Velasco P P - OmicsDI

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Unknown (1131)
Genomics (76)
Proteomics (33)
Transcriptomics (23)
Metabolomics (5)

Organisms

Homo sapiens (92)
Mus musculus (14)
Vitis vinifera (4)
Malus domestica (3)
Rattus norvegicus (2)
Bacteria (2)
Bos taurus (2)
Brassica oleracea var. botrytis (2)
Vitis riparia x Vitis berlandieri (1)
Mycobacterium tuberculosis CDC1551 (1)
Zea mays (1)
Campylobacter jejuni (1)
mixed sample (1)
Salmo salar (1)
Bison (1)
Chlamydia trachomatis L2/434/Bu (1)
Enterococcus faecium (1)
Equus sp. (1)
Escherichia coli (1)
Formica sp. BOLD:AAA1469 (1)
Fructilactobacillus sanfranciscensis DSM 20451 (1)
Klebsiella pneumoniae (1)
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632 (1)
Oecophyllibacter saccharovorans (1)
Oreochromis niloticus (1)
Oryctolagus cuniculus (1)
Pseudomonas aeruginosa PAO1H2O (1)
Staphylococcus aureus (1)
Stephanorhinus (1)
Streptococcus thermophilus MTCC 5460 (1)

Organisms

Potentilla micrantha (1)

Repository

EGA (72)
pride (32)
biostudies-arrayexpress (24)
MetaboLights (4)
ENA (3)
GNPS (1)
MassIVE (1)

Tissue

Cell culture (5)
B cell (4)
Blood (3)
Blood plasma (3)
Epithelial cell (2)
Leaf (2)
Blood cell (1)
Bone (1)
Bone marrow-derived macrophage (1)
CACO-2 cell (1)
Cell suspension culture (1)
Cerebrospinal fluid (1)
Colon (1)
Dentin (1)
Embryo (1)
Embryonic stem cell (1)
Heart (1)
Hematopoietic tissue (1)
JURKAT cell (1)
Kidney (1)
Schwann cell (1)
Stem cell (1)
T-lymphoblastic leukemia cell line (1)
Tooth enamel (1)
Urine (1)

Disease

Acute leukemia (2)
Lymphoma (2)
Normal (1)
Brain cancer (1)
Breast cancer (1)
Cervix carcinoma (1)
Chronic lymphocytic leukemia (1)
Colon cancer (1)
Melanoma (1)
Renal clear cell carcinoma (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (32)
Shotgun proteomics (19)
Bottom-up proteomics (6)
Mass spectrometry (3)
Affinity purification coupled with mass spectrometry proteomics (3)
Gel-based experiment (2)
Top-down proteomics (2)
ABI_SOLID, Illumina HiSeq 2000, Illumina 450K, AB 5500xl Genetic Analyzer, AB 5500 Genetic Analyzer, ILLUMINA (1)
Illumina Genome Analyzer II, Affymetrix snp 6.0, Illumina Genome Analyzer IIx, GPL570, Affymetrix GeneChip Human Genome U133 plus 2.0 (1)
Mass spectrometry assay (1)
All-ion fragmentation (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)

Instrument Platform

Complete Genomics (1)
Axon 4000B scanner (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
MicrOTOF-Q II (1)
Orbitrap Fusion (1)
Compact™ QTOF-MS (Bruker) (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
MS Imaging - (1)

Publication Date

2022 (9)
2025 (8)
2024 (6)
2016 (5)
2012 (5)
2026 (5)
2019 (3)
2023 (3)
2015 (2)
2011 (2)
2009 (2)
2021 (2)
2018 (2)
2020 (1)
2014 (1)
2013 (1)
2010 (1)
2008 (1)
2006 (1)
2017 (1)

CHEBI ID

CHEBI:137096 (3)
CHEBI:137098 (3)
CHEBI:116314 (2)
CHEBI:137124 (2)
CHEBI:137125 (2)
CHEBI:28794 (2)
CHEBI:30769 (2)
CHEBI: 132244 (1)
CHEBI: 136531 (1)
CHEBI: 15354 (1)
CHEBI: 15603 (1)
CHEBI: 15903 (1)
CHEBI: 15937 (1)
CHEBI: 16015 (1)
CHEBI: 16708 (1)
CHEBI: 16821 (1)
CHEBI: 16857 (1)
CHEBI: 173454 (1)
CHEBI: 174796 (1)
CHEBI: 17895 (1)
CHEBI: 20912 (1)
CHEBI: 27506 (1)
CHEBI: 28794 (1)
CHEBI: 28873 (1)
CHEBI: 32525 (1)
CHEBI: 33076 (1)
CHEBI: 38257 (1)
CHEBI: 58670 (1)
CHEBI: 6031 (1)
CHEBI: 74475 (1)

Metabolite Name

3-Benzyl-2-methyl-2-tridecanamine (3)
Coumarin (3)
3-Benzyl-2-methyl-2-pentadecanamine (2)
3-Hexenyl salicylic acid (2)
Heptadecasphinganine (2)
Hexadecylamine (2)
Lysophosphatidilcholine (2)
Myristamide (2)
(E)-N-(2-(((3-(4-Chlorophenyl)allyl)(methyl)amino)methyl)phenyl)-N-(2-hydroxyethyl)-4-methoxybenzenesulfonamide (1)
(Z)-1,3-Octadiene (1)
1,2-Benzenedithiol (1)
1,7-Octadiene (1)
1-Acetoxy-2-hydroxy-16-heptadecyn-4-one (1)
1-Dodecanoyl-2-(5Z,8Z,11Z,14Z,17Z-eicosapentaenoyl)-glycero-3-phosphate (1)
1-Palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (1)
2,3-Dihidro-1H-indol (1)
2,3-Dihydro-1H-pyrrolizine-5-carboxaldehyde (1)
2-(3-Phenylpropyl)tetrahydrofuran (1)
2-Acetyl-6-methylpyridine (1)
2-Hexadecenamide (1)
2-Nonenal, 4-oxo- (1)
2-Phenylpropionaldehyde dimethyl acetal (1)
3,3'-Iminodipropionitrile (1)
3,4-dimethylaniline (1)
3,5,7-Octatriyn-1-ol (1)
3-Hexylpyridine (1)
3-Phenylpropyl glucosinolate (1)
3-[(1E)-1-Buten-3-yn-1-yl] pyridine (1)
3-benzyl-2-methyl-2-pentadecanamine (1)
3-pentylpyridine (1)

First Public Date

2026 (1)
2020 (1)
2016 (1)

Modification

15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (18)
Comparative genomic hybridization by array (2)
Animal - High-throughput sequencing (1)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of coding RNA (1)

Release Date

2022 (174)
2021 (170)
2025 (141)
2023 (130)
2024 (119)
2020 (91)
2016 (45)
2019 (44)
2018 (43)
2015 (37)
2017 (33)
2026 (22)
2013 (21)
2012 (21)
2011 (15)
2010 (15)
2014 (13)
2009 (11)
2008 (3)
2007 (2)
2000 (2)
2006 (1)
2002 (1)
1999 (1)

Lab affiliation

Department of Medicine and General Service of Cytometry, Cancer Research Centre-IBMCC, IBSAL. University of Salamanca-CSIC, Campus Miguel de Unamuno s/n, 37007 Salamanca, Spain (2)
Aalborg university (1)
Biology department, Maynooth University, Republic of Ireland (1)
Center for Molecular Medicine, University Medical Center Utrecht, Utrecht University, 3584 CG Utrecht, The Netherlands. (1)
Centro Nacional de Investigaciones Cardiovasculares (CNIC) and CIBER de Enfermedades Cardiovasculares (CIBERCV), Madrid, Spain (1)
Departamento de Ingeniería Química y Ambiental, Universidad Nacional de Colombia, AK 30 45-03, Bogotá, Colombia (1)
Departamento de Microbiología y Parasitología, Facultad de Medicina, Universidad Nacional Autónoma de México, Ciudad Universitaria, Ciudad de México 04510, Mexico; rgarc@bq.unam.mx (1)
Department of Medicine and General Cytometry Service-Nucleus, Cancer Research Centre (CSIC/USAL/IBSAL). Avda. Universidad de Coimbra, S/N, 37007 Salamanca, Spain. Phone: +34 923294811 Fax: +34 923294743 (1)
Department of Medicine and General Service of Cytometry, Cancer Research Centre-IBMCC, IBSAL. University of Salamanca-CSIC (1)
Fernando Garcia Martinez Ph.D. Proteomics & MS Specialist Proteomics Unit, Spanish National Cancer Research Centre (CNIO) Melchor Fernández Almagro 3. E28029 MADRID, SPAIN. Phone +34 912246900 ext 3112 (1)
Immunology Section, Department of Experimental Medical Science, Biomedical Center D14, Lund University, Klinikgatan 32, 221 84 Lund, Sweden (1)
Institut Pasteur, Université de Paris, UMR3691 CNRS, Unité de Biologie cellulaire de l'infection microbienne, F-75015, Paris, France. (1)
Institute of Horticulture, Lithuanian Research Centre for Agriculture and Forestry (1)
L11. Department of Medicine. Cancer Research Center - USAL. 37007 Salamanca, Spain. (1)
Laboratori Institut Josep Carreras (IJC) Ala Sud, Sector 2, Planta 4 Facultat de Medicina Universitat de Barcelona C. Casanova 143 08036 Barcelona (1)
Laboratory 11 and Proteomics Unit. Cancer Research Center. Salamanca. Spain (1)
Lundbeck Foundation GeoGenetics Centre, Natural History Museum of Denmark, University of Copenhagen, Denmark (1)
Molecular Oncology Lab, Hospital Universitario La Paz-IdiPAZ, Madrid, Spain (1)
Novo Nordisk Foundation Center for Biosustainability, DTU Biosustain, Kgs. Lyngby, Denmark (1)
Programa de Genómica Funcional de Procariontes, Centro de Ciencias Genómicas-UNAM. Av. Universidad s/n, Col. Chamilpa, Cuernavaca, Morelos. CP 62210. México. (1)
Proteomic Hematology, Division of Molecular Hematology, Lund Stem Cell Center, Lund University (1)
Proteomics Group-ProteoRed PRB2/ISCIII Instituto de Investigación Biomédica de A Coruña (Spain) (1)
Proteomics Group-ProteoRed PRB3/ISCIII Instituto de Investigación Biomédica de A Coruña (INIBIC), Spain (1)
Proteomics Laboratory CSIC/UAB, Institut d’Investigacions Biomèdiques de Barcelona (IIBB-CSIC-IDIBAPS), Barcelona, Spain. (1)
Proteomics Pltaform CIC bioGUNE Bizkaia Tech. Park Build. 800 48160 Derio Spain (1)
Proteomics Service CIC bioGUNE Bizkaia Tech. Park Build. 800 48160 Derio Spain (1)
Proteomics Service CIC bioGUNE Bizkaia Tech. Park Build. 800 Derio 48160 Spain (1)
Proteomics Service CIC bioGUNE Bizkaia Tech. Park. Build. 800 Derio 48160 Spain (1)
Proteomics Unit Spanish National Cancer Research Centre (CNIO) ProteoRed-ISCIII Melchor Férnandez Almagro, 3 28029 Madrid. SPAIN (1)
The Insitute of Cancer Research (1)

Tags

xref:PubMed:31839456 (1)

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RNA sequestration in P-bodies sustains myeloid leukaemia.

Not available

S-EPMC12042958 | biostudies-literature

Survival Analyses of Patients With Metastatic Renal Cancer Treated With Targeted Therapy With or Without Cytoreductive Nephrectomy: A National Cancer Data Base Study.

Not available

S-EPMC5024547 | biostudies-literature

Mitochondrial DNA from the eradicated European Plasmodium vivax and P. falciparum from 70-year-old slides from the Ebro Delta in Spain.

Not available

S-EPMC5068322 | biostudies-literature

Resistance to Plasmopara viticola in a grapevine segregating population is associated with stilbenoid accumulation and with specific host transcriptional responses

Downy mildew, caused by the oomycete Plasmopara viticola, is a serious disease in Vitis vinifera, the most commonly cultivated grapevine species. Several wild Vitis species have instead shown resistance to this pathogen and they have been used as a source to introgress resistance into a V. vinifera ...

ORGANISM(S): Vitis vinifera

2011-04-28 | E-GEOD-28851 | biostudies-arrayexpress

Co-located quantitative trait loci mediate resistance to Agrobacterium tumefaciens, Phytophthora cinnamomi, and P. pini in Juglans microcarpa × J. regia hybrids.

Not available

S-EPMC8087670 | biostudies-literature

Characterization of transcriptional reprogramming of Vitis vinifera during Trichoderma-induced resistance and in response to Plasmopara viticola using RNA-Seq

We have carried out a global transcriptional analysis of grapevine resistance induced by Trichoderma harzianum T39 against Plasmopara viticola using high-throughput Illumina sequencing technology. Four samples were analyzed: control (C), T39-treated (T39), P. viticola-inoculated control (C+P.v.) and...

ORGANISM(S): Vitis vinifera

2012-06-27 | E-MTAB-4324 | biostudies-arrayexpress

Welander distal myopathy-associated TIA1 mutation exacerbates P-body and stress granule dynamics concomitant with nucleolar stress under oxidative stress.

Not available

S-EPMC12305575 | biostudies-literature

Piperidine and valproic acid hybrid compound (F2S4-<i>p</i>-VPA) outperforms methotrexate as anti-proliferative and cells migration inhibition.

Not available

S-EPMC12266131 | biostudies-literature

In vitro activity of glucosinolates and their degradation products against brassica-pathogenic bacteria and fungi.

Not available

S-EPMC4272705 | biostudies-literature

Pinot Noir berry transcriptome during ripening.

Global gene expression analysis of grapevine cv. Pinot Noir berries during development and ripening. Time-course comparison of samples collected at three developmental stages (stages 33, 34 and 36 according to the modified E-L system, ref: Coombe BG, Aust J Grape Wine Res 1995, 1: 104-110) during th...

ORGANISM(S): Vitis vinifera

2011-08-26 | E-GEOD-31674 | biostudies-arrayexpress

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1268 Results

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