Vicia faba - OmicsDI

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Organisms

Lactiplantibacillus paraplantarum (13)
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Methanospirillum stamsii (13)
Caballeronia mineralivorans (13)
Acyrthosiphon pisum (3)
Vicia faba (3)
Medicago truncatula (2)
Salmo salar (2)
Arabidopsis thaliana (1)
Vicia faba var. faba (1)
cellular organisms (1)

Organisms

Vicia faba (39)
Pseudomonas viciae (2)
Vicia faba var. faba (2)
soil metagenome (2)
Aphidius ervi (1)
root nodule metagenome (1)
Meloidogyne artiellia (1)
Rhizobium anhuiense (1)
Staphylococcus warneri (1)
Botrytis fabae (1)
Acyrthosiphon pisum (1)
plant metagenome (1)
Buchnera aphidicola (1)
food metagenome (1)
rhizosphere metagenome (1)

Repository

ENA (101)
pride (13)
biostudies-arrayexpress (12)
iProX (3)
MetaboLights (3)
geo (1)
jPOST (1)

Tissue

Plant cell (4)
Root (2)
Leaf (2)
Cell culture (2)
Plant culture (1)
Tuber (1)
Seed (1)
Salivary gland (1)
Whole body (1)
Rosette (1)
Saliva (1)

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Mass Spectrometry (13)
Shotgun proteomics (8)
Bottom-up proteomics (5)
Mass spectrometry (3)
Data-independent acquisition (3)
Gel-based experiment (1)
Data-dependent acquisition (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - positive - reverse phase (3)
BAS-1800 [FUJIFILM] (1)
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Gas Chromatography MS - positive (1)

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2011 (1)
2010 (1)
2023 (1)
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2019 (1)

CHEBI ID

CHEBI:94978 (1)
CHEBI:189437 (1)
CHEBI:189436 (1)
CHEBI:16595 (1)
CHEBI:72609 (1)
CHEBI:189435 (1)
CHEBI:189434 (1)
CHEBI:174355 (1)
CHEBI:49105 (1)
CHEBI:46760 (1)
CHEBI:189433 (1)
CHEBI:6099 (1)
CHEBI:28714 (1)
CHEBI:67380 (1)
CHEBI:27722 (1)
CHEBI:28777 (1)
CHEBI:75442 (1)
CHEBI:36122 (1)
CHEBI:136570 (1)
CHEBI:181195 (1)
CHEBI:42820 (1)
CHEBI:189428 (1)
CHEBI:136664 (1)
CHEBI:189426 (1)
CHEBI:189425 (1)
CHEBI:27325 (1)
CHEBI:189431 (1)
CHEBI:189430 (1)
CHEBI:37208 (1)
CHEBI:84851 (1)

Metabolite Name

1-Kestose (2)
Pyruvic acid (2)
2-Isopropylmalic acid (2)
Apigenin (2)
Citric acid (2)
Linoleic acid (2)
Hypoxanthine (2)
Xanthine (2)
Biotin (2)
2-(2-oxo-1,3-dihydroindol-3-yl)acetic acid (1)
1,6-Anhydro-beta-D-glucose (1)
4-O-Methylphloracetophenone (1)
P-Anisaldehyde (1)
Trans-Anethole (1)
3-(2,4-dihydroxyphenyl)-7-hydroxy-5-methoxychromen-4-one (1)
3-[4,5-dihydroxy-2-methoxy-3-(3-methylbut-2-en-1-yl)phenyl]-1-(3,4-dihydroxyphenyl)propan-1-one (1)
6-{4-[12-(3,4-dihydroxyphenyl)-8,13-dihydroxy-4-oxo-3,11-dioxatricyclo[8.4.0.0虏,鈦穄tetradeca-1(10),2(7),8-trien-6-yl]-2-hydroxyphenoxy}-3,4,5-trihydroxyoxane-2-carboxylic acid (1)
{2-[5,7-dihydroxy-2-(4-methoxyphenyl)-4-oxo-4H-chromen-6-yl]-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl}oxidanesulfonic acid (1)
6-{[2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4-oxo-8-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]-4H-chromen-6-yl]oxy}-3,4,5-trihydroxyoxane-2-carboxylic acid (1)
3,4,5-trihydroxy-6-{[3-(4-methoxy-1-benzofuran-5-yl)-3-oxopropanoyl]oxy}oxane-2-carboxylic acid (1)
6-{2-[3-(3,4-dihydroxyphenyl)propanoyl]-3,5-dihydroxy-6-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]phenoxy}-3,4,5-trihydroxyoxane-2-carboxylic acid (1)
[5-(3-{[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy}-5,7-dihydroxy-4-oxo-3,4-dihydro-2H-1-benzopyran-2-yl)-2-hydroxyphenyl]oxidanesulfonic acid (1)
6-[2,3-dihydroxy-5-({[3-hydroxy-6-(hydroxymethyl)-2,5-bis(3,4,5-trihydroxybenzoyloxy)oxan-4-yl]oxy}carbonyl)phenoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid (1)
3,4,5-trihydroxy-6-{2-[8-(hydroxymethyl)-8-methyl-2-oxo-2H,8H-pyrano[2,3-f]chromen-3-yl]-5-methoxyphenoxy}oxane-2-carboxylic acid (1)
Isovitexin 7,2''-Di-O-galactoside (1)
4-Ketonostoxanthin (1)
L-NMMA (1)
Trans, trans-3,5-Octadien-2-one (1)
3-O-methylquercetin (1)
DG180-182 (1)

First Public Date

2025 (13)
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2026 (9)
2020 (8)
2017 (8)
2021 (7)
2014 (7)
2022 (6)
2019 (6)
2016 (6)
2013 (4)
2018 (3)
2015 (3)

Classification

bacteria (1)

Study type

Transcription profiling by array (10)
RNAi profiling by array (1)

Release Date

2022 (47)
2025 (44)
2023 (35)
2021 (35)
2020 (31)
2024 (30)
2019 (22)
2017 (20)
2016 (16)
2015 (15)
2018 (13)
2014 (8)
2012 (7)
2008 (7)
2026 (7)
2013 (7)
2010 (3)
2007 (3)
2005 (3)
2011 (2)
2009 (2)
2003 (2)
2006 (1)
2004 (1)
2002 (1)
2001 (1)

Lab affiliation

Applied Proteomics Laboratory, Department of Biology, Maynooth University, Ireland. (2)
McDonald Professor of Palaeoproteomics, McDonald Institute for Archaeological Research, University of Cambridge, UK (1)
Institute for Plant Genetics Leibniz University Hannover Herrenhäuser Str. 2 30419 Hannover Germany (1)
Leibniz Universität Hannover Institute of Plant Genetics (1)
Institute of Molecular and Cell Biology, Agency for Science, Technology and Research, Singapore (1)
1Department of Food Characterization, Quality and Safety, Institute of Food Science, Technology and Nutrition (ICTAN-CSIC), Madrid, Spain (1)
Research Group for Food Allergy, National Food Institute, Technical University of Denmark (1)
Leibniz Universität Hannover Institute of Plant Genetics Herrenhäuser Str. 2 30419 Hannover (1)
Department of Crop Protection, Faculty of Bioscience Engineering, Ghent University, Coupure links 653, B-9000 Ghent,Belgium (1)
Department of Life Sciences, Walloon Agricultural Research Centre, Chaussée de Charleroi, P.B. 234, 5030 Gembloux, Belgium (1)
Leibniz University Hannover Institute of Plant Genetics (1)
Proteomics facility, Central Science Laboratory, University of Tasmania (1)

Tags

xref:PubMed:41257602 (1)
pathogen (1)
pathogen:bacterium (1)

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Combined analysis of transcriptome and metabolome reveals the accumulation of related metabolites and gene regulation networks during faba bean seed development

Background: Faba bean seeds are nutrient-dense, serving as a vital plant-based protein source for food and vegetables. However, the metabolic accumulation and transcriptional regulatory networks during seed development remain poorly understood.

Results: Metabolomic analysis of two developme...

2025-09-02 | MTBLS12471 | MetaboLights

Vicia faba Genome sequencing

PRJNA1028820 | ENA

Vicia faba Genome sequencing

PRJNA1025910 | ENA

Vicia faba Raw sequence reads

PRJNA979972 | ENA

Vicia faba Raw sequence reads

PRJNA1391386 | ENA

Vicia faba Raw sequence reads

PRJNA1392093 | ENA

iTRAQ-Based Proteomics Analysis Revealed Proteins Involved in Drought Response During the Germination Stage in Faba Bean

iTRAQ-Based Proteomics Analysis Revealed Proteins Involved in Drought Response During the Germination Stage in Faba Bean

ORGANISM(S): Vicia Faba

2023-11-17 | PXD047083 |

Vicia faba Raw sequence reads

PRJNA1358053 | ENA

Vicia faba cultivar:Merkur

Vicia faba transcriptome

PRJNA264858 | ENA

Vicia faba Raw sequence reads

PRJNA314368 | ENA

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