Sort   by:  
 Page size 
ProteomicsWhole-cell proteome analyses of prototrophic Schizosaccharomyces pombe wild-type and mug174Δ strains during vegetative growth and in G0/cellular quiescence (1 day, 7 days, or 14 days following nitrogen depletion) using liquid chromatography followed by tandem mass spectrometry (LC-MS/MS) and the label-free quantitative proteomics method.
Using a whole-cell proteome approach, we investigated the effect of the mug174+ gene deletion on the proteome during vegetative growth and G0/cellular quiescence in the fission yeast Schizosaccahromyces pombe. We revealed that (1) Mug174 ensured the protein expression from intron-containing genes du...
ORGANISM(S): Schizosaccharomyces pombe Schizosaccharomyces pombe 972h- 
2024-10-17 | PXD052066 | Pride
Cellular quiescence Schizosaccharomyces pombe G0 Vegetative growth Lc-ms/ms 
MetabolomicsTime-resolved decoding of metabolic signatures of in vitro growth of the hemibiotrophic pathogen Colletotrichum sublineolum
Metabolomics has emerged as a powerful approach to comprehensively interrogate cellular biochemistry. As such, we applied an untargeted liquid chromatography-mass spectrometry metabolomic strategy to elucidate metabolome changes in the anthracnose-causing hemibiotrophic sorghum pathogen, Colletotric...
2022-05-30 | MTBLS735 | MetaboLights
TranscriptomicsGene expression in Aspergillus nidulans at different developmental stages
Microarray analysis was used to compare different developmental stages of the filamentous fungus Aspergillus nidulans. Cells were grown for various times and comparisons made between: 1. Isolated conidia (0 hours) and isotropically expanding cells (3 hours). 2. Isotropically expanding cells (3 hour...
ORGANISM(S): Emericella nidulans 
2008-05-01 | E-GEOD-7698 | biostudies-arrayexpress
TranscriptomicsDivergent Patterns of Endogenous Small RNA Populations From Seed and Vegetative Tissues of Glycine max
An overview of small RNAs sequences existing in seed development and contrasted with vegetative tissues of the soybean Four small RNA sequence populations from high throughput deep sequencing-by-synthesis and representing different tissues/organs of the soybean were characterized into small RNA cla...
ORGANISM(S): Glycine max 
2012-10-09 | E-GEOD-36728 | biostudies-arrayexpress
MetabolomicsAnalysis of Growth Phases of Enterotoxigenic Escherichia coli Reveals a Distinct Transition Phase before Entry into Early Stationary Phase with Shifts in Tryptophan, Fucose, and Putrescine Metabolism and Degradation of Neurotransmitter Precursors

Enterotoxigenic Escherichia coli (ETEC) is a major cause of diarrhea in children and adults in endemic areas. Gene regulation of ETEC during growth in vitro and in vivo needs to be further evaluated, and here we describe the full transcriptome and metabolome of ETEC dur...

2022-07-15 | MTBLS3540 | MetaboLights
TranscriptomicsThe effect of mvp2 mutation on the vegetative/generative transition in Triticum monococcum
Examination of gene expression pattern in Triticum monococcum line KU-104-1 and its mvp2 mutant during the vegetative/generative transition at cold temperature conditions.
ORGANISM(S): Triticum monococcum 
2016-07-20 | E-MTAB-3968 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of traps and vegetative hyphae of the nematophagous fungus Monacrosporium haptotylum
A microarray analysis was conducted to investigate transcriptional differences between traps and vegetative hyphae of the nematophagous fungus Monacrosporium haptotylum. Our goal was to identify genes that show differential regulation in the two different cell types; 1) traps (knobs) and 2) vegetati...
ORGANISM(S): Monacrosporium haptotylum 
2005-01-23 | E-MEXP-250 | biostudies-arrayexpress
TranscriptomicsMicroarray analysis of vegetative phase change in maize
Vegetative phase change is the developmental transition from the juvenile phase to the adult phase during which a plant becomes competent for sexual reproduction. Gain of ability to flower is often accompanied by changes in patterns of differentiation in newly forming vegetative organs. In maize, ...
ORGANISM(S): Zea mays 
2010-06-20 | E-GEOD-9430 | biostudies-arrayexpress
GenomicsCytosine methylation and hydroxymethylation mark DNA for elimination in Oxytricha trifallax.
We report the existence of both methylcytosine and hydroxymethylcytosine in the genomic DNA of the ciliate Oxytricha trifallax during its genome rearrangement process. These modifications are dynamically added, de novo, to sequences targeted for elimination and are not present after the rearrangemen...
ORGANISM(S): Oxytricha trifallax 
2012-09-26 | E-GEOD-41060 | biostudies-arrayexpress
TranscriptomicsExpression data from Aspergillus niger comparing aerial structures with vegetative mycelium
A. niger undergoes dramatic changes during asexual development. We tried to identify the differences in RNA expression levels that are important for this development. We used micro-arrays to determine which genes were up- or down-regulated in the aerial structures, the part of the colony that is for...
ORGANISM(S): Aspergillus niger 
2012-02-24 | E-GEOD-32123 | biostudies-arrayexpress
Sort   by:  
 Page size