Vervoort M M - OmicsDI

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Unknown (179)
Proteomics (21)
Genomics (13)
Transcriptomics (8)
Metabolomics (6)

Organisms

Homo sapiens (25)
Mus musculus (11)
Lactococcus cremoris subsp. cremoris MG1363 (4)
Sus scrofa (1)
Arabidopsis thaliana (1)
Danio rerio (1)
Drosophila melanogaster (1)
Lactiplantibacillus plantarum WCFS1 (1)

Repository

pride (21)
EGA (12)
biostudies-arrayexpress (9)
GNPS (3)
MetaboLights (3)

Tissue

Blood cell (2)
Milk (2)
Cell culture (1)
HEK-293T cell (1)
HeLa cell (1)
Monocyte (1)
Osteoblast (1)
Tail (1)
Tibia (1)

Disease

Acute leukemia (2)
Breast cancer (1)
Charcot-Marie-Tooth disease (1)
Spinal muscular atrophy (1)

Technology Type

Mass Spectrometry (21)
Shotgun proteomics (11)
Bottom-up proteomics (8)
Mass spectrometry (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Gel-based experiment (2)
Illumina ChIP-Sequencing, Illumina MBD-Sequencing, Illumina beadarray, Illumina HiSeq 2500, Illumina MiSeq, Illumina Bisulfite-Sequencing (1)
NMR spectroscopy (1)
Data-independent acquisition (1)
HDMSE (1)

Instrument Platform

LTQ Orbitrap (3)
6550 Q-TOF LC-MS Agilent (1)
Bruker (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2025 (11)
2022 (4)
2015 (3)
2018 (3)
2013 (2)
2012 (2)
2019 (2)
2021 (2)
2020 (2)
2014 (1)
2008 (1)
2023 (1)
2024 (1)
2016 (1)

CHEBI ID

CHEBI:142276 (1)
CHEBI:143032 (1)
CHEBI:143033 (1)
CHEBI:143034 (1)
CHEBI:143035 (1)
CHEBI:143036 (1)
CHEBI:143037 (1)
CHEBI:143038 (1)
CHEBI:143039 (1)
CHEBI:143040 (1)
CHEBI:143041 (1)
CHEBI:143042 (1)
CHEBI:143043 (1)
CHEBI:143044 (1)
CHEBI:143045 (1)
CHEBI:143046 (1)
CHEBI:143047 (1)
CHEBI:143048 (1)
CHEBI:143049 (1)
CHEBI:143050 (1)
CHEBI:143051 (1)
CHEBI:143052 (1)
CHEBI:143053 (1)
CHEBI:143054 (1)
CHEBI:143055 (1)
CHEBI:143056 (1)
CHEBI:143057 (1)
CHEBI:143058 (1)
CHEBI:143059 (1)
CHEBI:143060 (1)

Metabolite Name

(+)-12-methyl myristic acid (1)
(2E,4E,6E,8E,10E)-11-[(4R)-4-hydroxy-2,6,6-trimethylcyclohexen-1-yl]-5,9-dimethylundeca-2,4,6,8,10-pentaenal (1)
(2S,4S)-Pinnatanine (1)
(S,E)-Lyratol propanoate (1)
1,2-Di-O-palmitoyl-3-O-(6-sulfoquinovopyranosyl)glycerol (1)
1-O-Sinapoyl-beta-D-glucose (1)
12'-Apo-b-carotene-3,12'-diol (1)
15:0 Cholesteryl ester (1)
17-(7-hydroxy-6-methylhept-5-en-2-yl)-4,4,10,13,14-pentamethyl-1,2,5,6,12,15,16,17-octahydrocyclopenta[a]phenanthren-3-one (1)
2,2,3-Trimethyltridecanoic acid (1)
2,3-dihydroxypropyl icos-11-enoate (1)
2-Oxoglutarate (1)
2-[3,7-dimethyl-9-(2,6,6-trimethylcyclohexen-1-yl)nona-2,6-dienyl]benzene-1,4-diol (1)
2-furoic acid (1)
2-palmitoleoyl-glycerol (1)
3-Hydroxy-6,8-dimethoxy-7(11)-eremophilen-12,8-olide (1)
3-Hydroxybutyrate (1)
3-Ketoapotrichothecene (1)
3-O-alpha-L-Arabinopyranosylproanthocyanidin A5' (1)
4-O-beta-D-Glucosyl-sinapate (1)
5-Hydroxyferulic acid (1)
5-O-Feruloylquinic acid (1)
6,7-Dihydro-4-(hydroxymethyl)-2-(p-hydroxyphenethyl)-7-methyl-5H-2-pyrindinium (1)
8-Acetoxy-4-acoren-3-one (1)
9-Chloro-11beta,17,21-trihydroxypregn-4-ene-3,20-dione 21-acetate (1)
Acetate (1)
Acoric acid (1)
Alanine (1)
Annuionone B (1)
Apigenin 7-[rhamnosyl-(1->2)-galacturonide] (1)

Study type

Transcription profiling by array (7)
ChIP-seq (1)
RNA-seq of coding RNA (1)

Release Date

2021 (30)
2022 (28)
2024 (21)
2023 (17)
2025 (15)
2020 (14)
2018 (10)
2015 (8)
2019 (7)
2013 (6)
2016 (6)
2014 (5)
2017 (4)
2010 (4)
2012 (3)
2008 (2)
2011 (2)
2009 (2)
2007 (1)
2006 (1)
2002 (1)
2001 (1)

Lab affiliation

Wageningen University (7)
The University of Melbourne (4)
Assistant Professor, Gene Expression & Regulation Program, Wistar Institute Cancer Center, Philadelphia PA, USA (1)
Dairy Science & Technology, Food Quality & Design group, Wageningen University & Research, Wageningen, The Netherlands (1)
Department of Chemistry and Biochemistry, The University of Texas at Dallas (1)
Executive Director Cancer Research Group Leader, Gene Regulation Lab Peter MacCallum Cancer Centre, Parkville VIC 3052, Australia (1)
Executive Director Cancer Research, Peter MacCallum Cancer Centre (1)
Executive Director Cancer Research, Peter MacCallum Cancer Centre. Head, The Sir Peter MacCallum Department of Oncology, The University of Melbourne. (1)
Lab head, WEHI, Melbourne, Australia (1)
Peter MacCallum Cancer Centre, 305 Grattan St Melbourne VIC 3000 (1)
Peter MacCallum Cancer Centre. Head, The Sir Peter MacCallum Department of Oncology, The University of Melbourne. (1)
The Univeristy of Melbourne (1)

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Phylogenetic analysis of the human basic helix-loop-helix proteins.

Not available

S-EPMC116727 | biostudies-literature

Resistant starch induces catabolic but suppresses immune and cell division pathways and changes the microbiome in proximal colon of male pigs

Consumption of resistant starch (RS) has been associated with various intestinal health benefits, but knowledge on its effects on global gene expression in the colon is limited. The main objective of the current study was to identify genes affected by RS in the proximal colon to infer which biologic...

ORGANISM(S): Sus scrofa

2013-10-18 | E-GEOD-45554 | biostudies-arrayexpress

Profiling of Sox4-dependent transcriptome in skin links tumour suppression and adult stem cell activation.

Not available

S-EPMC4664675 | biostudies-literature

Dual-Color Bioluminescent Sensor Proteins for Therapeutic Drug Monitoring of Antitumor Antibodies.

Not available

S-EPMC5843950 | biostudies-literature

RNA-sequencing of cells derived from the site of inflammation of Juvenile Idiopathic Arthritis patients

Through RNA sequencing of CD4+ Tmemory/effector cells derived from the synovium of JIA patients and healthy controls, we analyzed the JIA gene expression signature. Treatment of autoinflammatory site-derived patient T cells with the BET-inhibitor JQ1 inhibited immune-related super-enhancers and pref...

ORGANISM(S): Homo sapiens

2015-09-15 | E-GEOD-71595 | biostudies-arrayexpress

Metabolomic profile of medicinal plants with anti-RVFV activity.

Not available

S-EPMC8857432 | biostudies-literature

Evaluation of sample preparation methods for NMR-based metabolomics of cow milk

The quality of milk metabolome analyzed by nuclear magnetic resonance (NMR) is greatly influenced by the way samples are prepared. Although this analytical method is increasingly used to study milk metabolites, a thorough examination of available sample preparation protocols for milk has not been re...

2019-06-13 | MTBLS623 | MetaboLights

Activity of a Long-Acting Injectable Bedaquiline Formulation in a Paucibacillary Mouse Model of Latent Tuberculosis Infection.

Not available

S-EPMC6437534 | biostudies-literature

Effects of Maerua subcordata (Gilg) DeWolf on electrophile-responsive element (EpRE)-mediated gene expression in vitro.

Not available

S-EPMC6464171 | biostudies-literature

Evolutionary dynamics of the wnt gene family: a lophotrochozoan perspective.

Not available

S-EPMC2912473 | biostudies-literature