Ubiquitin-like fold

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Unknown (254)
Transcriptomics (212)
Proteomics (39)
Genomics (20)
Metabolomics (5)
Other (1)

Organisms

Homo sapiens (74)
Mus musculus (59)
Rattus norvegicus (9)
Danio rerio (7)
Entamoeba histolytica (5)
Saccharomyces cerevisiae (5)
Arabidopsis thaliana (5)
Oncorhynchus mykiss (4)
Zea mays (4)
Escherichia coli (4)
Micropterus salmoides (4)
Bos taurus (3)
Cucumis sativus (2)
Macaca mulatta (2)
Streptococcus pyogenes (2)
Macaca fascicularis (2)
Solanum lycopersicum (2)
Caenorhabditis elegans (2)
Canis lupus familiaris (2)
Candida albicans (2)
Thalassiosira pseudonana CCMP1335 (2)
Morone saxatilis (1)
Yersinia pseudotuberculosis YPIII (1)
Geobacter metallireducens (1)
Burkholderia thailandensis (1)
Rhipicephalus microplus (1)
Chlamydia trachomatis (1)
Staphylococcus aureus subsp. aureus MSSA476 (1)
Papio anubis (1)
Daphnia magna (1)

Organisms

Mus musculus (3)
Micropterus salmoides (2)
Thalassiosira pseudonana CCMP1335 (1)
Corynebacterium glutamicum ATCC 13032 (1)
Schizosaccharomyces pombe (1)
Zea mays (1)
Arabidopsis thaliana (1)
Saccharomyces cerevisiae (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (210)
pride (33)
ENA (12)
geo (11)
MetaboLights (5)
MassIVE (2)
PAXDB (2)
EGA (1)
GPMDB (1)
PanoramaPublic (1)

Tissue

Cell culture (7)
Plant cell (2)
Cerebrospinal fluid (1)
Epithelial cell (1)
Fibroblast (1)
JURKAT cell (1)
Leaf (1)
Liver (1)
Lymph node (1)
Macrophage (1)
Permanent cell line cell (1)
Shoot (1)
T cell (1)

Disease

ARR1-SRDX (1)
Non-infected (1)
Temporal lobe epilepsy (1)
Not Available (1)
Amyotrophic lateral sclerosis type 1 (1)
Cervix carcinoma (1)
Disease free (1)
Huntington Disease (1)
Obesity (1)
Parkinson's disease (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (33)
Shotgun proteomics (15)
Affinity purification coupled with mass spectrometry proteomics (7)
Bottom-up proteomics (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Data-dependent acquisition (4)
NMR spectroscopy assay (2)
Mass spectrometry (2)
Data-independent acquisition (2)
Gel-based experiment (2)
HDMSE (2)
SWATH MS (2)
Mass spectrometry assay (1)
MSE (1)

Instrument Platform

Illumina NovaSeq 6000 (6)
Illumina HiSeq 2000 (2)
Nuclear Magnetic Resonance (NMR) - (2)
Illumina NovaSeq 6000 sequencing platform (Illumina) (1)
See manuscript (1)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel). (1)
FastPrep‑24 homogenizer (MP Biomedicals), operated at 5 m/s for 10 seconds. (1)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (1)
G2565AA DNA microarray scanner [Agilent] (1)
BAS-5000 [FUJIFILM] (1)
ScanArray Express HT [PerkinElmer] (1)
NextSeq 2000 (1)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
Instrument (1)
LTQ Orbitrap Elite (1)
TimsTOF Pro (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2010 (38)
2013 (35)
2011 (27)
2012 (25)
2015 (19)
2014 (16)
2008 (16)
2016 (15)
2026 (11)
2023 (9)
2021 (8)
2007 (8)
2025 (7)
2009 (6)
2019 (5)
2005 (4)
2022 (4)
2020 (3)
2024 (3)
2017 (2)
2006 (1)
2018 (1)

UNIPROT ID/AC

5691.AAQ15626 (2)
5691.AAQ15709 (2)
5691.AAQ16021 (2)
5691.AAZ10366 (2)
5691.AAZ10412 (2)
5691.AAZ10463 (2)
5691.AAZ10464 (2)
5691.AAZ10465 (2)
5691.AAZ10466 (2)
5691.AAZ10510 (2)
5691.AAZ10511 (2)
5691.AAZ10512 (2)
5691.AAZ10771 (2)
5691.AAZ10942 (2)
5691.AAZ10991 (2)
5691.AAZ11075 (2)
5691.AAZ11276 (2)
5691.AAZ11337 (2)
5691.AAZ11338 (2)
5691.AAZ11340 (2)
5691.AAZ11529 (2)
5691.AAZ11530 (2)
5691.AAZ11531 (2)
5691.AAZ11532 (2)
5691.AAZ11533 (2)
5691.AAZ11534 (2)
5691.AAZ11535 (2)
5691.AAZ11536 (2)
5691.AAZ11537 (2)
5691.AAZ11660 (2)

CHEBI ID

CHEBI:16870 (3)
CHEBI:15891 (3)
CHEBI:16919 (3)
CHEBI:15603 (3)
CHEBI:17295 (3)
CHEBI:37054 (2)
CHEBI:64552 (2)
CHEBI:37714 (2)
CHEBI:13705 (2)
CHEBI:28847 (2)
CHEBI:15361 (2)
CHEBI:24996 (2)
CHEBI:31011 (2)
CHEBI:4153 (2)
CHEBI:40410 (2)
CHEBI:60645 (2)
CHEBI:16530 (2)
CHEBI:16283 (2)
CHEBI:15729 (2)
CHEBI:16977 (2)
CHEBI:4139 (2)
CHEBI:4208 (2)
CHEBI:15428 (2)
CHEBI:17754 (2)
CHEBI:18147 (2)
CHEBI:4167 (2)
CHEBI:17268 (2)
CHEBI:17196 (2)
CHEBI:17115 (2)
CHEBI:17750 (2)

Metabolite Name

L-Alanine (3)
L-Asparagine (3)
Taurine (3)
Pyruvate (3)
Glycerophosphocholine (3)
L-Valine (3)
L-Leucine (3)
L-GlutamicAcid (2)
2-Hydroxyisovalerate (2)
3-Hydroxybutyrate (2)
2-Hydroxybutyrate (2)
2-Oxoisovalerate (2)
L-Glycine (2)
TMAO (2)
Valerate (2)
D-Fucose (2)
L-Aspartate (2)
Myo-Inositol (2)
D-Galactose (2)
D-Fructose (2)
L-Cystine (2)
D-Glucose (2)
2-Oxoglutarate (2)
Glycerol (2)
Acetoacetate (2)
Pyroglutamate (2)
Betaine (2)
D-Maltose (2)
L-Proline (2)
N-Acetylglycine (2)

First Public Date

2014 (4)
2019 (2)
2013 (2)
2024 (1)
2021 (1)
2020 (1)
2017 (1)

Classification

bacteria (1)

Study type

Transcription profiling by array (152)
RNA-seq of coding RNA (25)
ChIP-seq (6)
Unknown experiment type (5)
Transcription profiling by RT-PCR (5)
Other (5)
Transcription profiling by SAGE (2)
ChIP-chip by tiling array (1)
ChIP-chip by array (1)
Genotyping by array (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2010 (49)
2011 (46)
2013 (41)
2014 (35)
2012 (33)
2016 (32)
2015 (31)
2008 (22)
2019 (19)
2017 (18)
2009 (16)
2022 (16)
2018 (16)
2007 (15)
2021 (13)
2023 (12)
2024 (10)
2025 (9)
2005 (8)
2020 (8)
2026 (5)
2006 (5)
2004 (1)
2003 (1)
2002 (1)
2001 (1)
2000 (1)

Lab affiliation

Dept. of Biochemistry & Molecular Biology, Complex Carbohydrate Research Center, Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA 30602, Dept. of Biochemistry & Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73104 USA (2)
Bioanalytical Mass Spectromerty Group Max Planck Institute for Biophysical Chemnistry Goettingen, Germany (1)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Multidisciplinary Sciences, Am Fassberg 11, 37077 Göttingen, Germany Bioanalytics Group, Institute of Clinical Chemistry, University Medical Center Göttingen, Robert-Koch-Straße 40, 37075 Göttingen, Germany (1)
CECAD Research Center, Joseph-Stelzmann Str. 26, 50931, Cologne, Germany (1)
COI-NDM (University of Oxford) (1)
Center for Synthetic Microbiology & Department of Chemistry, Marburg University,Hans-Meerwein-Straße 4, 35043 Marburg, Germany (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Biology, University of Konstanz, 78457 Konstanz, Germany (1)
Department of Cell & Chemical Biology, Leiden University Medical Center, Leiden, The Netherlands (1)
Department of Medical Genetics, Cambridge Institute for Medical Research, The Keith Peters Building, Cambridge Biomedical Campus, Hills Road, Cambridge CB2 0XY, United Kingdom (1)
Department of Neurology, University of Michigan Medical School, Ann Arbor, MI 48109, United States (1)
Department of Tumor Biology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (1)
Division of Gastroenterology, Boston Children's Hospital and Harvard Medical School, 300 Longwood Ave., Boston, MA 02115, USA (1)
González-Prieto laboratory, Department of Cell and Chemical Biology, Leiden University Medical Center (LUMC), Leiden, The Netherlands. (1)
Helmholtz Zentrum München Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH) Ingolstädter Landstr. 1 D-85764 Neuherberg Germany (1)
IMP-Research Institute of Molecular Pathology Campus-Vienna-Biocenter 1 1030 Vienna (1)
Institute for Research in Immunology and Cancer, Québec, Canada (1)
Institute of Biochemistry II, Faculty of Medicine, Goethe University Frankfurt, Theodor-Stern-Kai 7, 60590 Frankfurt am Main, Germany. Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Max-von-Laue Straße 15, 60438 Frankfurt am Main, Germany. Fraunhofer Institute of Translational Medicine and Pharmacology, Carl-von-Noorden-Platz 9, 60596 Frankfurt am Main, Germany (1)
Institute of Cancer Research, London & Wellcome Trust Sanger Institute (1)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (1)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (1)
Manchester Cancer Research Centre, Division of Cancer Sciences, School of Medical Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK (1)
Microbiology and Cell Science at University of Florida (1)
Monte Rosa Therapeutics (1)
Proteomics Service CIC bioGUNE Bizkaia Tech. Park Build. 800 48160 Derio Spain (1)
State Key Laboratory of Veterinary Etiological Biology, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu, PR China (1)
Target Discovery Institute (1)
The Institute of Cancer Research (1)
Universidade Estadual do Norte Fluminense Darcy Ribeiro Laboratório de Biologia Celular ou Tecidual Av. Alberto Lamego 2000 - Campos dos Goytacazes-RJ 28013-602 - Brazil (lab head) (1)
University of Copenhagen (1)

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E2~dID: A versatile approach to identify substrates modified with ubiquitin and ubiquitin-like molecules by specific E3 enzymes

Covalent modifications of proteins with ubiquitin and ubiquitin-like molecules are instrumental to most, if not all biological processes. However, identifying the E3 ligase responsible for these modifications remains a major bottleneck in ubiquitin research. Here, we have developed an E2-thioester-d...

ORGANISM(S): Homo sapiens (Human) Saccharomyces cerevisiae (Baker's yeast)

2019-04-03 | PXD008624 | Pride

Anatomy of the E2 ligase fold: implications for enzymology and evolution of ubiquitin/Ub-like protein conjugation.

Not available

S-EPMC2701696 | biostudies-literature

Rnf41 is associated with anxiety like behavior, major depression and beta carboline induced seizure

The molecular etiology of invididual differences in complex behavior traits and susceptibility to psychiatric illness remains incomplete. Using an unbiased genetic approach in a mouse model, Quantitative Trait Loci (QTL) influencing anxiety-like behaviors and beta-carboline-induced seizure vulnerabi...

ORGANISM(S): Mus musculus

2010-05-25 | E-GEOD-8641 | biostudies-arrayexpress

TDP-43 N terminus encodes a novel ubiquitin-like fold and its unfolded form in equilibrium that can be shifted by binding to ssDNA.

Not available

S-EPMC4284588 | biostudies-literature

Ubiquitin-specific protease 4 is inhibited by its ubiquitin-like domain.

Not available

S-EPMC3077250 | biostudies-literature

The Fanconi Anemia DNA Repair Pathway Is Regulated by an Interaction between Ubiquitin and the E2-like Fold Domain of FANCL.

Not available

S-EPMC4543658 | biostudies-literature

iUUCD 2.0: an update with rich annotations for ubiquitin and ubiquitin-like conjugations.