Vincent C C - OmicsDI

Show results for

Unknown (2304)
Transcriptomics (407)
Genomics (170)
Proteomics (140)
Metabolomics (32)
Models (16)
Genomic (3)
Other (3)

Organisms

Homo sapiens (288)
Mus musculus (108)
Arabidopsis thaliana (69)
Saccharomyces cerevisiae (17)
Sus scrofa (16)
Drosophila melanogaster (9)
Rattus norvegicus (7)
Trypanosoma brucei (6)
Sinorhizobium meliloti (5)
Gallus gallus (4)
Danio rerio (4)
Sparus aurata (3)
Apis mellifera (3)
Caenorhabditis elegans (3)
Triticum aestivum (3)
Escherichia coli (3)
Aedes albopictus (2)
Streptococcus thermophilus (2)
Macaca mulatta (2)
Actinobacillus pleuropneumoniae (2)
Populus trichocarpa (2)
Vitis vinifera (2)
Candida albicans (2)
Chordata (1)
Rhinolophus ferrumequinum (1)
Invertebrate iridescent virus 6 (1)
Arabis alpina (1)
Neisseria gonorrhoeae F62 (1)
Thalassiosira pseudonana CCMP1335 (1)
Pinus radiata (1)

Organisms

Arabidopsis thaliana (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (449)
EGA (126)
pride (112)
MetaboLights (29)
MassIVE (22)
BioModels (16)
PanoramaPublic (4)
dbGaP (3)
GNPS (3)
GPMDB (3)
ENA (3)
geo (1)
jPOST (1)

Tissue

Cell culture (20)
Epithelial cell (10)
Liver (8)
Bone marrow (6)
Lung (6)
Colon (6)
Blood (6)
Mononuclear cell (5)
B cell (5)
Brain (4)
Blood plasma (4)
Tear (3)
Skin (3)
Heart (3)
Cartilage (2)
Bile (2)
Ovary (2)
Plant cell (2)
Macrophage (2)
Blood serum (2)
Leaf (2)
Fibroblast (2)
Kidney (2)
T cell (2)
Logarithmic phase culture (1)
Wing disc (1)
Prostate epithelium (1)
Mammary epithelium (1)
Blood-lymph (1)
Bile duct (1)

Disease

Colon cancer (6)
Acute myeloid leukemia (5)
Crohn's disease (4)
Melanoma (4)
Acute lymphocytic leukemia (4)
Breast cancer (4)
Not Available (3)
Lung adenocarcinoma (3)
Prostate adenocarcinoma (3)
Brain cancer (3)
Ovarian carcinoma (2)
Neuroblastoma (2)
Acute leukemia (2)
Glucocorticoid-remediable aldosteronism (1)
Systemic lupus erythematosus (1)
Cutaneous melanoma (1)
Breast adenocarcinoma (1)
Normal (1)
Malignant peripheral nerve sheath tumor (1)
Systemic scleroderma (1)
Diamond-Blackfan anemia (1)
Synovial sarcoma (1)
Embryonal rhabdomyosarcoma (1)
Renal Wilms' tumor (1)
Uveal melanoma (1)
Peripheral primitive neuroectodermal tumor (1)
Fibrosarcoma (1)
Head and neck cancer (1)
Dilated cardiomyopathy (1)
Malignant mesothelioma (1)

Technology Type

Mass Spectrometry (112)
Shotgun proteomics (69)
Mass spectrometry (29)
Bottom-up proteomics (20)
Data-dependent acquisition (16)
Affinity purification coupled with mass spectrometry proteomics (8)
Illumina HiSeq 2000 (7)
Data-independent acquisition (4)
SWATH MS (2)
Gel-based experiment (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Illumina OncoArray (1)
Affymetrix OncoScan FFPE Express (1)
454 GS FLX Titanium, Illumina HiSeq 2000 (1)
Illumina HumanCNV370, Illumina HumanHap 300 v2 Duo, Taqman and sequencing, Illumina Human660W-Quad (1)
Illumina 1.2M, Illumina 610K Quad, Affymetrix 6.0 (1)
Illumina_660K/Illumina_670K (1)
Illumina HumanHap 550 (1)
Metaproteomics (1)
Glycoproteomics (1)
Immunopeptidomics (1)
All-ion fragmentation (1)
Top-down proteomics (1)

Instrument Platform

NextSeq 500 (16)
Illumina HiSeq 2500 (10)
Illumina HiSeq 4000 (9)
Illumina NovaSeq 6000 (5)
Illumina Genome Analyzer IIx (3)
Illumina NovaSeq X (3)
NextSeq 2000 (3)
Illumina HiSeq 2000 (3)
Axon- GenePix4000B (2)
Illumina MiSeq (2)
LTQ Orbitrap XL (2)
I.DOT (Dispendix), C.WASH (CYTENA), Qubit Fluorometer (Thermo Fisher Scientific), Agilent TapeStation 4200 (1)
BD FACSDiscover S8 (1)
Quiagen Mini prep kit (1)
10X Genomics Chromium Controller (1)
MoFlo XDP (beckmancoulter) (1)
Hybridized arrays (1)
Total RNA from honey bee brains (1)
Labeled RNA (1)
Honey bee (Apis mellifera) colony. (1)
Brains of infected and control honey bees (1)
White-eye pupae, purified DWV particles (1)
White eye pupae without manipulation. (1)
GeneChip Scanner 3000 [Affymetrix] (1)
418 [Affymetrix] (1)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
Affymetrix Fluidics Station 400 (1)
DNBSEQ-T7 (1)
BGISEQ-500 (1)

Publication Date

2011 (78)
2014 (69)
2015 (50)
2012 (46)
2013 (43)
2021 (36)
2010 (34)
2022 (30)
2018 (30)
2016 (30)
2025 (25)
2024 (23)
2008 (22)
2026 (20)
2020 (19)
2017 (18)
2023 (15)
2019 (14)
2009 (12)
2007 (9)
2004 (6)
2005 (4)
2006 (3)

UNIPROT ID/AC

Q9GRG6 (5)
P02741 (4)
P08887 (4)
P05231 (4)
P43250 (1)
P34947 (1)
P35626 (1)
P25098 (1)
P32121 (1)
P49407 (1)
P30556 (1)
P01019 (1)
P63092 (1)
P17252 (1)
P27361 (1)

CHEBI ID

CHEBI:16027 (13)
CHEBI:4170 (11)
CHEBI:17754 (11)
CHEBI:16761 (11)
CHEBI:14336 (6)
CHEBI:40595 (6)
CHEBI:28874 (6)
CHEBI:13389 (6)
CHEBI:57642 (6)
CHEBI:15379 (6)
CHEBI:17138 (6)
CHEBI:15361 (6)
CHEBI:17794 (6)
CHEBI:15422 (6)
CHEBI:16908 (6)
CHEBI:16526 (6)
CHEBI:18021 (6)
CHEBI:17234 (6)
CHEBI:35490 (5)
CHEBI:17842 (5)
CHEBI:58273 (5)
CHEBI:58121 (5)
CHEBI:48928 (5)
CHEBI:18009 (5)
CHEBI:16474 (5)
CHEBI:33942 (2)
CHEBI:52217 (2)
CHEBI:28757 (2)
CHEBI:33842 (1)
CHEBI:57622 (1)

Metabolite Name

12,13-DiHOME (6)
12-HETE (6)
5-HETE (6)
15-HETE (6)
9,10-DiHOME (6)
Uracil (6)
Adenine (6)
L-Phenylalanine (6)
L-Threonine (6)
L-Serine (6)
Xanthine (6)
Sphinganine (5)
12,13-EpOME (5)
12-HEPE (5)
Acetylcholine (5)
Pyruvate (5)
Lactate (5)
CMP (5)
Adenosine (5)
AMP (5)
Hypoxanthine (5)
Guanine (5)
Creatinine (5)
L-Histidine (5)
L-Proline (5)
L-Arginine (5)
L-Asparagine (5)
L-Glutamine (5)
L-Alanine (5)
NG,NG-Dimethyl-L-arginine (4)

First Public Date

2017 (1)
2014 (1)
2013 (1)

Modelling Approach

Ordinary differential equation model (15)

Lab affiliation

Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (19)
IRIC-Université de Montréal (5)
MICALIS Institute Université Paris Saclay, INRAE, AgroParisTech 78350 Jouy-en-Josas France (4)
Metastases Research Laboratory, GIGA-CANCER, University of LIEGE, BELGIUM (2)
Yale University Department of Chemistry (2)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (2)
Laboratoire mixte UMR 5240 CNRS/INSA/UCBL/Bayer CropScience, Plateforme de protéomique, F-69263 Lyon, France (1)
chenlab.ca Brandon University (1)
Department of Nuclear Medicine and Radiobiology Faculty of Medicine and Health Sciences Université de Sherbrooke Sherbrooke, Quebec, Canada (1)
Dr Stéphane VINCENT, PhD, HDR Chargé de recherche INSERM INSERM/CNRS/Université de Strasbourg IGBMC/UMR 7104/U1258 1, rue Laurent Fries BP 10142 67404 ILLKIRCH CEDEX FRANCE Tel: +33 (0)3 88 65 34 25 Fax: +33 (0)3 88 65 32 01 (1)
Marseille Proteomique, Inserm U1068, CNRS UMR7258, Aix Marseille Université U105 (1)
PI. Associate Professor Department of Plant and Microbial Biology. UCB. (1)
Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA, 94720, USA (1)
Department: Department of Microbiology and Immunology Lab: Host and Pathogen Interactivity Lab Institute: National University of Singapore Country: Singapore (1)
Laboratoire de Génétique Ophtalmologique, INSERM U1163, Institut Imagine, Paris, France (1)
Biomolécules et Biotechnologies Végétales, EA2106, Université de Tours, 37200 Tours, France (1)
Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore (1)
IPSIM, INRAE, Montpellier, France (1)
Department of Molecular Mechanisms of Disease, University of Zurich (UZH), Zurich, Switzerland (1)
Segal Cancer Proteomics Centre, Lady Davis Institute for Medical Research, Jewish General Hospital, Montréal, Quebec, H3T 1E2, Canada Gerald Bronfman Department of Oncology, McGill University, Montréal, Quebec H4A 3T2, Canada Department of Pathology, McGill University, Montréal,Quebec H4A 3J1, Canada (1)
Segal Cancer Proteomics Centre, Lady Davis Institute for Medical Research and Jewish General Hospital, and McGill University, Montréal, Québec, Canada Gerald Bronfman Department of Oncology, McGill University, Montréal, Québec, Canada (1)
McGill University - Rosalind & Morris Goodman Cancer Institute (1)
Target Discovery Institute, NDMRB, University of Oxford (1)
University Medical Center Groningen and University of Groningen (1)
All liquid chromatography MS/MS (LC-MS/MS) data were searched against the relevant database using PEAKS 10.5 or Peaks X Pro (Bioinformatics Solution Inc.). For peptide identification, tolerance was set at 10 ppm and 0.01 Da for precursor and fragment ions, respectively. The occurrences of oxidation (M), deamidation and TMT modification were set as variable modifications (1)
University of Maryland - College Park Molecular & Cellular Biology (1)
Institut de Génétique et de Biologie Moléculaire et Cellulaire, 67404 Illkirch, France (1)
Associate Professor, Department of Microbiology and Immunology (1)
Biological and Life Sciences, Lancaster University (1)
Necker Proteomic Platform, SFR Necker, Paris, France (1)

IsPrivate

False (16)

Model Flag

Non Kinetic (1)

Modification

15.994915 (1)
57.021464 (1)
+3amu) (1)
Not available (1)

Study type

Transcription profiling by array (226)
RNA-seq of coding RNA (59)
ChIP-chip by tiling array (39)
ChIP-seq (34)
Comparative genomic hybridization by array (21)
RNA-seq of non coding RNA (11)
Methylation profiling by array (7)
RNA-seq of coding RNA from single cells (6)
ChIP-chip by array (5)
Unknown experiment type (4)
Transcription profiling by tiling array (4)
Genotyping by array (4)
Other (4)
Methylation profiling by high throughput sequencing (4)
Transcription profiling by RT-PCR (3)
DNA-seq (3)
Transcription profiling by SAGE (2)
Human - High-throughput sequencing (2)
Animal - High-throughput sequencing (2)
High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
CLIP-seq (1)
Spatial transcriptomics by high-throughput sequencing (1)
Bisulfite-seq (1)
Hi-C (1)
Proteomic profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2021 (288)
2022 (257)
2025 (232)
2020 (219)
2023 (216)
2024 (209)
2015 (143)
2018 (141)
2019 (139)
2014 (130)
2016 (126)
2011 (119)
2017 (98)
2013 (94)
2012 (93)
2010 (65)
2008 (41)
2026 (36)
2009 (34)
2007 (19)
2004 (13)
2006 (11)
2005 (9)
2002 (6)
2001 (6)
2000 (4)
2003 (1)
1999 (1)
1998 (1)
1997 (1)

Previous page
1 / 308
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 308
Next page

Sort by:

Relevance

Page size

c-myc-3'RR/p53+/- mice lymphomas

c-myc-3'RR mice prone to develop Burkitt lymphoma (BL) were crossed with p53+/- mice in order to obtain c-myc-3'RR/p53+/- mice. These mice develop a wider spectrum of lymphoma including BL, mantle cell lymphoma (MCL) and plasma cell lymphoma (PCL). Transcriptoma analysis of these lymphomas is invest...

ORGANISM(S): Mus musculus

2012-01-05 | E-GEOD-31814 | biostudies-arrayexpress

CHiCAGO: Robust Detection of DNA Looping Interactions in Capture Hi-C data

Capture Hi-C (CHi-C) is a state-of-the art method for profiling chromosomal interactions involving targeted regions of interest (such as gene promoters) globally and at high resolution. Signal detection in CHi-C data involves a number of statistical challenges that are not observed when using other ...

ORGANISM(S): Mus musculus

2016-05-18 | E-GEOD-81503 | biostudies-arrayexpress

The blood transcriptional signature of chronic HCV [Affymetrix data]

This study characterizes the effects of chronic Hepatitis C virus (HCV) infection on gene expression by analyzing blood samples from 10 treatment-naive HCV patients and 6 healthy volunteers. Differential expression analysis of microarray data from peripheral blood mononuclear cells (PBMCs) identifie...

ORGANISM(S): Homo sapiens

2012-10-22 | E-GEOD-40184 | biostudies-arrayexpress

Transcriptome analysis Rhinolophus ferrumequinum (Rfe) cells upon poly-I:C transfection

Transcriptome analysis Rhinolophus ferrumequinum (Rfe) cells upon poly-I:C transfection. Rfe cell expressing human ACE2 and TMPRSS2 (Rfe-AT) and a SARS-Cov-2 / BANAL-236 successible clonal Rfe-AT cell line (Rfe-ATC) were transfected with poly-I:C or PBS and transcriptome was analysed using RNA seque...

ORGANISM(S): Rhinolophus ferrumequinum

2026-04-10 | E-MTAB-16878 | biostudies-arrayexpress

Neutralizing antibody-resistant hepatitis C virus cell-to-cell transmission.

Not available

S-EPMC3014195 | biostudies-literature

Advances in the treatment of hepatitis C virus infection.

Not available

S-EPMC3317517 | biostudies-literature

The blood transcriptional signature of chronic HCV [Illumina data]

ORGANISM(S): Homo sapiens

2012-10-22 | E-GEOD-40223 | biostudies-arrayexpress

Hepatitis C virus (HCV) evades NKG2D-dependent NK cell responses through NS5A-mediated imbalance of inflammatory cytokines.

Not available

S-EPMC2978723 | biostudies-literature

RNA polymerase II transcription with partially assembled TFIID complexes

RNA polymerase II (Pol II) transcription initiation starts with the assembly of the preinitiation complex (PIC) on core promoters. The PIC is composed of six general transcription factors (GTFs). The recognition of the core promoter sequences by the TFIID GTF complex is the first step of the PIC ass...

ORGANISM(S): Mus musculus (Mouse)

2024-05-21 | PXD046459 | Pride

DNA double-strand breaks and 3D chromatin conformation (Hi-C, 4C-seq, ChIP-seq)

DNA Double-Strand Breaks (DSBs) are highly detrimental since they can lead to mutations and chromosomes rearrangements (amplification, deletion, translocation and chromosome loss). Here, we set to assess the tridimensional genome organization around DSBs and its role in DSB repair foci formation. We...

ORGANISM(S): Homo sapiens

2021-01-29 | E-MTAB-8851 | biostudies-arrayexpress

Previous page
1 / 308
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 308
Next page

Sort by:

Relevance

Page size

3076 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

CHEBI ID

Metabolite Name

First Public Date

Modelling Approach

Lab affiliation

Tags

IsPrivate

Model Flag

Modification

Study type

Release Date

OmicsDI is part of the ELIXIR infrastructure

Tweets