in Medicago truncatula: key elements in response to salt, cold, and drought stresses

PRJNA563553 | ENA

The U-box family genes in Medicago truncatula: key elements in response to salt, cold, and drought stresses

The ubiquitination pathway regulates growth, development, and stress responses in plants, and the U-box protein family of ubiquitin ligases has important roles in this pathway. Here, 64 putative U-box proteins were identified in the Medicago truncatula genome. In addition to the conserved U-box moti...

ORGANISM(S): Medicago truncatula

2019-09-04 | GSE136739 | GEO

Plant U-Box 4 regulates chloroplast stress signaling and programmed cell death via Salicylic acid modulation

PRJNA1115895 | ENA

Ancient origin of animal U-box ubiquitin ligases.

Not available

S-EPMC3087547 | biostudies-literature

Structural and functional characterization of the monomeric U-box domain from E4B.

Not available

S-EPMC2806929 | biostudies-literature

Genome-wide analysis of the U-box E3 ubiquitin ligase enzyme gene family in tomato.

Not available

S-EPMC7293263 | biostudies-literature

Genome Wide Analysis of U-Box E3 Ubiquitin Ligases in Wheat (Triticum aestivum L.).

Not available

S-EPMC7962133 | biostudies-literature

HDX-MS of CHIP wt and K30A mutant

HDX-MS was used to establish that conformational-inhibition-signals extended from the TPR-domain to the U-box of CHIP. This underscores inter-domain allosteric regulation of CHIP by the core molecular chaperones. Defining the chaperone-associated TPR-domain of CHIP as a manager of inter-domain commu...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2015-07-30 | MSV000079205 | MassIVE

Classification of barley U-box E3 ligases and their expression patterns in response to drought and pathogen stresses.

Not available

S-EPMC6489225 | biostudies-literature

Structure of an E3:E2~Ub complex reveals an allosteric mechanism shared among RING/U-box ligases.

Not available

S-EPMC3462262 | biostudies-literature

Previous page
1 / 452
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 452
Next page

Sort by:

Relevance

Page size

4516 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

CHEBI ID

Metabolite Name

First Public Date

Modelling Approach

Lab affiliation

Tags

IsPrivate

Classification

Modification

Study type

Release Date

OmicsDI is part of the ELIXIR infrastructure

Tweets