Vibrio vulnificus

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Unknown (519)
Genomics (266)
Transcriptomics (35)
Proteomics (5)
Other (3)
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Organisms

Vibrio vulnificus (17)
synthetic construct (7)
Vibrio vulnificus CMCP6 (7)
Homo sapiens (6)
Anguilla anguilla (3)
Vibrio vulnificus MO6-24/O (3)
Alphavirus (3)
Anemia (3)
Betaherpesvirinae (3)
Borrelia (3)
Clostridium perfringens (3)
Cowpox virus (3)
Coxsackievirus (3)
Cytomegalovirus (3)
Dengue virus (3)
EFO:0001352 (3)
Filoviridae (3)
Hepatitis B virus (3)
Human alphaherpesvirus 1 (3)
Human betaherpesvirus 5 (3)
Human immunodeficiency virus (3)
Influenza A virus (3)
Influenza C virus (3)
Japanese encephalitis virus group (3)
Listeria monocytogenes (3)
Arabidopsis thaliana (2)
Vibrio campbellii (1)
Human immunodeficiency virus 1 (1)
Escherichia coli (1)
Mus musculus (1)

Organisms

Vibrio vulnificus (134)
Vibrio vulnificus MO6-24/O (27)
Vibrio vulnificus CMCP6 (5)
Vibrio vulnificus Env1 (3)
Vibrio vulnificus NBRC 15645 = ATCC 27562 (3)
unidentified (3)
Anguilla anguilla (2)
Vibrio (2)
Arabidopsis thaliana (2)
Homo sapiens (2)
Vibrio vulnificus YJ016 (1)
Vibrio vulnificus JY1305 (1)
Vibrio vulnificus JY1701 (1)
Vibrio vulnificus BAA87 (1)
Vibrio vulnificus 96-11-17M (1)
Vibrio vulnificus B2 (1)
Bacteriovorax sp. BSW11_IV (1)
Vibrio floridensis (1)
Vibrio vulnificus E64MW (1)
Vibrio vulnificus A1402 (1)
Bacteriovorax sp. Seq25_V (1)
Vibrio vulnificus VV (1)
Vibrio vulnificus 06-2450 (1)
Vibrio vulnificus VVyb1(BT3) (1)
Vibrio vulnificus CladeA-yb158 (1)
Vibrio vulnificus CN7 (1)
Vibrio fluvialis (1)
Penaeoidea sp. (1)
Epinephelus fuscoguttatus (1)
Vibrio sp. (1)

Repository

ENA (266)
geo (23)
biostudies-arrayexpress (15)
pride (3)
BioModels (1)
iProX (1)
MassIVE (1)

Tissue

Cell culture (1)

Technology Type

Mass Spectrometry (3)
Shotgun proteomics (2)
Bottom-up proteomics (1)

Instrument Platform

Agilent Technologies G2565CA microarray scanner (6)
PCR machine; AMPure XP beads; TruSeq Stranded mRNA stranded prep. kit (1)
PCR machine; Superscript II polymerase Kit (Invitrogen); PCR machine; AMPure XP beads; TruSeq stranded mRNA sample prep kit.; TruSeq Stranded mRNA stranded prep. kit (1)
Centrifuge 5424R (Eppendorf); miRNeasy Mini Kit (Qiagen); TURBO^TM DNase (Ambion); Bioanalyser (Agilent) (1)
Centrifuge 5424R (Eppendorf); RNAprotect Bacteria Reagent (Qiagen); Cell culture dish (Nunc) (1)
Centrifuge 5424R (Eppendorf); RNAprotect Bacteria Reagent (Qiagen) (1)
PCR machine; MICROBExpress kit (Ambion); TruSeq Stranded mRNA stranded prep. kit (1)
PCR machine; AMPure XP beads; TruSeq stranded mRNA sample prep. kit. (1)
Illumina Genome Analyzer IIx (1)
MALDI Synapt G2 HDMS (1)

Publication Date

2017 (8)
2013 (6)
2014 (4)
2011 (4)
2020 (4)
2026 (3)
2019 (3)
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2022 (2)
2021 (2)
2018 (2)
2010 (1)
2025 (1)
2015 (1)
2008 (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Submitter Keywords

FROG (1)

First Public Date

2024 (38)
2014 (31)
2015 (28)
2022 (26)
2021 (23)
2023 (16)
2020 (16)
2013 (16)
2018 (15)
2019 (14)
2026 (13)
2025 (13)
2017 (13)
2016 (4)

Classification

bacteria (192)

Modelling Approach

Constraint-based model (1)

Study type

Transcription profiling by array (8)
Comparative genomic hybridization by array (6)
RNA-seq of coding RNA (1)

Release Date

2021 (51)
2023 (48)
2024 (37)
2022 (37)
2017 (36)
2018 (32)
2015 (30)
2014 (28)
2020 (28)
2019 (28)
2011 (23)
2025 (21)
2012 (17)
2013 (15)
2016 (15)
2008 (15)
2010 (13)
2009 (12)
2005 (9)
2003 (9)
2026 (6)
2006 (6)
2007 (4)
2004 (4)
2001 (3)
2000 (3)
1998 (3)
2002 (1)

Lab affiliation

Center for Bioanalysis, Korea Research Institute of Standards and Science, 267 Gajeong-ro, Yuseong-gu, Daejeon 34113, Korea (1)
Guangdong Institute of Microbiology, Guangdong Academy of Sciences (1)
Microbiome Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Korea (1)

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Iron regulation in Vibrio vulnificus CMCP6

Vibrio vulnificus multiply rapidly in host tissues under iron overloaded conditions. To understand the effects of iron in the physiology of this pathogen we performed a genome-wide transcriptional analysis of this bacterium growing under three different iron concentrations. V.vulnificus CMCP6 cells ...

ORGANISM(S): Vibrio vulnificus CMCP6

2010-05-25 | E-GEOD-10633 | biostudies-arrayexpress

Genome- and proteome-wide analysis of lysine acetylation in Vibrio vulnificus Vv180806 reveals its regulatory roles in virulence and antibiotic resistance

V. vulnificus is an emergent pathogen and causes deadly septicemia in human. Protein acetylation regulates many important biological processes in bacteria. In this study, we identified the first lysine acetylome of V. vulnificus based on the whole-genome sequence of a cefoxitin-resistant strain isol...

ORGANISM(S): Vibrio vulnificus VV

2020-12-01 | PXD020376 | Pride

Kim2011 - the genome scale reconstruction of the Vibrio vulnificus metabolic network - VvuMBEL943

This is a model of the genome scale reconstruction of the Vibrio vulnificus metabolic network, VvuMBEL943, described in the article: Integrative genome-scale metabolic analysis of Vibrio vulnificus for drug targeting and discovery Hyun Uk Kim, Soo Young Kim, Haeyou...

2024-09-02 | BIOMD0000001064 | BioModels

FROG

Vibrio vulnificus

Vibrio vulnificus evolution

PRJNA413285 | ENA

Vibrio vulnificus

Vibrio vulnificus Targeted loci cultured

PRJNA730981 | ENA

Vibrio vulnificus

Vibrio vulnificus genome sequencing

PRJNA935503 | ENA

Vibrio vulnificus