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Unknown (2295)
Proteomics (70)
Transcriptomics (67)
Genomics (30)
Metabolomics (9)
Other (6)
Models (1)
Clinical (1)

Organisms

Homo sapiens (130)
Mus musculus (14)
Anastrepha ludens (2)
Escherichia coli (2)
Persea americana (2)
Brucella melitensis bv. 1 str. 16M (1)
Danio rerio (1)
Bos taurus (1)
Chlamydomonas reinhardtii (1)
Cicer arietinum (1)
Insecta (1)
Macaca fascicularis (1)
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Oryctolagus cuniculus (1)
Rattus norvegicus (1)
Saccharomyces cerevisiae (1)
Sus scrofa domesticus (1)
Thermotoga maritima MSB8 (1)

Organisms

Mus musculus (1)

Repository

biostudies-arrayexpress (70)
pride (43)
EGA (26)
PeptideAtlas (18)
MassIVE (13)
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Tissue

Others (17)
Cell culture (10)
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Choroidal melanocyte (1)
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Heart (1)
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Macrophage (1)
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Disease

Colon cancer (3)
Breast cancer (3)
Hepatocellular carcinoma (2)
Colorectal cancer survivors (1)
Abdominal aortic aneurysm (1)
Breast ductal adenoma (1)
Disease free (1)
Lung adenocarcinoma (1)
Lung cancer (1)
Lymphoma (1)
Mantle cell lymphoma (1)
Myocardial ischemia (1)
Parkinson's disease (1)
Uveal melanoma (1)

Technology Type

Mass Spectrometry (43)
Shotgun proteomics (23)
Bottom-up proteomics (10)
Data-dependent acquisition (4)
Illumina HiSeq 2000 (3)
Mass spectrometry (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Gel-based experiment (2)
Affymetrix_SNP6_raw, Illumina HT 12, Agilent ncRNA 60k (1)
All-ion fragmentation (1)
MSE (1)
SRM/MRM (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Q Exactive Plus (11)
LTQ Orbitrap Velos (8)
TripleTOF 5600 (6)
LTQ Orbitrap XL (4)
Illumina HiSeq 2500 (3)
MS:1000419 (3)
LTQ Orbitrap (3)
LTQ XL (2)
MS:1000031 (2)
MS:1000044 (2)
BrukerDaltonics amaZon ion trap (2)
Illumina TrueSeq Exome Kit (1)
Qiagen DNAeasy blood and tissue kit (1)
MoFlo Legacy cell sorter (Beckman Coulter) (1)
PC (1)
G2565BA DNA microarray scanner [Agilent] (1)
Illumina MiSeq (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
Orbitrap Eclipse (1)
Q Exactive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
QExactive (1)

Publication Date

2014 (23)
2021 (19)
2013 (14)
2015 (12)
2011 (10)
2023 (10)
2019 (9)
2022 (8)
2025 (7)
2012 (7)
2024 (7)
2010 (6)
2020 (4)
2016 (4)
2008 (4)
2026 (4)
2018 (3)
2009 (2)
2006 (1)

UNIPROT ID/AC

B4DPR2 (18)
C9JM50 (18)
O76013 (18)
O76015 (18)
O95678 (18)
P02533 (18)
P02538 (18)
P02768 (18)
P04259 (18)
P04264 (18)
P05783 (18)
P05787 (18)
P07737 (18)
P08727 (18)
P08729 (18)
P08779 (18)
P12035 (18)
P13645 (18)
P13646 (18)
P13647 (18)
P19012 (18)
P19013 (18)
P23528 (18)
P35527 (18)
P35908 (18)
P37802 (18)
P48668 (18)
Q01546 (18)
Q04695 (18)
Q14525 (18)

ENSEMBL ID

ENSG00000170477 (18)
ENSG00000147251 (4)
ENSG00000247315 (3)

CHEBI ID

CHEBI:16610 (2)
CHEBI:15367 (1)
CHEBI:1026 (1)
CHEBI:116314 (1)
CHEBI:132244 (1)
CHEBI:132958 (1)
CHEBI:132983 (1)
CHEBI:134926 (1)
CHEBI:135119 (1)
CHEBI:135150 (1)
CHEBI:135234 (1)
CHEBI:137228 (1)
CHEBI:140761 (1)
CHEBI:141136 (1)
CHEBI:142245 (1)
CHEBI:143106 (1)
CHEBI:143107 (1)
CHEBI:143163 (1)
CHEBI:143241 (1)
CHEBI:143244 (1)
CHEBI:149776 (1)
CHEBI:15245 (1)
CHEBI:15318 (1)
CHEBI:15354 (1)
CHEBI:15584 (1)
CHEBI:15603 (1)
CHEBI:15604 (1)
CHEBI:15699 (1)
CHEBI:15727 (1)
CHEBI:15741 (1)

Metabolite Name

(+/-)-threo-Methylnaphthidate (1)
(1H-Indol-3-yl)(2,2,3,3-tetramethylcyclopropyl)methanone (1)
(1R,3R,4S,5R)-3,4-bis({[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy})-1,5-dihydroxycyclohexane-1-carboxylic acid (1)
(2R)-2-[(2R,5S)-5-[(2S)-2-hydroxybutyl]oxolan-2-yl]propanoic acid (1)
(3R)-beta-Leucine (1)
(3S,9aS)-3-benzyl-octahydro-1H-pyrido[1,2-a]pyrazin-1-one (1)
(6Z)-Octadecenoicacid (1)
1(2H)-Isoquinolinone (1)
1,2-Diaminobenzene (1)
1,3,4,10-Tetrahydro-9(2H)-acridinone (1)
1,3-Dihydro-1,3,3-trimethyl-2H-indol-2-ylidene acetaldehyde (1)
1,4-Lactone (1)
1,5-Naphthalenediamine (1)
1-(1,3,3-Trimethyl-2,3-dihydro-1H-indol-2-yliden)acetone (1)
1-(2,4-Dihydroxyquinolin-3-yl)ethan-1-one (1)
1-(4-Methylphenyl)pyrrolidine-2,5-dione (1)
1-(Benzylamino)-3-(3,4-dimethylphenoxy)propan-2-ol (1)
1-Methyladenine (1)
1-Pyrroline-4-hydroxy-2-carboxylate (1)
1-Stearoylglycerol (1)
10-Oxodecanoate (1)
2'-Deoxyadenosine 5'-monophosphate (dAMP) (1)
2'-Deoxycytidine 5'-monophosphate (dCMP) (1)
2'-Deoxyguanosine 5'-monophosphate (dGMP) (1)
2,2,6,6-Tetramethyl-1-piperidinol (TEMPO) (1)
2,3,4,9-Tetrahydro-1H-beta-carboline-3-carboxylic acid (1)
2,4-Quinolinediol (1)
2-(1H-indol-3-yl)acetic acid (1)
2-(2-amino-3-methylbutanamido)-3-phenylpropanoic acid (1)
2-(4-Methoxybenzylidene)quinuclidin-3-one (1)

First Public Date

2014 (1)

Modelling Approach

Multi-value logic model (1)

Study status

Completed (1)

Lab affiliation

Proteomics - Bioinformatics (4)
Baylor College of Medicine (2)
Biological Chemistry Department, David Geffen School of Medicine, UCLA (2)
1Cancer Research Program, Hospital del Mar Research Institute, Doctor Aiguader 88, Barcelona 08003, Spain. Centro de Investigación Biomédica en Red Cáncer (CIBERONC), Madrid, Spain. (1)
1Department of Biochemistry and Molecular Biomedicine, Faculty of Biology, University of Barcelona, Barcelona, Spain (1)
Abiel Roche-Lima, MSc., PhD. Assistant Professor Director, Integrated Informatics Services core IIS-RCMI University of Puerto Rico Medical Science Campus RCMI Program PO Box 365067 San Juan, PR. 00936-5067 Phone: +1 787 758-2525 x 2194 (1)
Biochemistry Dept, University of Cambridge, UK (1)
Biomedical Research in Melanoma-Animal Models and Cancer Laboratory- Vall d´Hebron Research Institute VHIR-Vall d’Hebron Hospital Barcelona-UAB 08035, Spain. (1)
Bristol-Myers Squibb, USA (1)
Cambridge Centre for Proteomics, Department of Biochemistry, Gleeson Building, Tennis Court Road, Cambridge, CB21QR, United Kingdom (1)
Cancer Epigenetics Group, Josep Carreras Leukaemia Research Institute, 08916, Badalona, Barcelona, Catalonia, Spain. (1)
Cancer Epigenetics Group, Josep Carreras Leukaemia Research Institute, 08916, Badalona, Barcelona, Catalonia, Spain (1)
Center for Genomic Regulation (CRG), University Pompeu Fabra (UPF) (1)
Centre Esther Koplowitz (CEK) (1)
Charles Perkins Centre, University of Sydney (1)
Department of Biochemistry, University of Cambridge (1)
Department of Biological Chemistry, University of California, Los Angeles (1)
Department of Biology, Ashoka University (1)
Department of Cell and Molecular Pharmacology and Experimental Therapeutics, Medical University of South Carolina, Charleston, South Carolina, United States of America (1)
Department of Medicine and General Service of Cytometry, Cancer Research Centre-IBMCC, IBSAL. University of Salamanca-CSIC, Campus Miguel de Unamuno s/n, 37007 Salamanca, Spain (1)
Hunan Institute of Animal and Veterinary Science (1)
INECOL A.C. (1)
Instituto de Ecologia A.C. (1)
Instituto de Ecologia, A.C. (1)
Instituto de Ecologia, A.C. (INECOL). Red de Estudios Moleculares Avanzados (1)
Instituto de ecologia A.C. (1)
Instituto de ecologia, A.C. (1)
Laboratorio de Proteómica Cardiovascular, Centro Nacional de Investigaciones Cardiovasculares (Spain) (1)
Mass Spectrometry & Proteomics Core Facility (MSPCF) Institute for Research in Biomedicine (IRB Barcelona) Barcelona Institute of Science and Technology (BIST) C/ Baldiri Reixac, 10-12 08028 Barcelona - Spain. (1)
Principle Investigator (1)

IsPrivate

False (1)

Study type

Transcription profiling by array (43)
Comparative genomic hybridization by array (7)
RNA-seq of coding RNA (6)
Methylation profiling by array (4)
High-throughput sequencing (2)
Methylation profiling by high throughput sequencing (2)
Human - Methylation microarray (1)
Cell line - One-color microarray (1)
Genotyping by array (1)
MicroRNA profiling by array (1)
DNA-seq (1)
Genotyping by high throughput sequencing (1)
Interventional (1)

Release Date

2022 (325)
2023 (276)
2025 (261)
2021 (251)
2024 (223)
2020 (189)
2019 (138)
2018 (100)
2015 (92)
2016 (90)
2017 (84)
2014 (72)
2013 (60)
2011 (48)
2026 (42)
2012 (40)
2009 (19)
2010 (18)
2008 (15)
2006 (5)
2007 (5)
2004 (4)
2005 (2)
2001 (2)
1999 (2)
2003 (1)
2000 (1)

Location

Malaysia (1)

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BCL2L10 Is Overexpressed in Melanoma Downstream of STAT3 and Promotes Cisplatin and ABT-737 Resistance.

Not available

S-EPMC7795116 | biostudies-literature

Secretome analysis of human A549 Lung cancer cells harboring LKB1 mutations.

STK11 (LKB1) missense somatic mutant isoforms promote tumor growth, motility and inflammation. Elucidating the contribution of somatic mutations to cancer is essential for personalized medicine. STK11 (LKB1) tumor suppressor appears to be inactivated in human cancer, however, somatic missense mutati...

ORGANISM(S): Homo sapiens (Human)

2021-09-09 | PXD018041 | Pride

Preliminary notes on <i>Justicia</i> (Acanthaceae) in Peru.

Not available

S-EPMC12239001 | biostudies-literature

Hopeful and Concerned: Public Input on Building a Trustworthy Medical Information Commons.

Not available

S-EPMC6730638 | biostudies-literature

Modulation of an ectodomain motif in the influenza A virus neuraminidase alters tetherin sensitivity and results in virus attenuation in vivo.

Not available

S-EPMC3963499 | biostudies-literature

Monograph of Doselia (Solanaceae), a new hemiepiphytic genus endemic to the northern Andes.

Not available

S-EPMC9849014 | biostudies-literature

Human BRAF-V600E melanoma cell lines drug sensitive vs drug resistant

aCGH of human melanoma cell lines comparing parental (drug sensitve) vs isogenic drug resistant-derived subline Two condition experiment: two BRAF-V600E mutant cell lines (drug sensitive - parental baseline) vs two derived sublines after chronic exposure to the MEK inhibitor trametinib (drug resista...

ORGANISM(S): Homo sapiens

2014-04-21 | E-GEOD-49430 | biostudies-arrayexpress

Circulating SOD2 is a Response Biomarker for Neoadjuvant Therapy in Breast Cancer

There is a great need of non-invasive tools that inform of an early molecular response to cancer therapeutic treatment. Here, we have tested the hypothesis that proteolytically resistant proteins could be candidate circulating tumor biomarkers for cancer therapy. Proteins resistant to proteolysis ar...

ORGANISM(S): Homo sapiens (Human)

2023-01-09 | PXD032359 | Pride

Proteolysis-resistant proteins Sod2 Biomarker

An Extended Approach for the Development of Fluorogenic trans-Cyclooctene-Tetrazine Cycloadditions.

Not available

S-EPMC6471176 | biostudies-literature

Phenolic Compounds Accumulation and Cell Death Degree Induced by Fusaric Acid in Agroforestry Hosts Plants of <i>Fusarium</i> Species.

Not available

S-EPMC12565482 | biostudies-literature

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2479 Results

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